Wall clock time and date at job start Wed Apr 1 2020 01:13:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46831 * 2 1 4 4 C 1.52994 * 109.47507 * 119.99976 * 2 1 3 5 5 H 1.08994 * 109.51604 * 300.07255 * 4 2 1 6 6 C 1.53242 * 109.49137 * 179.97438 * 4 2 1 7 7 N 1.47089 * 108.51552 * 186.21349 * 6 4 2 8 8 C 1.34777 * 120.87823 * 231.18680 * 7 6 4 9 9 O 1.21669 * 119.99921 * 7.87012 * 8 7 6 10 10 C 1.46888 * 120.00223 * 187.86918 * 8 7 6 11 11 C 1.36118 * 125.43370 * 26.55436 * 10 8 7 12 12 C 1.41704 * 107.74960 * 180.28369 * 11 10 8 13 13 C 1.40015 * 133.35470 * 179.73611 * 12 11 10 14 14 C 1.36579 * 119.83364 * 179.97438 * 13 12 11 15 15 C 1.38851 * 120.59715 * 0.03925 * 14 13 12 16 16 C 1.37847 * 120.63475 * 359.97438 * 15 14 13 17 17 C 1.39081 * 119.81280 * 0.02562 * 16 15 14 18 18 N 1.37837 * 133.16236 * 180.02562 * 17 16 15 19 19 C 1.36894 * 125.62128 * 359.97285 * 18 17 16 20 20 H 1.08004 * 119.99959 * 144.70172 * 19 18 17 21 21 C 1.39009 * 120.00003 * 324.70035 * 19 18 17 22 22 N 1.31348 * 120.00210 * 336.12994 * 21 19 18 23 23 Si 1.86804 * 119.99827 * 156.12388 * 21 19 18 24 24 H 1.48500 * 109.47109 * 270.00171 * 23 21 19 25 25 H 1.48495 * 109.46994 * 30.00213 * 23 21 19 26 26 H 1.48500 * 109.47040 * 150.00552 * 23 21 19 27 27 C 1.47078 * 118.23994 * 51.46074 * 7 6 4 28 28 C 1.53695 * 108.27551 * 308.48296 * 27 7 6 29 29 N 1.46896 * 109.25948 * 54.08283 * 28 27 7 30 30 H 1.08999 * 109.47167 * 299.99212 * 1 2 3 31 31 H 1.08999 * 109.47405 * 59.99752 * 1 2 3 32 32 H 1.09003 * 109.46929 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46802 * 240.00420 * 2 1 3 34 34 H 1.08997 * 109.47160 * 180.02562 * 3 2 1 35 35 H 1.08999 * 109.47328 * 300.00295 * 3 2 1 36 36 H 1.09001 * 109.47085 * 60.00594 * 3 2 1 37 37 H 1.08996 * 109.62736 * 66.50792 * 6 4 2 38 38 H 1.08994 * 109.62959 * 305.92017 * 6 4 2 39 39 H 1.08001 * 126.12937 * 0.02562 * 11 10 8 40 40 H 1.08004 * 120.08419 * 359.97438 * 13 12 11 41 41 H 1.07998 * 119.69931 * 180.02562 * 14 13 12 42 42 H 1.07999 * 119.68293 * 179.97438 * 15 14 13 43 43 H 1.08001 * 120.09403 * 180.02562 * 16 15 14 44 44 H 0.96999 * 119.99669 * 354.69019 * 22 21 19 45 45 H 1.09007 * 109.62442 * 68.24695 * 27 7 6 46 46 H 1.08998 * 109.62867 * 188.82716 * 27 7 6 47 47 H 1.08997 * 109.64868 * 294.07640 * 28 27 7 48 48 H 1.09002 * 109.42013 * 173.94483 * 28 27 7 49 49 H 1.00896 * 111.00278 * 60.90148 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 1.6761 -0.2087 2.1396 6 6 3.5725 -0.7220 1.2492 7 7 4.0391 -1.5461 2.3747 8 6 4.9465 -1.0706 3.2506 9 8 5.2838 0.0974 3.2032 10 6 5.5281 -1.9626 4.2623 11 6 5.6612 -3.3119 4.1420 12 6 6.2594 -3.7949 5.3324 13 6 6.6279 -5.0716 5.7735 14 6 7.2006 -5.2264 7.0037 15 6 7.4211 -4.1280 7.8239 16 6 7.0666 -2.8612 7.4118 17 6 6.4819 -2.6786 6.1632 18 7 6.0301 -1.5655 5.4873 19 6 6.0677 -0.2793 5.9544 20 1 6.2492 0.5380 5.2721 21 6 5.8721 -0.0251 7.3070 22 7 5.2095 -0.8839 8.0476 23 14 6.5518 1.5381 8.0714 24 1 7.9272 1.2868 8.5718 25 1 6.5859 2.6146 7.0492 26 1 5.6826 1.9552 9.2009 27 6 3.4939 -2.9048 2.5154 28 6 1.9603 -2.8159 2.4687 29 7 1.5529 -2.1071 1.2483 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 3.1299 1.4426 -0.0005 35 1 1.6765 1.9564 -0.8899 36 1 1.6766 1.9563 0.8900 37 1 3.9391 0.2979 1.3654 38 1 3.9385 -1.1412 0.3120 39 1 5.3606 -3.9083 3.2932 40 1 6.4597 -5.9319 5.1425 41 1 7.4844 -6.2122 7.3416 42 1 7.8746 -4.2674 8.7941 43 1 7.2425 -2.0129 8.0567 44 1 4.7907 -1.6566 7.6370 45 1 3.8526 -3.5297 1.6974 46 1 3.8087 -3.3287 3.4689 47 1 1.5978 -2.2740 3.3422 48 1 1.5390 -3.8212 2.4632 49 1 1.8633 -2.5989 0.4238 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598572114.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:13:16 Heat of formation + Delta-G solvation = 29.085959 kcal Electronic energy + Delta-G solvation = -30763.065904 eV Core-core repulsion = 26883.247916 eV Total energy + Delta-G solvation = -3879.817988 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -40.86350 -39.70185 -37.75387 -35.98825 -35.43736 -33.97577 -32.96840 -30.78422 -30.17727 -29.11802 -28.19869 -27.40041 -25.86382 -24.75831 -23.81565 -22.90953 -21.65846 -20.88000 -20.28303 -20.09365 -19.11565 -18.08323 -16.40967 -16.05885 -15.70400 -15.58078 -15.30182 -14.98342 -14.76688 -14.33830 -14.18097 -14.02649 -13.82636 -13.69585 -13.29857 -13.14157 -13.11687 -12.91027 -12.60388 -12.34463 -12.28222 -12.12983 -11.88805 -11.56912 -11.39853 -11.29363 -11.16876 -10.94337 -10.89296 -10.85970 -10.61523 -10.51030 -10.42038 -10.34232 -9.93056 -9.34271 -9.14313 -9.00939 -8.77183 -8.00164 -7.54506 -7.04084 -6.80154 -4.48017 1.70437 2.60754 2.94296 3.07831 3.14825 3.18343 3.34926 3.90120 4.04095 4.08032 4.45522 4.61835 4.67747 4.84217 4.89193 4.92873 5.04311 5.17427 5.21183 5.24960 5.33423 5.49709 5.58174 5.61197 5.69139 5.78805 5.81566 5.83863 5.84660 5.88365 5.92999 5.97918 6.00595 6.04099 6.18169 6.25763 6.29096 6.39249 6.51722 6.66972 6.78589 6.86636 6.91444 6.96440 7.27382 7.31228 7.40857 7.48532 7.62117 7.75527 7.79695 7.91230 8.17464 8.68253 8.81546 9.08609 10.07288 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.011993 B = 0.003923 C = 0.003179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2334.132153 B = 7136.044776 C = 8806.078555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.084 4.084 3 C -0.152 4.152 4 C 0.080 3.920 5 H 0.085 0.915 6 C 0.083 3.917 7 N -0.612 5.612 8 C 0.595 3.405 9 O -0.536 6.536 10 C -0.028 4.028 11 C -0.218 4.218 12 C -0.117 4.117 13 C -0.091 4.091 14 C -0.153 4.153 15 C -0.147 4.147 16 C -0.070 4.070 17 C 0.043 3.957 18 N -0.231 5.231 19 C -0.413 4.413 20 H 0.119 0.881 21 C 0.022 3.978 22 N -0.819 5.819 23 Si 1.082 2.918 24 H -0.274 1.274 25 H -0.275 1.275 26 H -0.275 1.275 27 C 0.052 3.948 28 C 0.044 3.956 29 N -0.678 5.678 30 H 0.051 0.949 31 H 0.046 0.954 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.058 0.942 35 H 0.056 0.944 36 H 0.057 0.943 37 H 0.097 0.903 38 H 0.060 0.940 39 H 0.133 0.867 40 H 0.105 0.895 41 H 0.105 0.895 42 H 0.109 0.891 43 H 0.121 0.879 44 H 0.289 0.711 45 H 0.062 0.938 46 H 0.121 0.879 47 H 0.078 0.922 48 H 0.087 0.913 49 H 0.337 0.663 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.901 -3.370 -11.076 12.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.103 4.103 3 C -0.210 4.210 4 C -0.031 4.031 5 H 0.103 0.897 6 C -0.041 4.041 7 N -0.347 5.347 8 C 0.386 3.614 9 O -0.412 6.412 10 C -0.146 4.146 11 C -0.245 4.245 12 C -0.122 4.122 13 C -0.110 4.110 14 C -0.172 4.172 15 C -0.167 4.167 16 C -0.090 4.090 17 C -0.071 4.071 18 N 0.109 4.891 19 C -0.542 4.542 20 H 0.136 0.864 21 C -0.193 4.193 22 N -0.445 5.445 23 Si 0.905 3.095 24 H -0.200 1.200 25 H -0.200 1.200 26 H -0.200 1.200 27 C -0.072 4.072 28 C -0.086 4.086 29 N -0.306 5.306 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.115 0.885 38 H 0.078 0.922 39 H 0.151 0.849 40 H 0.123 0.877 41 H 0.123 0.877 42 H 0.127 0.873 43 H 0.139 0.861 44 H 0.101 0.899 45 H 0.081 0.919 46 H 0.139 0.861 47 H 0.096 0.904 48 H 0.105 0.895 49 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -6.222 -1.396 -9.277 11.257 hybrid contribution 0.745 -1.122 -1.649 2.129 sum -5.476 -2.518 -10.925 12.478 Atomic orbital electron populations 1.21697 0.94315 1.02479 1.00864 1.21054 0.96734 0.95799 0.96743 1.21906 1.01405 0.95685 1.01979 1.22006 0.91789 0.89956 0.99381 0.89654 1.22316 0.95513 0.97887 0.88368 1.47676 1.43095 1.15563 1.28415 1.17241 0.78070 0.86226 0.79849 1.90733 1.61381 1.17256 1.71875 1.19544 1.09761 0.92679 0.92631 1.20458 1.12911 0.91887 0.99256 1.17910 1.06188 0.92902 0.95206 1.20055 1.00251 0.94619 0.96052 1.20329 1.03844 0.97653 0.95349 1.20566 1.04587 0.92085 0.99489 1.20338 0.97819 0.97382 0.93412 1.18305 1.06084 0.86433 0.96290 1.40150 1.33620 1.05480 1.09826 1.21168 1.53335 0.82765 0.96943 0.86376 1.26949 0.94405 1.05097 0.92892 1.70614 1.21580 1.12282 1.40062 0.83311 0.76919 0.73064 0.76192 1.19978 1.20026 1.20004 1.23161 0.95209 0.83697 1.05128 1.22510 0.92920 0.99558 0.93634 1.60666 1.62800 1.02439 1.04723 0.93030 0.93466 0.91485 0.91353 0.92299 0.92522 0.92380 0.88452 0.92158 0.84947 0.87695 0.87705 0.87321 0.86069 0.89901 0.91946 0.86149 0.90395 0.89519 0.84542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 9.04 37.16 0.34 -0.93 16 2 C -0.08 -0.82 2.65 -90.62 -0.24 -1.06 16 3 C -0.15 -1.50 8.85 37.16 0.33 -1.18 16 4 C 0.08 0.96 2.14 -67.59 -0.14 0.81 16 5 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 6 C 0.08 1.18 5.32 -3.60 -0.02 1.17 16 7 N -0.61 -10.43 3.00 -173.64 -0.52 -10.95 16 8 C 0.59 13.28 7.49 -12.76 -0.10 13.18 16 9 O -0.54 -13.57 14.71 5.22 0.08 -13.49 16 10 C -0.03 -0.67 6.30 -82.25 -0.52 -1.19 16 11 C -0.22 -4.59 8.39 -39.02 -0.33 -4.91 16 12 C -0.12 -2.63 6.16 -106.89 -0.66 -3.29 16 13 C -0.09 -1.77 10.06 -39.51 -0.40 -2.16 16 14 C -0.15 -2.85 9.97 -39.95 -0.40 -3.25 16 15 C -0.15 -2.98 10.02 -39.50 -0.40 -3.37 16 16 C -0.07 -1.66 8.41 -39.41 -0.33 -1.99 16 17 C 0.04 1.07 5.51 -83.84 -0.46 0.60 16 18 N -0.23 -6.09 2.66 -56.08 -0.15 -6.24 16 19 C -0.41 -11.29 9.13 -15.01 -0.14 -11.42 16 20 H 0.12 3.38 6.70 -52.48 -0.35 3.03 16 21 C 0.02 0.56 4.20 -17.47 -0.07 0.49 16 22 N -0.82 -21.99 11.66 55.50 0.65 -21.34 16 23 Si 1.08 22.66 29.98 -169.99 -5.10 17.56 16 24 H -0.27 -5.49 7.11 56.52 0.40 -5.08 16 25 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 26 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 27 C 0.05 0.73 5.13 -3.37 -0.02 0.71 16 28 C 0.04 0.53 6.72 -3.46 -0.02 0.50 16 29 N -0.68 -7.36 5.72 -106.20 -0.61 -7.96 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.64 7.61 -51.93 -0.40 0.24 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.62 6.59 -51.93 -0.34 0.28 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.10 1.57 5.71 -51.93 -0.30 1.27 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.13 2.30 6.11 -52.49 -0.32 1.98 16 40 H 0.10 1.71 8.06 -52.48 -0.42 1.28 16 41 H 0.10 1.61 8.06 -52.49 -0.42 1.19 16 42 H 0.11 1.91 8.06 -52.49 -0.42 1.48 16 43 H 0.12 3.01 6.32 -52.49 -0.33 2.68 16 44 H 0.29 8.13 6.97 -40.82 -0.28 7.84 16 45 H 0.06 0.74 8.12 -51.92 -0.42 0.32 16 46 H 0.12 1.91 4.38 -51.93 -0.23 1.68 16 47 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 48 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 49 H 0.34 3.15 8.78 -39.29 -0.35 2.81 16 LS Contribution 379.26 15.07 5.72 5.72 Total: -1.00 -30.01 379.26 -10.70 -40.71 By element: Atomic # 1 Polarization: 20.48 SS G_CDS: -7.19 Total: 13.29 kcal Atomic # 6 Polarization: -13.72 SS G_CDS: -3.57 Total: -17.29 kcal Atomic # 7 Polarization: -45.86 SS G_CDS: -0.63 Total: -46.49 kcal Atomic # 8 Polarization: -13.57 SS G_CDS: 0.08 Total: -13.49 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.10 Total: 17.56 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -30.01 -10.70 -40.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598572114.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.793 kcal (2) G-P(sol) polarization free energy of solvation -30.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds