Wall clock time and date at job start Wed Apr 1 2020 00:30:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39925 * 125.87543 * 2 1 4 4 C 1.35321 * 107.93076 * 180.02562 * 3 2 1 5 5 C 1.50700 * 126.14414 * 180.27102 * 4 3 2 6 6 N 1.35235 * 107.70968 * 359.97438 * 4 3 2 7 7 C 1.40179 * 126.04843 * 180.02562 * 6 4 3 8 8 C 1.38843 * 120.06903 * 324.72709 * 7 6 4 9 9 C 1.38118 * 119.93110 * 179.79509 * 8 7 6 10 10 C 1.38282 * 120.06617 * 0.45922 * 9 8 7 11 11 C 1.50703 * 119.93341 * 179.77109 * 10 9 8 12 12 N 1.46901 * 109.47144 * 270.02634 * 11 10 9 13 13 C 1.47444 * 111.00289 * 69.86720 * 12 11 10 14 14 C 1.54321 * 107.23033 * 123.25671 * 13 12 11 15 15 C 1.55144 * 103.02011 * 22.28935 * 14 13 12 16 16 O 1.42900 * 110.98855 * 82.46972 * 15 14 13 17 17 C 1.50692 * 110.99258 * 206.25006 * 15 14 13 18 18 H 1.08003 * 120.00011 * 118.53893 * 17 15 14 19 19 C 1.37871 * 120.00303 * 298.54658 * 17 15 14 20 20 N 1.31516 * 120.00086 * 0.02562 * 19 17 15 21 21 Si 1.86802 * 120.00454 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.46983 * 89.99664 * 21 19 17 23 23 H 1.48499 * 109.47292 * 210.00254 * 21 19 17 24 24 H 1.48506 * 109.46796 * 330.00080 * 21 19 17 25 25 C 1.47847 * 111.00056 * 190.71610 * 12 11 10 26 26 C 1.38274 * 120.13711 * 359.79044 * 10 9 8 27 27 C 1.38121 * 120.06435 * 359.97438 * 26 10 9 28 28 N 1.30877 * 125.87958 * 180.02562 * 2 1 3 29 29 H 1.09005 * 109.46822 * 269.99635 * 1 2 3 30 30 H 1.08997 * 109.47303 * 29.99673 * 1 2 3 31 31 H 1.09005 * 109.47066 * 150.00030 * 1 2 3 32 32 H 1.07995 * 126.03154 * 0.04632 * 3 2 1 33 33 H 1.09005 * 109.46566 * 269.68295 * 5 4 3 34 34 H 1.08997 * 109.47232 * 29.68149 * 5 4 3 35 35 H 1.08998 * 109.47152 * 149.68438 * 5 4 3 36 36 H 1.07993 * 120.03176 * 0.02562 * 8 7 6 37 37 H 1.07997 * 119.96397 * 180.23268 * 9 8 7 38 38 H 1.09006 * 109.47240 * 30.01735 * 11 10 9 39 39 H 1.08993 * 109.47654 * 150.02102 * 11 10 9 40 40 H 1.08994 * 109.89147 * 242.66906 * 13 12 11 41 41 H 1.08999 * 109.88939 * 3.69635 * 13 12 11 42 42 H 1.09007 * 110.70386 * 140.66850 * 14 13 12 43 43 H 1.08993 * 110.71006 * 263.90612 * 14 13 12 44 44 H 0.96697 * 114.00146 * 61.46103 * 16 15 14 45 45 H 0.97000 * 120.00286 * 180.02562 * 20 19 17 46 46 H 1.08994 * 110.37137 * 332.46154 * 25 12 11 47 47 H 1.08997 * 110.37044 * 94.80559 * 25 12 11 48 48 H 1.08002 * 119.97054 * 179.97438 * 26 10 9 49 49 H 1.08005 * 120.03243 * 179.97438 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3270 1.1338 0.0000 4 6 3.6144 0.7169 -0.0006 5 6 4.8350 1.6008 0.0050 6 7 3.6089 -0.6355 -0.0004 7 6 4.7388 -1.4650 -0.0003 8 6 5.8801 -1.0860 -0.6943 9 6 6.9933 -1.9036 -0.6888 10 6 6.9687 -3.1029 -0.0009 11 6 8.1833 -3.9950 -0.0012 12 7 8.1074 -4.9253 -1.1356 13 6 8.2929 -4.2153 -2.4145 14 6 9.4826 -4.8804 -3.1381 15 6 9.5424 -6.2890 -2.4907 16 8 8.6031 -7.1744 -3.1038 17 6 10.9372 -6.8554 -2.5580 18 1 11.4705 -7.0870 -1.6478 19 6 11.5327 -7.0777 -3.7814 20 7 10.8836 -6.7951 -4.8898 21 14 13.2620 -7.7791 -3.8649 22 1 13.1932 -9.2619 -3.9077 23 1 13.9404 -7.2795 -5.0877 24 1 14.0272 -7.3535 -2.6654 25 6 9.1397 -5.9781 -1.0275 26 6 5.8318 -3.4855 0.6869 27 6 4.7171 -2.6699 0.6892 28 7 2.2741 -1.0604 -0.0005 29 1 -0.3633 -0.0001 1.0277 30 1 -0.3634 0.8900 -0.5138 31 1 -0.3633 -0.8900 -0.5139 32 1 1.9916 2.1604 0.0007 33 1 5.1336 1.8141 -1.0214 34 1 4.6050 2.5345 0.5180 35 1 5.6490 1.0929 0.5222 36 1 5.8986 -0.1512 -1.2347 37 1 7.8826 -1.6075 -1.2253 38 1 9.0822 -3.3850 -0.0912 39 1 8.2194 -4.5600 0.9302 40 1 7.3924 -4.3044 -3.0221 41 1 8.5108 -3.1640 -2.2268 42 1 9.2893 -4.9560 -4.2082 43 1 10.4045 -4.3303 -2.9499 44 1 8.7595 -7.3223 -4.0465 45 1 11.3024 -6.9519 -5.7505 46 1 9.9993 -5.6105 -0.4673 47 1 8.7266 -6.8669 -0.5506 48 1 5.8154 -4.4230 1.2230 49 1 3.8293 -2.9695 1.2263 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592149493.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:30:00 Heat of formation + Delta-G solvation = 58.135390 kcal Electronic energy + Delta-G solvation = -29020.638989 eV Core-core repulsion = 25142.080679 eV Total energy + Delta-G solvation = -3878.558310 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.78592 -39.54044 -38.12163 -35.19236 -34.07681 -32.60895 -32.14669 -31.35760 -30.89275 -29.46292 -28.16434 -27.61244 -27.32138 -25.21382 -23.94066 -23.05518 -21.75693 -20.42629 -19.90455 -19.73761 -19.55289 -17.66881 -17.06249 -15.99753 -15.70501 -15.41166 -14.96244 -14.90429 -14.73650 -14.55372 -14.02872 -13.97509 -13.89033 -13.72390 -13.45462 -13.31956 -13.05095 -12.82758 -12.71628 -12.58540 -12.42571 -12.24086 -12.10238 -11.79963 -11.33376 -11.32265 -11.25064 -11.06206 -10.90559 -10.71928 -10.69750 -10.43904 -10.27906 -9.87376 -9.84768 -9.21714 -9.06468 -9.01713 -8.61592 -8.19223 -8.05784 -7.63679 -6.22662 -4.31151 0.80318 1.27575 1.89466 2.24886 2.50953 3.20530 3.27802 3.30269 3.59175 4.27524 4.30232 4.36000 4.63930 4.71883 4.77969 4.82356 4.93193 5.05379 5.06697 5.13034 5.21606 5.30705 5.33811 5.35179 5.41494 5.51416 5.52926 5.62451 5.65553 5.73032 5.83390 5.89517 5.93194 5.95458 6.07654 6.14485 6.17765 6.22308 6.44850 6.48814 6.60884 6.65352 6.67279 6.85324 7.05089 7.10233 7.39155 7.47523 7.52969 7.59913 7.71088 7.80724 8.14867 8.71219 9.37634 9.51128 10.84149 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.026233 B = 0.002038 C = 0.002020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.111658 B =13737.124147 C =13860.560105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.074 3.926 3 C -0.270 4.270 4 C 0.088 3.912 5 C -0.098 4.098 6 N -0.317 5.317 7 C 0.139 3.861 8 C -0.130 4.130 9 C -0.093 4.093 10 C -0.060 4.060 11 C 0.084 3.916 12 N -0.521 5.521 13 C 0.043 3.957 14 C -0.144 4.144 15 C 0.252 3.748 16 O -0.579 6.579 17 C -0.536 4.536 18 H 0.061 0.939 19 C 0.071 3.929 20 N -0.894 5.894 21 Si 0.899 3.101 22 H -0.278 1.278 23 H -0.286 1.286 24 H -0.274 1.274 25 C 0.058 3.942 26 C -0.081 4.081 27 C -0.109 4.109 28 N -0.288 5.288 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.149 0.851 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.077 0.923 36 H 0.129 0.871 37 H 0.131 0.869 38 H 0.043 0.957 39 H 0.079 0.921 40 H 0.063 0.937 41 H 0.038 0.962 42 H 0.077 0.923 43 H 0.055 0.945 44 H 0.377 0.623 45 H 0.266 0.734 46 H 0.048 0.952 47 H 0.072 0.928 48 H 0.133 0.867 49 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.146 17.393 10.000 23.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.093 4.093 3 C -0.299 4.299 4 C -0.037 4.037 5 C -0.156 4.156 6 N -0.093 5.093 7 C 0.048 3.952 8 C -0.150 4.150 9 C -0.112 4.112 10 C -0.061 4.061 11 C -0.044 4.044 12 N -0.245 5.245 13 C -0.084 4.084 14 C -0.184 4.184 15 C 0.211 3.789 16 O -0.387 6.387 17 C -0.575 4.575 18 H 0.079 0.921 19 C -0.131 4.131 20 N -0.533 5.533 21 Si 0.727 3.273 22 H -0.204 1.204 23 H -0.211 1.211 24 H -0.199 1.199 25 C -0.068 4.068 26 C -0.100 4.100 27 C -0.129 4.129 28 N -0.109 5.109 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.167 0.833 33 H 0.101 0.899 34 H 0.104 0.896 35 H 0.096 0.904 36 H 0.146 0.854 37 H 0.149 0.851 38 H 0.061 0.939 39 H 0.098 0.902 40 H 0.082 0.918 41 H 0.056 0.944 42 H 0.096 0.904 43 H 0.073 0.927 44 H 0.226 0.774 45 H 0.076 0.924 46 H 0.066 0.934 47 H 0.090 0.910 48 H 0.151 0.849 49 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -13.762 15.837 10.438 23.434 hybrid contribution 1.942 0.967 -0.848 2.329 sum -11.820 16.804 9.590 22.673 Atomic orbital electron populations 1.20184 0.86416 1.03414 1.02995 1.22454 0.97098 0.90762 0.98975 1.21132 0.90756 0.99837 1.18126 1.21222 0.97591 0.84025 1.00887 1.20630 0.93323 0.98109 1.03506 1.45730 1.04205 1.03473 1.55878 1.17414 0.84552 0.92552 1.00708 1.20960 0.92666 1.01417 0.99970 1.20966 0.97949 0.93821 0.98464 1.19999 0.96060 0.94187 0.95900 1.21225 0.93148 0.93696 0.96356 1.63657 1.48867 1.11158 1.00829 1.22896 0.99458 0.95210 0.90864 1.23264 0.95033 0.98934 1.01133 1.19525 0.86967 0.85745 0.86615 1.86147 1.55853 1.68344 1.28313 1.21535 0.99574 1.43489 0.92855 0.92117 1.25004 0.98184 0.94372 0.95572 1.69740 1.38062 1.47877 0.97652 0.86483 0.83856 0.79426 0.77562 1.20422 1.21130 1.19853 1.23018 0.91393 0.93370 0.99057 1.20953 0.91503 0.98866 0.98673 1.20932 0.99311 0.93324 0.99336 1.77492 0.85492 1.22461 1.25449 0.90455 0.90360 0.90795 0.83292 0.89893 0.89555 0.90434 0.85366 0.85101 0.93914 0.90215 0.91844 0.94410 0.90446 0.92653 0.77417 0.92378 0.93415 0.91004 0.84885 0.85225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.54 10.45 36.01 0.38 -0.16 16 2 C 0.07 0.85 7.22 -82.37 -0.59 0.25 16 3 C -0.27 -2.78 10.65 -39.99 -0.43 -3.21 16 4 C 0.09 0.96 6.76 -82.13 -0.56 0.41 16 5 C -0.10 -0.71 8.60 36.01 0.31 -0.40 16 6 N -0.32 -4.28 3.73 -6.98 -0.03 -4.30 16 7 C 0.14 1.86 6.27 -83.59 -0.52 1.34 16 8 C -0.13 -1.56 8.29 -39.40 -0.33 -1.89 16 9 C -0.09 -1.17 8.73 -39.61 -0.35 -1.51 16 10 C -0.06 -0.83 5.11 -104.59 -0.53 -1.36 16 11 C 0.08 1.26 4.75 -4.97 -0.02 1.23 16 12 N -0.52 -9.86 5.15 -232.69 -1.20 -11.06 16 13 C 0.04 0.84 6.26 -2.83 -0.02 0.82 16 14 C -0.14 -3.28 5.37 -24.90 -0.13 -3.42 16 15 C 0.25 6.19 0.87 -89.63 -0.08 6.11 16 16 O -0.58 -15.21 13.16 -35.23 -0.46 -15.68 16 17 C -0.54 -14.18 8.27 -34.45 -0.28 -14.47 16 18 H 0.06 1.59 7.79 -52.48 -0.41 1.18 16 19 C 0.07 1.87 5.29 -17.82 -0.09 1.77 16 20 N -0.89 -23.72 10.75 55.43 0.60 -23.13 16 21 Si 0.90 20.46 29.54 -169.99 -5.02 15.44 16 22 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 23 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 24 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 25 C 0.06 1.24 5.86 -2.30 -0.01 1.23 16 26 C -0.08 -1.06 9.69 -39.61 -0.38 -1.45 16 27 C -0.11 -1.46 9.76 -39.40 -0.38 -1.84 16 28 N -0.29 -4.13 12.34 33.69 0.42 -3.72 16 29 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.15 1.11 8.06 -52.49 -0.42 0.69 16 33 H 0.08 0.51 7.74 -51.93 -0.40 0.11 16 34 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.08 0.58 6.92 -51.93 -0.36 0.22 16 36 H 0.13 1.29 6.13 -52.49 -0.32 0.96 16 37 H 0.13 1.50 6.91 -52.49 -0.36 1.14 16 38 H 0.04 0.62 7.91 -51.93 -0.41 0.21 16 39 H 0.08 1.09 8.01 -51.93 -0.42 0.68 16 40 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 41 H 0.04 0.64 5.48 -51.93 -0.28 0.35 16 42 H 0.08 1.88 7.54 -51.93 -0.39 1.49 16 43 H 0.05 1.27 8.03 -51.93 -0.42 0.86 16 44 H 0.38 9.97 7.56 45.56 0.34 10.31 16 45 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 46 H 0.05 0.97 7.70 -51.93 -0.40 0.57 16 47 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 48 H 0.13 1.58 8.06 -52.49 -0.42 1.16 16 49 H 0.13 1.68 8.06 -52.48 -0.42 1.26 16 LS Contribution 393.23 15.07 5.93 5.93 Total: -1.00 -30.39 393.23 -10.57 -40.97 By element: Atomic # 1 Polarization: 18.87 SS G_CDS: -6.77 Total: 12.10 kcal Atomic # 6 Polarization: -12.52 SS G_CDS: -4.03 Total: -16.55 kcal Atomic # 7 Polarization: -41.99 SS G_CDS: -0.21 Total: -42.20 kcal Atomic # 8 Polarization: -15.21 SS G_CDS: -0.46 Total: -15.68 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -30.39 -10.57 -40.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592149493.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.101 kcal (2) G-P(sol) polarization free energy of solvation -30.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds