Wall clock time and date at job start Wed Apr 1 2020 00:58:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46897 * 110.99916 * 2 1 4 4 C 1.50697 * 109.47230 * 66.04453 * 3 2 1 5 5 H 1.08002 * 120.00273 * 359.97438 * 4 3 2 6 6 C 1.37880 * 119.99845 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99966 * 180.02562 * 6 4 3 8 8 Si 1.86800 * 120.00081 * 359.97438 * 6 4 3 9 9 H 1.48499 * 109.47133 * 89.99933 * 8 6 4 10 10 H 1.48503 * 109.47111 * 210.00365 * 8 6 4 11 11 H 1.48501 * 109.46981 * 329.99998 * 8 6 4 12 12 C 1.46900 * 111.00228 * 236.04180 * 2 1 3 13 13 C 1.53004 * 109.47143 * 293.95756 * 12 2 1 14 14 H 1.08994 * 109.47004 * 59.99589 * 13 12 2 15 15 O 1.42899 * 109.46860 * 299.99665 * 13 12 2 16 16 C 1.53001 * 109.47042 * 179.97438 * 13 12 2 17 17 N 1.46900 * 109.47015 * 184.99987 * 16 13 12 18 18 C 1.46902 * 110.99659 * 180.02562 * 17 16 13 19 19 C 1.50705 * 109.46893 * 179.97438 * 18 17 16 20 20 N 1.29030 * 124.91474 * 90.27829 * 19 18 17 21 21 C 1.31784 * 117.12463 * 180.22615 * 20 19 18 22 22 C 1.50698 * 122.74806 * 179.75093 * 21 20 19 23 23 C 1.53006 * 109.47184 * 254.70925 * 22 21 20 24 24 C 1.52999 * 109.46824 * 134.71677 * 22 21 20 25 25 C 1.52997 * 109.47342 * 14.71149 * 22 21 20 26 26 C 1.33637 * 114.49820 * 359.48514 * 21 20 19 27 27 S 1.70974 * 124.91990 * 269.97675 * 19 18 17 28 28 H 1.09002 * 109.47475 * 183.95304 * 1 2 3 29 29 H 1.08994 * 109.47319 * 303.95441 * 1 2 3 30 30 H 1.08999 * 109.47002 * 63.95596 * 1 2 3 31 31 H 1.09008 * 109.46678 * 186.04358 * 3 2 1 32 32 H 1.08995 * 109.47020 * 306.04077 * 3 2 1 33 33 H 0.97001 * 119.99942 * 180.02562 * 7 6 4 34 34 H 1.09001 * 109.47271 * 173.95936 * 12 2 1 35 35 H 1.09004 * 109.46952 * 53.95393 * 12 2 1 36 36 H 0.96698 * 114.00376 * 299.99775 * 15 13 12 37 37 H 1.09000 * 109.47444 * 64.99769 * 16 13 12 38 38 H 1.09001 * 109.47117 * 304.99982 * 16 13 12 39 39 H 1.00900 * 111.00017 * 56.04654 * 17 16 13 40 40 H 1.09000 * 109.47426 * 60.00221 * 18 17 16 41 41 H 1.09001 * 109.46978 * 299.99394 * 18 17 16 42 42 H 1.09001 * 109.46801 * 300.00442 * 23 22 21 43 43 H 1.09001 * 109.46998 * 60.00038 * 23 22 21 44 44 H 1.09000 * 109.47050 * 180.02562 * 23 22 21 45 45 H 1.09000 * 109.47160 * 179.97438 * 24 22 21 46 46 H 1.09002 * 109.46719 * 299.99679 * 24 22 21 47 47 H 1.08993 * 109.47839 * 59.99520 * 24 22 21 48 48 H 1.09001 * 109.47375 * 299.99730 * 25 22 21 49 49 H 1.09002 * 109.46777 * 60.00285 * 25 22 21 50 50 H 1.09000 * 109.47140 * 179.97438 * 25 22 21 51 51 H 1.08004 * 126.03480 * 180.26217 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 1.2984 5 1 1.0738 1.5115 2.0484 6 6 2.0267 3.3495 1.5284 7 7 1.7143 3.9391 2.6617 8 14 2.9999 4.2761 0.2308 9 1 2.0633 4.9797 -0.6819 10 1 3.8863 5.2679 0.8912 11 1 3.8239 3.3174 -0.5484 12 6 1.9955 -0.7661 -1.1375 13 6 1.6314 -2.2427 -0.9702 14 1 0.5472 -2.3475 -0.9322 15 8 2.2009 -2.7391 0.2428 16 6 2.1793 -3.0404 -2.1553 17 7 1.7287 -4.4352 -2.0568 18 6 2.2373 -5.2332 -3.1805 19 6 1.7562 -6.6550 -3.0452 20 7 0.6584 -7.1137 -3.5444 21 6 0.3848 -8.3846 -3.3279 22 6 -0.8639 -9.0496 -3.8470 23 6 -1.8472 -9.2593 -2.6936 24 6 -0.5028 -10.4033 -4.4617 25 6 -1.5095 -8.1614 -4.9125 26 6 1.3082 -9.0365 -2.6150 27 16 2.5894 -7.8953 -2.2143 28 1 -0.3634 -1.0252 0.0708 29 1 -0.3633 0.5739 0.8524 30 1 -0.3633 0.4512 -0.9233 31 1 3.0797 1.3443 -0.1082 32 1 1.5611 1.9272 -0.8309 33 1 1.9882 4.8554 2.8233 34 1 3.0798 -0.6612 -1.1755 35 1 1.5611 -0.3874 -2.0628 36 1 3.1652 -2.6772 0.2788 37 1 3.2687 -3.0088 -2.1422 38 1 1.8144 -2.6056 -3.0858 39 1 0.7225 -4.4872 -2.0022 40 1 3.3272 -5.2167 -3.1739 41 1 1.8731 -4.8137 -4.1183 42 1 -1.3872 -9.8920 -1.9346 43 1 -2.1044 -8.2948 -2.2556 44 1 -2.7502 -9.7407 -3.0690 45 1 -1.4060 -10.8845 -4.8368 46 1 0.1977 -10.2539 -5.2833 47 1 -0.0429 -11.0360 -3.7027 48 1 -1.7668 -7.1970 -4.4745 49 1 -0.8090 -8.0121 -5.7341 50 1 -2.4124 -8.6426 -5.2882 51 1 1.2749 -10.0788 -2.3341 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000571432841.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:58:17 Heat of formation + Delta-G solvation = -32.285886 kcal Electronic energy + Delta-G solvation = -26970.514815 eV Core-core repulsion = 23223.479495 eV Total energy + Delta-G solvation = -3747.035320 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.188 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.23665 -39.59776 -37.78853 -37.08740 -35.94856 -34.58693 -32.06679 -30.80133 -29.65506 -28.70457 -28.15153 -27.68871 -26.68396 -25.01851 -24.10711 -22.58139 -21.80052 -21.42761 -20.10826 -19.02130 -18.30714 -17.53718 -17.05858 -16.80334 -16.57575 -16.23693 -16.02437 -15.96353 -15.59088 -15.39680 -15.21318 -14.82501 -14.71507 -14.49201 -14.16745 -14.10226 -13.68281 -13.40349 -13.38585 -13.14863 -13.04925 -13.03464 -12.85590 -12.69357 -12.57733 -12.57003 -12.46637 -12.27274 -11.89397 -11.83002 -11.81326 -11.66067 -11.60100 -11.49301 -10.79064 -10.74181 -10.54655 -10.33730 -9.68459 -9.43005 -8.96277 -8.27466 -6.31221 -0.25267 0.47614 0.85414 1.34453 1.36727 1.47588 1.79517 2.34824 2.83126 3.04932 3.10808 3.43159 3.71562 3.79579 3.89786 3.92996 4.06053 4.13370 4.20391 4.29935 4.34490 4.38172 4.43835 4.49137 4.55770 4.58953 4.63448 4.67729 4.76054 4.77604 4.81547 4.87775 4.89847 4.97920 5.00946 5.01703 5.04129 5.12769 5.16847 5.24655 5.36009 5.39673 5.46531 5.53921 5.84682 5.99768 6.20278 6.35915 6.67660 6.75575 6.82220 7.09141 7.32221 8.89440 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.023974 B = 0.001744 C = 0.001708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.670789 B =16049.379569 C =16386.250982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.539 5.539 3 C 0.172 3.828 4 C -0.518 4.518 5 H 0.034 0.966 6 C 0.004 3.996 7 N -0.950 5.950 8 Si 0.952 3.048 9 H -0.269 1.269 10 H -0.281 1.281 11 H -0.246 1.246 12 C 0.022 3.978 13 C 0.126 3.874 14 H 0.083 0.917 15 O -0.556 6.556 16 C 0.040 3.960 17 N -0.680 5.680 18 C 0.139 3.861 19 C 0.035 3.965 20 N -0.486 5.486 21 C 0.064 3.936 22 C 0.002 3.998 23 C -0.134 4.134 24 C -0.135 4.135 25 C -0.124 4.124 26 C -0.264 4.264 27 S 0.160 5.840 28 H 0.072 0.928 29 H 0.044 0.956 30 H 0.021 0.979 31 H 0.033 0.967 32 H -0.014 1.014 33 H 0.267 0.733 34 H 0.081 0.919 35 H 0.042 0.958 36 H 0.380 0.620 37 H 0.094 0.906 38 H 0.052 0.948 39 H 0.342 0.658 40 H 0.107 0.893 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.040 0.960 44 H 0.077 0.923 45 H 0.076 0.924 46 H 0.050 0.950 47 H 0.067 0.933 48 H 0.045 0.955 49 H 0.045 0.955 50 H 0.069 0.931 51 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.134 -31.196 -19.495 36.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.263 5.263 3 C 0.045 3.955 4 C -0.556 4.556 5 H 0.052 0.948 6 C -0.193 4.193 7 N -0.590 5.590 8 Si 0.775 3.225 9 H -0.194 1.194 10 H -0.207 1.207 11 H -0.169 1.169 12 C -0.107 4.107 13 C 0.066 3.934 14 H 0.101 0.899 15 O -0.362 6.362 16 C -0.090 4.090 17 N -0.312 5.312 18 C 0.007 3.993 19 C -0.242 4.242 20 N -0.202 5.202 21 C -0.068 4.068 22 C -0.001 4.001 23 C -0.192 4.192 24 C -0.192 4.192 25 C -0.181 4.181 26 C -0.404 4.404 27 S 0.415 5.585 28 H 0.091 0.909 29 H 0.063 0.937 30 H 0.039 0.961 31 H 0.051 0.949 32 H 0.003 0.997 33 H 0.075 0.925 34 H 0.100 0.900 35 H 0.060 0.940 36 H 0.228 0.772 37 H 0.112 0.888 38 H 0.070 0.930 39 H 0.160 0.840 40 H 0.125 0.875 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.059 0.941 44 H 0.096 0.904 45 H 0.095 0.905 46 H 0.070 0.930 47 H 0.086 0.914 48 H 0.064 0.936 49 H 0.064 0.936 50 H 0.088 0.912 51 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 0.856 -31.239 -18.149 36.139 hybrid contribution -0.870 1.466 -1.748 2.442 sum -0.014 -29.773 -19.897 35.810 Atomic orbital electron populations 1.22186 0.87992 1.00911 0.99607 1.61718 1.07872 1.14400 1.42330 1.19961 0.95350 0.85859 0.94357 1.21293 1.34818 0.97525 1.01974 0.94808 1.25914 0.97064 0.98449 0.97856 1.70065 1.48669 1.13840 1.26459 0.85654 0.79154 0.78673 0.79043 1.19417 1.20701 1.16907 1.22895 1.01047 0.94907 0.91878 1.21733 0.97937 0.89340 0.84385 0.89869 1.86585 1.26078 1.84977 1.38526 1.22586 1.01975 0.87187 0.97231 1.60394 1.16973 1.10537 1.43253 1.20464 1.00857 0.84491 0.93492 1.27010 0.94907 1.02017 1.00298 1.66099 1.17192 1.14201 1.22705 1.20427 0.98662 0.88483 0.99247 1.19272 0.89640 0.95240 0.95948 1.21863 0.98888 1.01406 0.97054 1.21894 1.02379 0.94235 1.00723 1.21644 1.00106 0.98983 0.97409 1.27127 0.98820 1.06125 1.08291 1.83971 1.23474 1.00840 1.50179 0.90933 0.93737 0.96088 0.94929 0.99686 0.92458 0.90015 0.93994 0.77244 0.88814 0.92994 0.83994 0.87451 0.92004 0.91896 0.94057 0.90364 0.90500 0.93044 0.91396 0.93604 0.93619 0.91228 0.78773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.62 9.14 127.69 1.17 2.79 16 2 N -0.54 -22.21 4.62 -927.06 -4.28 -26.49 16 3 C 0.17 8.22 3.79 85.56 0.32 8.55 16 4 C -0.52 -30.52 9.01 25.60 0.23 -30.29 16 5 H 0.03 2.25 7.37 -2.91 -0.02 2.23 16 6 C 0.00 0.24 5.47 84.66 0.46 0.71 16 7 N -0.95 -60.23 13.96 21.45 0.30 -59.93 16 8 Si 0.95 44.01 27.47 68.60 1.88 45.90 16 9 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 10 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 11 H -0.25 -10.38 6.54 99.48 0.65 -9.73 16 12 C 0.02 0.64 4.62 86.30 0.40 1.04 16 13 C 0.13 3.17 3.01 30.60 0.09 3.26 16 14 H 0.08 2.25 6.55 -2.39 -0.02 2.23 16 15 O -0.56 -16.40 13.15 -148.98 -1.96 -18.36 16 16 C 0.04 0.72 5.32 86.30 0.46 1.18 16 17 N -0.68 -12.86 6.44 -517.91 -3.33 -16.20 16 18 C 0.14 2.24 6.26 85.56 0.54 2.77 16 19 C 0.04 0.66 6.90 88.52 0.61 1.27 16 20 N -0.49 -10.17 9.55 -179.40 -1.71 -11.89 16 21 C 0.06 1.14 5.41 41.52 0.22 1.36 16 22 C 0.00 0.03 0.90 -52.93 -0.05 -0.02 16 23 C -0.13 -1.68 8.43 71.98 0.61 -1.08 16 24 C -0.13 -1.29 8.13 71.98 0.58 -0.70 16 25 C -0.12 -1.87 7.91 71.98 0.57 -1.30 16 26 C -0.26 -3.96 10.40 66.78 0.69 -3.27 16 27 S 0.16 2.53 23.18 -56.49 -1.31 1.22 16 28 H 0.07 2.48 6.47 -2.39 -0.02 2.47 16 29 H 0.04 2.04 6.76 -2.39 -0.02 2.02 16 30 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.03 1.52 6.99 -2.38 -0.02 1.51 16 32 H -0.01 -0.68 7.55 -2.39 -0.02 -0.70 16 33 H 0.27 15.71 8.31 -92.71 -0.77 14.93 16 34 H 0.08 2.26 7.93 -2.39 -0.02 2.24 16 35 H 0.04 1.15 8.12 -2.38 -0.02 1.14 16 36 H 0.38 8.99 9.05 -74.06 -0.67 8.32 16 37 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.34 7.16 8.72 -89.69 -0.78 6.38 16 40 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 43 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 44 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 45 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 46 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 47 H 0.07 0.51 7.15 -2.39 -0.02 0.49 16 48 H 0.04 0.85 7.98 -2.39 -0.02 0.83 16 49 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 50 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 51 H 0.20 1.89 7.31 -2.91 -0.02 1.86 16 Total: -1.00 -72.57 417.80 -4.09 -76.66 By element: Atomic # 1 Polarization: 23.39 SS G_CDS: -0.59 Total: 22.80 kcal Atomic # 6 Polarization: -20.63 SS G_CDS: 6.91 Total: -13.72 kcal Atomic # 7 Polarization: -105.47 SS G_CDS: -9.03 Total: -114.50 kcal Atomic # 8 Polarization: -16.40 SS G_CDS: -1.96 Total: -18.36 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 1.88 Total: 45.90 kcal Atomic # 16 Polarization: 2.53 SS G_CDS: -1.31 Total: 1.22 kcal Total: -72.57 -4.09 -76.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571432841.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.376 kcal (2) G-P(sol) polarization free energy of solvation -72.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds