Wall clock time and date at job start Wed Apr 1 2020 01:13:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46831 * 2 1 4 4 C 1.52994 * 109.47507 * 119.99976 * 2 1 3 5 5 H 1.08994 * 109.51604 * 300.07255 * 4 2 1 6 6 C 1.53242 * 109.49137 * 179.97438 * 4 2 1 7 7 N 1.47089 * 108.51552 * 186.21349 * 6 4 2 8 8 C 1.34777 * 120.87823 * 231.18680 * 7 6 4 9 9 O 1.21669 * 119.99921 * 7.87012 * 8 7 6 10 10 C 1.46888 * 120.00223 * 187.86918 * 8 7 6 11 11 C 1.36118 * 125.43370 * 26.55436 * 10 8 7 12 12 C 1.41704 * 107.74960 * 180.28369 * 11 10 8 13 13 C 1.40015 * 133.35470 * 179.73611 * 12 11 10 14 14 C 1.36579 * 119.83364 * 179.97438 * 13 12 11 15 15 C 1.38851 * 120.59715 * 0.03925 * 14 13 12 16 16 C 1.37847 * 120.63475 * 359.97438 * 15 14 13 17 17 C 1.39081 * 119.81280 * 0.02562 * 16 15 14 18 18 N 1.37837 * 133.16236 * 180.02562 * 17 16 15 19 19 C 1.36894 * 125.62128 * 359.97285 * 18 17 16 20 20 H 1.08004 * 119.99959 * 144.70172 * 19 18 17 21 21 C 1.39009 * 120.00003 * 324.70035 * 19 18 17 22 22 N 1.31348 * 120.00210 * 336.12994 * 21 19 18 23 23 Si 1.86804 * 119.99827 * 156.12388 * 21 19 18 24 24 H 1.48500 * 109.47109 * 270.00171 * 23 21 19 25 25 H 1.48495 * 109.46994 * 30.00213 * 23 21 19 26 26 H 1.48500 * 109.47040 * 150.00552 * 23 21 19 27 27 C 1.47078 * 118.23994 * 51.46074 * 7 6 4 28 28 C 1.53695 * 108.27551 * 308.48296 * 27 7 6 29 29 N 1.46896 * 109.25948 * 54.08283 * 28 27 7 30 30 H 1.08999 * 109.47167 * 299.99212 * 1 2 3 31 31 H 1.08999 * 109.47405 * 59.99752 * 1 2 3 32 32 H 1.09003 * 109.46929 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46802 * 240.00420 * 2 1 3 34 34 H 1.08997 * 109.47160 * 180.02562 * 3 2 1 35 35 H 1.08999 * 109.47328 * 300.00295 * 3 2 1 36 36 H 1.09001 * 109.47085 * 60.00594 * 3 2 1 37 37 H 1.08996 * 109.62736 * 66.50792 * 6 4 2 38 38 H 1.08994 * 109.62959 * 305.92017 * 6 4 2 39 39 H 1.08001 * 126.12937 * 0.02562 * 11 10 8 40 40 H 1.08004 * 120.08419 * 359.97438 * 13 12 11 41 41 H 1.07998 * 119.69931 * 180.02562 * 14 13 12 42 42 H 1.07999 * 119.68293 * 179.97438 * 15 14 13 43 43 H 1.08001 * 120.09403 * 180.02562 * 16 15 14 44 44 H 0.96999 * 119.99669 * 354.69019 * 22 21 19 45 45 H 1.09007 * 109.62442 * 68.24695 * 27 7 6 46 46 H 1.08998 * 109.62867 * 188.82716 * 27 7 6 47 47 H 1.08997 * 109.64868 * 294.07640 * 28 27 7 48 48 H 1.09002 * 109.42013 * 173.94483 * 28 27 7 49 49 H 1.00896 * 111.00278 * 60.90148 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 1.6761 -0.2087 2.1396 6 6 3.5725 -0.7220 1.2492 7 7 4.0391 -1.5461 2.3747 8 6 4.9465 -1.0706 3.2506 9 8 5.2838 0.0974 3.2032 10 6 5.5281 -1.9626 4.2623 11 6 5.6612 -3.3119 4.1420 12 6 6.2594 -3.7949 5.3324 13 6 6.6279 -5.0716 5.7735 14 6 7.2006 -5.2264 7.0037 15 6 7.4211 -4.1280 7.8239 16 6 7.0666 -2.8612 7.4118 17 6 6.4819 -2.6786 6.1632 18 7 6.0301 -1.5655 5.4873 19 6 6.0677 -0.2793 5.9544 20 1 6.2492 0.5380 5.2721 21 6 5.8721 -0.0251 7.3070 22 7 5.2095 -0.8839 8.0476 23 14 6.5518 1.5381 8.0714 24 1 7.9272 1.2868 8.5718 25 1 6.5859 2.6146 7.0492 26 1 5.6826 1.9552 9.2009 27 6 3.4939 -2.9048 2.5154 28 6 1.9603 -2.8159 2.4687 29 7 1.5529 -2.1071 1.2483 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 3.1299 1.4426 -0.0005 35 1 1.6765 1.9564 -0.8899 36 1 1.6766 1.9563 0.8900 37 1 3.9391 0.2979 1.3654 38 1 3.9385 -1.1412 0.3120 39 1 5.3606 -3.9083 3.2932 40 1 6.4597 -5.9319 5.1425 41 1 7.4844 -6.2122 7.3416 42 1 7.8746 -4.2674 8.7941 43 1 7.2425 -2.0129 8.0567 44 1 4.7907 -1.6566 7.6370 45 1 3.8526 -3.5297 1.6974 46 1 3.8087 -3.3287 3.4689 47 1 1.5978 -2.2740 3.3422 48 1 1.5390 -3.8212 2.4632 49 1 1.8633 -2.5989 0.4238 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598572114.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:13:15 Heat of formation + Delta-G solvation = 11.139883 kcal Electronic energy + Delta-G solvation = -30763.844104 eV Core-core repulsion = 26883.247916 eV Total energy + Delta-G solvation = -3880.596188 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.54999 -41.07100 -39.18550 -37.64755 -36.64370 -35.70681 -34.21132 -32.45002 -31.42366 -30.80734 -29.73845 -28.35068 -27.07075 -26.61891 -25.02781 -24.28286 -23.05367 -22.47500 -21.77079 -21.20467 -20.68714 -19.77033 -17.94495 -17.64306 -17.47122 -16.84543 -16.58718 -16.31516 -15.93479 -15.88057 -15.68982 -15.48476 -15.24551 -14.89830 -14.78086 -14.57581 -14.53477 -14.35967 -13.96415 -13.77144 -13.58955 -13.42705 -12.98733 -12.91684 -12.75867 -12.52652 -12.48571 -12.31783 -12.19994 -12.18224 -12.03180 -11.78576 -11.72116 -11.58058 -11.49936 -11.08044 -10.92781 -10.56088 -10.28187 -9.44831 -9.18026 -8.84287 -8.53208 -6.48986 0.02095 0.95502 1.24755 1.37991 1.46271 1.63831 1.69509 2.18758 2.30796 2.71210 2.88888 3.12039 3.19972 3.55864 3.67343 3.88376 3.99425 4.00166 4.11433 4.12624 4.24452 4.32509 4.33987 4.38716 4.50060 4.55743 4.60619 4.70034 4.74260 4.75642 4.80553 4.85419 4.87698 4.98179 5.00888 5.04261 5.12125 5.15679 5.21945 5.30396 5.40455 5.42586 5.48969 5.53771 5.71065 5.74242 5.83686 5.88952 6.02682 6.08530 6.26281 6.42880 6.47267 6.87143 7.07912 7.22336 8.05861 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.011993 B = 0.003923 C = 0.003179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2334.132153 B = 7136.044776 C = 8806.078555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.076 4.076 3 C -0.152 4.152 4 C 0.090 3.910 5 H 0.051 0.949 6 C 0.081 3.919 7 N -0.602 5.602 8 C 0.583 3.417 9 O -0.584 6.584 10 C -0.055 4.055 11 C -0.185 4.185 12 C -0.141 4.141 13 C -0.079 4.079 14 C -0.152 4.152 15 C -0.126 4.126 16 C -0.117 4.117 17 C 0.025 3.975 18 N -0.270 5.270 19 C -0.445 4.445 20 H 0.087 0.913 21 C -0.009 4.009 22 N -0.838 5.838 23 Si 1.124 2.876 24 H -0.259 1.259 25 H -0.274 1.274 26 H -0.265 1.265 27 C 0.048 3.952 28 C 0.052 3.948 29 N -0.666 5.666 30 H 0.036 0.964 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.091 0.909 34 H 0.048 0.952 35 H 0.076 0.924 36 H 0.041 0.959 37 H 0.070 0.930 38 H 0.090 0.910 39 H 0.176 0.824 40 H 0.150 0.850 41 H 0.153 0.847 42 H 0.136 0.864 43 H 0.095 0.905 44 H 0.269 0.731 45 H 0.101 0.899 46 H 0.101 0.899 47 H 0.048 0.952 48 H 0.121 0.879 49 H 0.354 0.646 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.404 -7.215 -13.146 16.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.095 4.095 3 C -0.210 4.210 4 C -0.021 4.021 5 H 0.070 0.930 6 C -0.043 4.043 7 N -0.335 5.335 8 C 0.374 3.626 9 O -0.464 6.464 10 C -0.171 4.171 11 C -0.212 4.212 12 C -0.146 4.146 13 C -0.097 4.097 14 C -0.171 4.171 15 C -0.146 4.146 16 C -0.137 4.137 17 C -0.089 4.089 18 N 0.068 4.932 19 C -0.573 4.573 20 H 0.104 0.896 21 C -0.218 4.218 22 N -0.465 5.465 23 Si 0.941 3.059 24 H -0.183 1.183 25 H -0.199 1.199 26 H -0.190 1.190 27 C -0.075 4.075 28 C -0.078 4.078 29 N -0.296 5.296 30 H 0.055 0.945 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.109 0.891 34 H 0.067 0.933 35 H 0.094 0.906 36 H 0.060 0.940 37 H 0.089 0.911 38 H 0.108 0.892 39 H 0.193 0.807 40 H 0.167 0.833 41 H 0.170 0.830 42 H 0.154 0.846 43 H 0.113 0.887 44 H 0.079 0.921 45 H 0.119 0.881 46 H 0.119 0.881 47 H 0.066 0.934 48 H 0.139 0.861 49 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -6.763 -5.281 -11.396 14.265 hybrid contribution 0.891 -0.203 -1.153 1.472 sum -5.872 -5.483 -12.549 14.901 Atomic orbital electron populations 1.21656 0.93587 1.02632 1.00995 1.21029 0.97157 0.95274 0.96047 1.21912 1.00762 0.96188 1.02154 1.21863 0.89938 0.90919 0.99380 0.93035 1.22564 0.97046 0.96434 0.88238 1.47801 1.41040 1.17101 1.27519 1.17435 0.78992 0.85666 0.80526 1.90694 1.63441 1.18993 1.73320 1.20179 1.10384 0.94394 0.92160 1.20949 1.09681 0.90802 0.99745 1.18411 1.07134 0.93690 0.95376 1.20568 0.98087 0.94359 0.96701 1.20838 1.02616 0.98994 0.94628 1.21037 1.01808 0.91184 1.00603 1.20373 1.01302 0.98388 0.93631 1.18865 1.05802 0.87069 0.97119 1.40269 1.36355 1.05453 1.11171 1.20906 1.56050 0.83238 0.97122 0.89562 1.28169 0.93610 1.06993 0.93010 1.70721 1.23621 1.12512 1.39647 0.82841 0.77257 0.70068 0.75714 1.18313 1.19858 1.18960 1.23409 0.96547 0.82079 1.05462 1.22465 0.91355 1.00966 0.93055 1.60622 1.62266 1.01657 1.05057 0.94474 0.91808 0.91257 0.89121 0.93320 0.90550 0.94006 0.91124 0.89161 0.80721 0.83279 0.82971 0.84583 0.88672 0.92093 0.88144 0.88096 0.93370 0.86103 0.82570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.18 9.04 71.98 0.65 -1.53 16 2 C -0.08 -1.34 2.65 -10.80 -0.03 -1.37 16 3 C -0.15 -2.97 8.85 71.98 0.64 -2.33 16 4 C 0.09 2.11 2.14 44.99 0.10 2.21 16 5 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 6 C 0.08 2.27 5.32 86.35 0.46 2.73 16 7 N -0.60 -20.55 3.00 -821.50 -2.47 -23.02 16 8 C 0.58 27.44 7.49 86.51 0.65 28.08 16 9 O -0.58 -32.13 14.71 -4.25 -0.06 -32.19 16 10 C -0.06 -2.74 6.30 39.91 0.25 -2.48 16 11 C -0.18 -7.58 8.39 22.63 0.19 -7.39 16 12 C -0.14 -6.18 6.16 -21.34 -0.13 -6.31 16 13 C -0.08 -2.73 10.06 22.31 0.22 -2.51 16 14 C -0.15 -5.03 9.97 22.03 0.22 -4.81 16 15 C -0.13 -4.90 10.02 22.32 0.22 -4.68 16 16 C -0.12 -5.72 8.41 22.38 0.19 -5.53 16 17 C 0.02 1.30 5.51 39.06 0.22 1.51 16 18 N -0.27 -15.20 2.66 -331.35 -0.88 -16.08 16 19 C -0.45 -26.57 9.13 84.09 0.77 -25.80 16 20 H 0.09 5.50 6.70 -2.91 -0.02 5.48 16 21 C -0.01 -0.48 4.20 84.95 0.36 -0.12 16 22 N -0.84 -48.17 11.66 21.67 0.25 -47.92 16 23 Si 1.12 48.87 29.98 68.60 2.06 50.93 16 24 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 25 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 26 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 27 C 0.05 1.22 5.13 86.50 0.44 1.66 16 28 C 0.05 1.13 6.72 86.54 0.58 1.71 16 29 N -0.67 -12.69 5.72 -489.91 -2.80 -15.50 16 30 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.07 1.13 7.61 -2.39 -0.02 1.11 16 33 H 0.09 1.27 8.14 -2.39 -0.02 1.26 16 34 H 0.05 1.04 6.59 -2.39 -0.02 1.03 16 35 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.07 2.41 5.71 -2.39 -0.01 2.40 16 38 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 39 H 0.18 5.44 6.11 -2.91 -0.02 5.42 16 40 H 0.15 3.87 8.06 -2.91 -0.02 3.85 16 41 H 0.15 3.67 8.06 -2.91 -0.02 3.64 16 42 H 0.14 4.43 8.06 -2.91 -0.02 4.40 16 43 H 0.10 5.06 6.32 -2.91 -0.02 5.04 16 44 H 0.27 16.28 6.97 -92.71 -0.65 15.64 16 45 H 0.10 1.88 8.12 -2.38 -0.02 1.86 16 46 H 0.10 3.01 4.38 -2.39 -0.01 3.00 16 47 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 48 H 0.12 1.88 8.14 -2.39 -0.02 1.86 16 49 H 0.35 5.03 8.78 -89.70 -0.79 4.24 16 Total: -1.00 -75.28 379.26 2.40 -72.88 By element: Atomic # 1 Polarization: 37.54 SS G_CDS: 0.31 Total: 37.85 kcal Atomic # 6 Polarization: -32.94 SS G_CDS: 5.99 Total: -26.95 kcal Atomic # 7 Polarization: -96.62 SS G_CDS: -5.90 Total: -102.51 kcal Atomic # 8 Polarization: -32.13 SS G_CDS: -0.06 Total: -32.19 kcal Atomic # 14 Polarization: 48.87 SS G_CDS: 2.06 Total: 50.93 kcal Total: -75.28 2.40 -72.88 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598572114.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.022 kcal (2) G-P(sol) polarization free energy of solvation -75.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds