Wall clock time and date at job start Wed Apr 1 2020 00:58:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46897 * 110.99916 * 2 1 4 4 C 1.50697 * 109.47230 * 66.04453 * 3 2 1 5 5 H 1.08002 * 120.00273 * 359.97438 * 4 3 2 6 6 C 1.37880 * 119.99845 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99966 * 180.02562 * 6 4 3 8 8 Si 1.86800 * 120.00081 * 359.97438 * 6 4 3 9 9 H 1.48499 * 109.47133 * 89.99933 * 8 6 4 10 10 H 1.48503 * 109.47111 * 210.00365 * 8 6 4 11 11 H 1.48501 * 109.46981 * 329.99998 * 8 6 4 12 12 C 1.46900 * 111.00228 * 236.04180 * 2 1 3 13 13 C 1.53004 * 109.47143 * 293.95756 * 12 2 1 14 14 H 1.08994 * 109.47004 * 59.99589 * 13 12 2 15 15 O 1.42899 * 109.46860 * 299.99665 * 13 12 2 16 16 C 1.53001 * 109.47042 * 179.97438 * 13 12 2 17 17 N 1.46900 * 109.47015 * 184.99987 * 16 13 12 18 18 C 1.46902 * 110.99659 * 180.02562 * 17 16 13 19 19 C 1.50705 * 109.46893 * 179.97438 * 18 17 16 20 20 N 1.29030 * 124.91474 * 90.27829 * 19 18 17 21 21 C 1.31784 * 117.12463 * 180.22615 * 20 19 18 22 22 C 1.50698 * 122.74806 * 179.75093 * 21 20 19 23 23 C 1.53006 * 109.47184 * 254.70925 * 22 21 20 24 24 C 1.52999 * 109.46824 * 134.71677 * 22 21 20 25 25 C 1.52997 * 109.47342 * 14.71149 * 22 21 20 26 26 C 1.33637 * 114.49820 * 359.48514 * 21 20 19 27 27 S 1.70974 * 124.91990 * 269.97675 * 19 18 17 28 28 H 1.09002 * 109.47475 * 183.95304 * 1 2 3 29 29 H 1.08994 * 109.47319 * 303.95441 * 1 2 3 30 30 H 1.08999 * 109.47002 * 63.95596 * 1 2 3 31 31 H 1.09008 * 109.46678 * 186.04358 * 3 2 1 32 32 H 1.08995 * 109.47020 * 306.04077 * 3 2 1 33 33 H 0.97001 * 119.99942 * 180.02562 * 7 6 4 34 34 H 1.09001 * 109.47271 * 173.95936 * 12 2 1 35 35 H 1.09004 * 109.46952 * 53.95393 * 12 2 1 36 36 H 0.96698 * 114.00376 * 299.99775 * 15 13 12 37 37 H 1.09000 * 109.47444 * 64.99769 * 16 13 12 38 38 H 1.09001 * 109.47117 * 304.99982 * 16 13 12 39 39 H 1.00900 * 111.00017 * 56.04654 * 17 16 13 40 40 H 1.09000 * 109.47426 * 60.00221 * 18 17 16 41 41 H 1.09001 * 109.46978 * 299.99394 * 18 17 16 42 42 H 1.09001 * 109.46801 * 300.00442 * 23 22 21 43 43 H 1.09001 * 109.46998 * 60.00038 * 23 22 21 44 44 H 1.09000 * 109.47050 * 180.02562 * 23 22 21 45 45 H 1.09000 * 109.47160 * 179.97438 * 24 22 21 46 46 H 1.09002 * 109.46719 * 299.99679 * 24 22 21 47 47 H 1.08993 * 109.47839 * 59.99520 * 24 22 21 48 48 H 1.09001 * 109.47375 * 299.99730 * 25 22 21 49 49 H 1.09002 * 109.46777 * 60.00285 * 25 22 21 50 50 H 1.09000 * 109.47140 * 179.97438 * 25 22 21 51 51 H 1.08004 * 126.03480 * 180.26217 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 1.2984 5 1 1.0738 1.5115 2.0484 6 6 2.0267 3.3495 1.5284 7 7 1.7143 3.9391 2.6617 8 14 2.9999 4.2761 0.2308 9 1 2.0633 4.9797 -0.6819 10 1 3.8863 5.2679 0.8912 11 1 3.8239 3.3174 -0.5484 12 6 1.9955 -0.7661 -1.1375 13 6 1.6314 -2.2427 -0.9702 14 1 0.5472 -2.3475 -0.9322 15 8 2.2009 -2.7391 0.2428 16 6 2.1793 -3.0404 -2.1553 17 7 1.7287 -4.4352 -2.0568 18 6 2.2373 -5.2332 -3.1805 19 6 1.7562 -6.6550 -3.0452 20 7 0.6584 -7.1137 -3.5444 21 6 0.3848 -8.3846 -3.3279 22 6 -0.8639 -9.0496 -3.8470 23 6 -1.8472 -9.2593 -2.6936 24 6 -0.5028 -10.4033 -4.4617 25 6 -1.5095 -8.1614 -4.9125 26 6 1.3082 -9.0365 -2.6150 27 16 2.5894 -7.8953 -2.2143 28 1 -0.3634 -1.0252 0.0708 29 1 -0.3633 0.5739 0.8524 30 1 -0.3633 0.4512 -0.9233 31 1 3.0797 1.3443 -0.1082 32 1 1.5611 1.9272 -0.8309 33 1 1.9882 4.8554 2.8233 34 1 3.0798 -0.6612 -1.1755 35 1 1.5611 -0.3874 -2.0628 36 1 3.1652 -2.6772 0.2788 37 1 3.2687 -3.0088 -2.1422 38 1 1.8144 -2.6056 -3.0858 39 1 0.7225 -4.4872 -2.0022 40 1 3.3272 -5.2167 -3.1739 41 1 1.8731 -4.8137 -4.1183 42 1 -1.3872 -9.8920 -1.9346 43 1 -2.1044 -8.2948 -2.2556 44 1 -2.7502 -9.7407 -3.0690 45 1 -1.4060 -10.8845 -4.8368 46 1 0.1977 -10.2539 -5.2833 47 1 -0.0429 -11.0360 -3.7027 48 1 -1.7668 -7.1970 -4.4745 49 1 -0.8090 -8.0121 -5.7341 50 1 -2.4124 -8.6426 -5.2882 51 1 1.2749 -10.0788 -2.3341 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000571432841.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:58:18 Heat of formation + Delta-G solvation = -6.469669 kcal Electronic energy + Delta-G solvation = -26969.395340 eV Core-core repulsion = 23223.479495 eV Total energy + Delta-G solvation = -3745.915844 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.188 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.58659 -38.41869 -36.91489 -35.96412 -34.96662 -32.45686 -31.16058 -29.68324 -28.30789 -27.65709 -27.56541 -26.80968 -25.44677 -23.99830 -23.04676 -21.34927 -20.79116 -20.10328 -19.46604 -17.64223 -16.94917 -16.55780 -16.10974 -15.83912 -15.45888 -15.20422 -14.96089 -14.64114 -14.53366 -14.26079 -14.20666 -13.87696 -13.81562 -13.34617 -12.92828 -12.80211 -12.66431 -12.55305 -12.49039 -12.30153 -12.27449 -12.02439 -11.94691 -11.60927 -11.33301 -11.28578 -11.25661 -11.08607 -10.98467 -10.73492 -10.69166 -10.26763 -9.92523 -9.88602 -9.67599 -9.53747 -9.22416 -9.01973 -8.67453 -8.57233 -7.34194 -6.04017 -4.01137 0.41675 1.12173 1.51778 2.47467 3.27307 3.35052 3.36237 3.56116 3.95775 4.35227 4.41874 4.46236 4.58281 4.60111 4.75092 4.82430 4.88971 4.95862 5.06428 5.11889 5.18438 5.21500 5.24678 5.29708 5.35026 5.39425 5.43239 5.51880 5.52786 5.56767 5.57286 5.59497 5.69258 5.90964 5.93142 5.93718 6.07515 6.11044 6.21019 6.29646 6.60774 6.70164 6.84028 6.99100 7.02673 7.48917 7.59701 7.90184 8.00014 8.13937 8.67296 9.05918 9.57425 11.09181 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.023974 B = 0.001744 C = 0.001708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.670789 B =16049.379569 C =16386.250982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.519 5.519 3 C 0.162 3.838 4 C -0.508 4.508 5 H 0.082 0.918 6 C 0.067 3.933 7 N -0.900 5.900 8 Si 0.876 3.124 9 H -0.278 1.278 10 H -0.285 1.285 11 H -0.268 1.268 12 C 0.021 3.979 13 C 0.118 3.882 14 H 0.093 0.907 15 O -0.533 6.533 16 C 0.027 3.973 17 N -0.672 5.672 18 C 0.135 3.865 19 C 0.052 3.948 20 N -0.465 5.465 21 C 0.082 3.918 22 C 0.004 3.996 23 C -0.138 4.138 24 C -0.139 4.139 25 C -0.128 4.128 26 C -0.266 4.266 27 S 0.149 5.851 28 H 0.050 0.950 29 H 0.080 0.920 30 H 0.008 0.992 31 H 0.027 0.973 32 H -0.018 1.018 33 H 0.263 0.737 34 H 0.071 0.929 35 H 0.028 0.972 36 H 0.369 0.631 37 H 0.079 0.921 38 H 0.040 0.960 39 H 0.348 0.652 40 H 0.093 0.907 41 H 0.060 0.940 42 H 0.056 0.944 43 H 0.059 0.941 44 H 0.063 0.937 45 H 0.063 0.937 46 H 0.056 0.944 47 H 0.057 0.943 48 H 0.064 0.936 49 H 0.054 0.946 50 H 0.053 0.947 51 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.056 -29.661 -17.032 34.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.242 5.242 3 C 0.036 3.964 4 C -0.546 4.546 5 H 0.100 0.900 6 C -0.134 4.134 7 N -0.539 5.539 8 Si 0.703 3.297 9 H -0.204 1.204 10 H -0.211 1.211 11 H -0.193 1.193 12 C -0.109 4.109 13 C 0.058 3.942 14 H 0.111 0.889 15 O -0.337 6.337 16 C -0.103 4.103 17 N -0.305 5.305 18 C 0.003 3.997 19 C -0.226 4.226 20 N -0.180 5.180 21 C -0.051 4.051 22 C 0.002 3.998 23 C -0.195 4.195 24 C -0.197 4.197 25 C -0.186 4.186 26 C -0.406 4.406 27 S 0.404 5.596 28 H 0.069 0.931 29 H 0.099 0.901 30 H 0.027 0.973 31 H 0.045 0.955 32 H -0.001 1.001 33 H 0.073 0.927 34 H 0.089 0.911 35 H 0.046 0.954 36 H 0.215 0.785 37 H 0.097 0.903 38 H 0.058 0.942 39 H 0.167 0.833 40 H 0.111 0.889 41 H 0.078 0.922 42 H 0.075 0.925 43 H 0.078 0.922 44 H 0.082 0.918 45 H 0.082 0.918 46 H 0.076 0.924 47 H 0.076 0.924 48 H 0.083 0.917 49 H 0.073 0.927 50 H 0.072 0.928 51 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -0.339 -29.673 -15.668 33.557 hybrid contribution -0.433 1.090 -2.599 2.851 sum -0.772 -28.582 -18.267 33.930 Atomic orbital electron populations 1.22290 0.88319 1.00060 1.00660 1.61844 1.07320 1.15944 1.39101 1.20207 0.95086 0.84143 0.97006 1.21045 1.35472 0.97143 1.00939 0.90024 1.24910 0.95817 0.97372 0.95325 1.69895 1.46941 1.13199 1.23868 0.86856 0.80614 0.80027 0.82157 1.20436 1.21129 1.19310 1.22782 1.00544 0.94243 0.93297 1.21823 0.98351 0.90472 0.83591 0.88909 1.86618 1.24911 1.84860 1.37278 1.22769 1.01326 0.87594 0.98563 1.60410 1.17326 1.10422 1.42315 1.20436 1.00159 0.85113 0.94037 1.26824 0.94665 1.01307 0.99777 1.66083 1.16602 1.13287 1.22031 1.20089 0.97700 0.88620 0.98657 1.19171 0.90175 0.94585 0.95917 1.21887 0.98332 1.02198 0.97127 1.21921 1.01822 0.95179 1.00743 1.21698 0.99669 0.99576 0.97665 1.26829 0.99446 1.05198 1.09115 1.84066 1.23623 1.01167 1.50697 0.93141 0.90081 0.97340 0.95525 1.00085 0.92683 0.91081 0.95401 0.78492 0.90280 0.94214 0.83316 0.88903 0.92190 0.92478 0.92207 0.91841 0.91778 0.92442 0.92419 0.91727 0.92665 0.92750 0.80908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.69 9.14 60.06 0.55 1.24 16 2 N -0.52 -10.85 4.62 -244.37 -1.13 -11.98 16 3 C 0.16 3.94 3.79 -4.98 -0.02 3.92 16 4 C -0.51 -14.58 9.01 -34.44 -0.31 -14.89 16 5 H 0.08 2.57 7.37 -52.49 -0.39 2.18 16 6 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 7 N -0.90 -27.75 13.96 55.43 0.77 -26.98 16 8 Si 0.88 21.55 27.47 -169.99 -4.67 16.88 16 9 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 10 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.27 -6.31 6.54 56.52 0.37 -5.94 16 12 C 0.02 0.34 4.62 -3.82 -0.02 0.32 16 13 C 0.12 1.59 3.01 -26.73 -0.08 1.51 16 14 H 0.09 1.32 6.55 -51.93 -0.34 0.98 16 15 O -0.53 -8.19 13.15 -35.23 -0.46 -8.65 16 16 C 0.03 0.28 5.32 -3.82 -0.02 0.26 16 17 N -0.67 -6.91 6.44 -115.05 -0.74 -7.65 16 18 C 0.13 1.19 6.26 -4.97 -0.03 1.16 16 19 C 0.05 0.52 6.90 -13.45 -0.09 0.42 16 20 N -0.47 -4.98 9.55 -8.06 -0.08 -5.06 16 21 C 0.08 0.77 5.41 -84.23 -0.46 0.31 16 22 C 0.00 0.03 0.90 -155.66 -0.14 -0.11 16 23 C -0.14 -0.94 8.43 37.16 0.31 -0.63 16 24 C -0.14 -0.80 8.13 37.16 0.30 -0.49 16 25 C -0.13 -1.00 7.91 37.16 0.29 -0.71 16 26 C -0.27 -2.20 10.40 29.12 0.30 -1.90 16 27 S 0.15 1.28 23.18 -107.50 -2.49 -1.21 16 28 H 0.05 0.87 6.47 -51.93 -0.34 0.53 16 29 H 0.08 1.78 6.76 -51.93 -0.35 1.43 16 30 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 31 H 0.03 0.65 6.99 -51.92 -0.36 0.29 16 32 H -0.02 -0.45 7.55 -51.93 -0.39 -0.84 16 33 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 34 H 0.07 1.09 7.93 -51.93 -0.41 0.68 16 35 H 0.03 0.43 8.12 -51.93 -0.42 0.01 16 36 H 0.37 4.65 9.05 45.56 0.41 5.06 16 37 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.35 3.80 8.72 -39.29 -0.34 3.46 16 40 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 44 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 46 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 47 H 0.06 0.28 7.15 -51.93 -0.37 -0.09 16 48 H 0.06 0.59 7.98 -51.93 -0.41 0.17 16 49 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 50 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 51 H 0.17 1.04 7.31 -52.48 -0.38 0.66 16 LS Contribution 417.80 15.07 6.30 6.30 Total: -1.00 -32.71 417.80 -10.35 -43.06 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -8.34 Total: 3.01 kcal Atomic # 6 Polarization: -8.21 SS G_CDS: 0.50 Total: -7.72 kcal Atomic # 7 Polarization: -50.49 SS G_CDS: -1.17 Total: -51.66 kcal Atomic # 8 Polarization: -8.19 SS G_CDS: -0.46 Total: -8.65 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.67 Total: 16.88 kcal Atomic # 16 Polarization: 1.28 SS G_CDS: -2.49 Total: -1.21 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -32.71 -10.35 -43.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571432841.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.592 kcal (2) G-P(sol) polarization free energy of solvation -32.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds