Wall clock time and date at job start Wed Apr 1 2020 00:29:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39925 * 125.87543 * 2 1 4 4 C 1.35321 * 107.93076 * 180.02562 * 3 2 1 5 5 C 1.50700 * 126.14414 * 180.27102 * 4 3 2 6 6 N 1.35235 * 107.70968 * 359.97438 * 4 3 2 7 7 C 1.40179 * 126.04843 * 180.02562 * 6 4 3 8 8 C 1.38843 * 120.06903 * 324.72709 * 7 6 4 9 9 C 1.38118 * 119.93110 * 179.79509 * 8 7 6 10 10 C 1.38282 * 120.06617 * 0.45922 * 9 8 7 11 11 C 1.50703 * 119.93341 * 179.77109 * 10 9 8 12 12 N 1.46901 * 109.47144 * 270.02634 * 11 10 9 13 13 C 1.47444 * 111.00289 * 69.86720 * 12 11 10 14 14 C 1.54321 * 107.23033 * 123.25671 * 13 12 11 15 15 C 1.55144 * 103.02011 * 22.28935 * 14 13 12 16 16 O 1.42900 * 110.98855 * 82.46972 * 15 14 13 17 17 C 1.50692 * 110.99258 * 206.25006 * 15 14 13 18 18 H 1.08003 * 120.00011 * 118.53893 * 17 15 14 19 19 C 1.37871 * 120.00303 * 298.54658 * 17 15 14 20 20 N 1.31516 * 120.00086 * 0.02562 * 19 17 15 21 21 Si 1.86802 * 120.00454 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.46983 * 89.99664 * 21 19 17 23 23 H 1.48499 * 109.47292 * 210.00254 * 21 19 17 24 24 H 1.48506 * 109.46796 * 330.00080 * 21 19 17 25 25 C 1.47847 * 111.00056 * 190.71610 * 12 11 10 26 26 C 1.38274 * 120.13711 * 359.79044 * 10 9 8 27 27 C 1.38121 * 120.06435 * 359.97438 * 26 10 9 28 28 N 1.30877 * 125.87958 * 180.02562 * 2 1 3 29 29 H 1.09005 * 109.46822 * 269.99635 * 1 2 3 30 30 H 1.08997 * 109.47303 * 29.99673 * 1 2 3 31 31 H 1.09005 * 109.47066 * 150.00030 * 1 2 3 32 32 H 1.07995 * 126.03154 * 0.04632 * 3 2 1 33 33 H 1.09005 * 109.46566 * 269.68295 * 5 4 3 34 34 H 1.08997 * 109.47232 * 29.68149 * 5 4 3 35 35 H 1.08998 * 109.47152 * 149.68438 * 5 4 3 36 36 H 1.07993 * 120.03176 * 0.02562 * 8 7 6 37 37 H 1.07997 * 119.96397 * 180.23268 * 9 8 7 38 38 H 1.09006 * 109.47240 * 30.01735 * 11 10 9 39 39 H 1.08993 * 109.47654 * 150.02102 * 11 10 9 40 40 H 1.08994 * 109.89147 * 242.66906 * 13 12 11 41 41 H 1.08999 * 109.88939 * 3.69635 * 13 12 11 42 42 H 1.09007 * 110.70386 * 140.66850 * 14 13 12 43 43 H 1.08993 * 110.71006 * 263.90612 * 14 13 12 44 44 H 0.96697 * 114.00146 * 61.46103 * 16 15 14 45 45 H 0.97000 * 120.00286 * 180.02562 * 20 19 17 46 46 H 1.08994 * 110.37137 * 332.46154 * 25 12 11 47 47 H 1.08997 * 110.37044 * 94.80559 * 25 12 11 48 48 H 1.08002 * 119.97054 * 179.97438 * 26 10 9 49 49 H 1.08005 * 120.03243 * 179.97438 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3270 1.1338 0.0000 4 6 3.6144 0.7169 -0.0006 5 6 4.8350 1.6008 0.0050 6 7 3.6089 -0.6355 -0.0004 7 6 4.7388 -1.4650 -0.0003 8 6 5.8801 -1.0860 -0.6943 9 6 6.9933 -1.9036 -0.6888 10 6 6.9687 -3.1029 -0.0009 11 6 8.1833 -3.9950 -0.0012 12 7 8.1074 -4.9253 -1.1356 13 6 8.2929 -4.2153 -2.4145 14 6 9.4826 -4.8804 -3.1381 15 6 9.5424 -6.2890 -2.4907 16 8 8.6031 -7.1744 -3.1038 17 6 10.9372 -6.8554 -2.5580 18 1 11.4705 -7.0870 -1.6478 19 6 11.5327 -7.0777 -3.7814 20 7 10.8836 -6.7951 -4.8898 21 14 13.2620 -7.7791 -3.8649 22 1 13.1932 -9.2619 -3.9077 23 1 13.9404 -7.2795 -5.0877 24 1 14.0272 -7.3535 -2.6654 25 6 9.1397 -5.9781 -1.0275 26 6 5.8318 -3.4855 0.6869 27 6 4.7171 -2.6699 0.6892 28 7 2.2741 -1.0604 -0.0005 29 1 -0.3633 -0.0001 1.0277 30 1 -0.3634 0.8900 -0.5138 31 1 -0.3633 -0.8900 -0.5139 32 1 1.9916 2.1604 0.0007 33 1 5.1336 1.8141 -1.0214 34 1 4.6050 2.5345 0.5180 35 1 5.6490 1.0929 0.5222 36 1 5.8986 -0.1512 -1.2347 37 1 7.8826 -1.6075 -1.2253 38 1 9.0822 -3.3850 -0.0912 39 1 8.2194 -4.5600 0.9302 40 1 7.3924 -4.3044 -3.0221 41 1 8.5108 -3.1640 -2.2268 42 1 9.2893 -4.9560 -4.2082 43 1 10.4045 -4.3303 -2.9499 44 1 8.7595 -7.3223 -4.0465 45 1 11.3024 -6.9519 -5.7505 46 1 9.9993 -5.6105 -0.4673 47 1 8.7266 -6.8669 -0.5506 48 1 5.8154 -4.4230 1.2230 49 1 3.8293 -2.9695 1.2263 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592149493.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:29:59 Heat of formation + Delta-G solvation = 39.375802 kcal Electronic energy + Delta-G solvation = -29021.452466 eV Core-core repulsion = 25142.080679 eV Total energy + Delta-G solvation = -3879.371787 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.62754 -40.70593 -39.60721 -36.74351 -35.17991 -34.17910 -33.46352 -32.45862 -31.88647 -30.70026 -29.85632 -28.73756 -28.03834 -26.73954 -25.42897 -24.03006 -22.84811 -21.54677 -21.40237 -21.13260 -20.57619 -19.01827 -18.53429 -17.13211 -16.90902 -16.86877 -16.68757 -16.19327 -15.96704 -15.69577 -15.54395 -14.84636 -14.71120 -14.66568 -14.45536 -14.26057 -14.15644 -13.97189 -13.94320 -13.64051 -13.55603 -13.29209 -13.20033 -13.11639 -12.94575 -12.81805 -12.74641 -12.56962 -12.35240 -12.24545 -12.08033 -12.00391 -11.62636 -11.51557 -11.09964 -10.77622 -10.59319 -10.08797 -10.02330 -9.86141 -9.20323 -9.02745 -8.21125 -6.37092 -0.15440 0.30190 1.01260 1.40000 1.40488 1.42520 1.51199 1.73213 2.37678 2.57623 3.03298 3.31585 3.54326 3.64219 3.74464 3.81178 3.87395 4.02318 4.04811 4.10312 4.20602 4.31989 4.36193 4.44303 4.47643 4.56175 4.59542 4.63976 4.70669 4.74100 4.77470 4.79187 4.84065 4.91960 4.97152 5.00699 5.06889 5.08926 5.15305 5.19851 5.28411 5.34107 5.48538 5.55986 5.57623 5.67364 5.77807 5.80969 5.96984 6.21314 6.23821 6.29057 6.68455 6.69132 7.34462 7.45235 8.83912 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.026233 B = 0.002038 C = 0.002020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.111658 B =13737.124147 C =13860.560105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.068 3.932 3 C -0.276 4.276 4 C 0.079 3.921 5 C -0.096 4.096 6 N -0.335 5.335 7 C 0.131 3.869 8 C -0.126 4.126 9 C -0.091 4.091 10 C -0.074 4.074 11 C 0.086 3.914 12 N -0.529 5.529 13 C 0.055 3.945 14 C -0.135 4.135 15 C 0.231 3.769 16 O -0.590 6.590 17 C -0.559 4.559 18 H 0.056 0.944 19 C 0.029 3.971 20 N -0.911 5.911 21 Si 0.959 3.041 22 H -0.279 1.279 23 H -0.281 1.281 24 H -0.269 1.269 25 C 0.067 3.933 26 C -0.082 4.082 27 C -0.122 4.122 28 N -0.340 5.340 29 H 0.090 0.910 30 H 0.102 0.898 31 H 0.068 0.932 32 H 0.179 0.821 33 H 0.097 0.903 34 H 0.109 0.891 35 H 0.074 0.926 36 H 0.149 0.851 37 H 0.146 0.854 38 H 0.053 0.947 39 H 0.092 0.908 40 H 0.052 0.948 41 H 0.067 0.933 42 H 0.053 0.947 43 H 0.048 0.952 44 H 0.371 0.629 45 H 0.268 0.732 46 H 0.057 0.943 47 H 0.063 0.937 48 H 0.140 0.860 49 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.038 19.694 10.623 25.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.099 4.099 3 C -0.304 4.304 4 C -0.045 4.045 5 C -0.154 4.154 6 N -0.112 5.112 7 C 0.040 3.960 8 C -0.146 4.146 9 C -0.110 4.110 10 C -0.075 4.075 11 C -0.041 4.041 12 N -0.253 5.253 13 C -0.072 4.072 14 C -0.174 4.174 15 C 0.192 3.808 16 O -0.397 6.397 17 C -0.597 4.597 18 H 0.074 0.926 19 C -0.172 4.172 20 N -0.551 5.551 21 Si 0.785 3.215 22 H -0.205 1.205 23 H -0.207 1.207 24 H -0.193 1.193 25 C -0.060 4.060 26 C -0.101 4.101 27 C -0.142 4.142 28 N -0.161 5.161 29 H 0.109 0.891 30 H 0.121 0.879 31 H 0.087 0.913 32 H 0.196 0.804 33 H 0.116 0.884 34 H 0.128 0.872 35 H 0.093 0.907 36 H 0.167 0.833 37 H 0.163 0.837 38 H 0.072 0.928 39 H 0.110 0.890 40 H 0.070 0.930 41 H 0.085 0.915 42 H 0.072 0.928 43 H 0.067 0.933 44 H 0.219 0.781 45 H 0.077 0.923 46 H 0.075 0.925 47 H 0.082 0.918 48 H 0.158 0.842 49 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -13.667 18.157 11.079 25.282 hybrid contribution 1.804 0.313 -1.021 2.096 sum -11.863 18.470 10.058 24.146 Atomic orbital electron populations 1.20334 0.84077 1.04340 1.04107 1.23166 0.98705 0.90683 0.97306 1.21566 0.90388 1.00876 1.17523 1.21945 0.99315 0.83457 0.99772 1.20773 0.91695 0.98248 1.04702 1.45859 1.03903 1.04382 1.57030 1.17661 0.85186 0.92637 1.00503 1.21138 0.91891 1.02071 0.99502 1.21138 0.98557 0.93370 0.97953 1.19920 0.95686 0.94699 0.97156 1.21274 0.94234 0.93453 0.95178 1.63564 1.47966 1.11916 1.01870 1.22743 0.97322 0.96517 0.90668 1.23059 0.96139 0.98326 0.99917 1.19834 0.86202 0.86146 0.88657 1.86141 1.56527 1.69137 1.27934 1.21816 1.00705 1.44242 0.92962 0.92554 1.25705 1.01551 0.94618 0.95302 1.69835 1.39211 1.48097 0.97911 0.85547 0.79824 0.78481 0.77682 1.20459 1.20671 1.19306 1.22845 0.92256 0.94059 0.96813 1.21042 0.91353 0.99096 0.98645 1.20964 0.99306 0.93932 0.99979 1.77437 0.86386 1.24392 1.27859 0.89137 0.87933 0.91333 0.80413 0.88438 0.87244 0.90686 0.83292 0.83683 0.92839 0.89000 0.92965 0.91470 0.92784 0.93314 0.78119 0.92302 0.92465 0.91832 0.84199 0.85764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.95 10.45 71.24 0.74 -0.20 16 2 C 0.07 1.49 7.22 43.11 0.31 1.80 16 3 C -0.28 -5.12 10.65 22.01 0.23 -4.89 16 4 C 0.08 1.60 6.76 41.36 0.28 1.88 16 5 C -0.10 -1.14 8.60 71.24 0.61 -0.53 16 6 N -0.34 -8.86 3.73 -175.99 -0.66 -9.51 16 7 C 0.13 3.45 6.27 38.09 0.24 3.68 16 8 C -0.13 -2.81 8.29 22.39 0.19 -2.62 16 9 C -0.09 -2.11 8.73 22.25 0.19 -1.91 16 10 C -0.07 -1.91 5.11 -19.84 -0.10 -2.01 16 11 C 0.09 2.42 4.75 85.56 0.41 2.83 16 12 N -0.53 -19.49 5.15 -890.09 -4.58 -24.07 16 13 C 0.06 2.08 6.26 86.65 0.54 2.62 16 14 C -0.14 -6.17 5.37 31.78 0.17 -6.00 16 15 C 0.23 11.49 0.87 -10.15 -0.01 11.48 16 16 O -0.59 -31.72 13.16 -148.98 -1.96 -33.68 16 17 C -0.56 -29.77 8.27 25.60 0.21 -29.56 16 18 H 0.06 2.96 7.79 -2.91 -0.02 2.94 16 19 C 0.03 1.52 5.29 84.65 0.45 1.97 16 20 N -0.91 -48.85 10.75 21.45 0.23 -48.62 16 21 Si 0.96 41.87 29.54 68.60 2.03 43.90 16 22 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 23 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 24 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 25 C 0.07 2.85 5.86 86.77 0.51 3.35 16 26 C -0.08 -2.12 9.69 22.25 0.22 -1.91 16 27 C -0.12 -3.27 9.76 22.39 0.22 -3.05 16 28 N -0.34 -9.76 12.34 -47.33 -0.58 -10.34 16 29 H 0.09 0.98 8.14 -2.38 -0.02 0.96 16 30 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 32 H 0.18 2.07 8.06 -2.91 -0.02 2.05 16 33 H 0.10 0.89 7.74 -2.38 -0.02 0.87 16 34 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.07 0.95 6.92 -2.39 -0.02 0.93 16 36 H 0.15 2.61 6.13 -2.91 -0.02 2.59 16 37 H 0.15 2.89 6.91 -2.91 -0.02 2.87 16 38 H 0.05 1.42 7.91 -2.38 -0.02 1.40 16 39 H 0.09 2.36 8.01 -2.39 -0.02 2.34 16 40 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 41 H 0.07 2.12 5.48 -2.39 -0.01 2.11 16 42 H 0.05 2.68 7.54 -2.38 -0.02 2.66 16 43 H 0.05 2.24 8.03 -2.39 -0.02 2.22 16 44 H 0.37 20.27 7.56 -74.06 -0.56 19.71 16 45 H 0.27 13.70 8.31 -92.71 -0.77 12.93 16 46 H 0.06 2.27 7.70 -2.39 -0.02 2.25 16 47 H 0.06 2.75 8.14 -2.39 -0.02 2.73 16 48 H 0.14 3.28 8.06 -2.91 -0.02 3.26 16 49 H 0.12 3.36 8.06 -2.91 -0.02 3.34 16 Total: -1.00 -66.27 393.23 0.29 -65.99 By element: Atomic # 1 Polarization: 39.00 SS G_CDS: 0.40 Total: 39.40 kcal Atomic # 6 Polarization: -28.47 SS G_CDS: 5.41 Total: -23.05 kcal Atomic # 7 Polarization: -86.96 SS G_CDS: -5.59 Total: -92.55 kcal Atomic # 8 Polarization: -31.72 SS G_CDS: -1.96 Total: -33.68 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.90 kcal Total: -66.27 0.29 -65.99 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592149493.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.362 kcal (2) G-P(sol) polarization free energy of solvation -66.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.987 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds