Wall clock time and date at job start Wed Apr 1 2020 01:13:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47063 * 2 1 4 4 C 1.53003 * 109.47030 * 120.00336 * 2 1 3 5 5 H 1.08994 * 109.49273 * 59.94110 * 4 2 1 6 6 C 1.53237 * 109.48976 * 179.97438 * 4 2 1 7 7 N 1.47076 * 108.52030 * 173.81056 * 6 4 2 8 8 C 1.34781 * 120.87793 * 128.81435 * 7 6 4 9 9 O 1.21659 * 120.00244 * 352.84739 * 8 7 6 10 10 C 1.46891 * 119.99681 * 173.11859 * 8 7 6 11 11 C 1.36124 * 125.43821 * 333.87579 * 10 8 7 12 12 C 1.41702 * 107.74855 * 179.97438 * 11 10 8 13 13 C 1.40019 * 133.34966 * 180.02562 * 12 11 10 14 14 C 1.36574 * 119.83092 * 180.02562 * 13 12 11 15 15 C 1.38851 * 120.60057 * 359.93231 * 14 13 12 16 16 C 1.37845 * 120.63138 * 0.03743 * 15 14 13 17 17 C 1.39080 * 119.81662 * 359.97438 * 16 15 14 18 18 N 1.37834 * 133.16502 * 180.29609 * 17 16 15 19 19 C 1.36892 * 125.62145 * 359.95461 * 18 17 16 20 20 H 1.07994 * 119.99983 * 217.65791 * 19 18 17 21 21 C 1.39010 * 119.99690 * 37.65964 * 19 18 17 22 22 N 1.31353 * 120.00279 * 18.68023 * 21 19 18 23 23 Si 1.86803 * 119.99809 * 198.67438 * 21 19 18 24 24 H 1.48501 * 109.46887 * 90.00301 * 23 21 19 25 25 H 1.48502 * 109.47301 * 209.99956 * 23 21 19 26 26 H 1.48496 * 109.47194 * 330.00715 * 23 21 19 27 27 C 1.47079 * 118.24021 * 309.09337 * 7 6 4 28 28 C 1.52780 * 108.76962 * 50.84693 * 27 7 6 29 29 N 1.46899 * 109.42140 * 306.42879 * 28 27 7 30 30 H 1.09003 * 109.46736 * 299.99928 * 1 2 3 31 31 H 1.08999 * 109.47246 * 59.99845 * 1 2 3 32 32 H 1.09002 * 109.47165 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.46736 * 240.00072 * 2 1 3 34 34 H 1.08998 * 109.46998 * 180.02562 * 3 2 1 35 35 H 1.08999 * 109.47216 * 300.00173 * 3 2 1 36 36 H 1.08992 * 109.47240 * 59.99958 * 3 2 1 37 37 H 1.09000 * 109.63224 * 54.10590 * 6 4 2 38 38 H 1.09003 * 109.63158 * 293.52555 * 6 4 2 39 39 H 1.07997 * 126.12220 * 359.97438 * 11 10 8 40 40 H 1.08005 * 120.08726 * 359.95964 * 13 12 11 41 41 H 1.08009 * 119.69920 * 179.97438 * 14 13 12 42 42 H 1.08002 * 119.68329 * 180.02562 * 15 14 13 43 43 H 1.08007 * 120.08855 * 180.02562 * 16 15 14 44 44 H 0.97003 * 119.99675 * 184.41738 * 22 21 19 45 45 H 1.09001 * 109.62920 * 170.62226 * 27 7 6 46 46 H 1.09004 * 109.62710 * 291.19839 * 27 7 6 47 47 H 1.08996 * 109.56959 * 186.37293 * 28 27 7 48 48 H 1.09005 * 109.33796 * 66.33692 * 28 27 7 49 49 H 1.00900 * 111.00428 * 187.10800 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6760 -1.7487 1.2500 6 6 3.5724 -0.7222 1.2494 7 7 4.0391 -1.2853 2.5253 8 6 4.9458 -2.2822 2.5510 9 8 5.2920 -2.8164 1.5142 10 6 5.5115 -2.7277 3.8313 11 6 5.6236 -1.9644 4.9529 12 6 6.2174 -2.7633 5.9614 13 6 6.5713 -2.5221 7.2945 14 6 7.1436 -3.5161 8.0360 15 6 7.3775 -4.7670 7.4805 16 6 7.0372 -5.0285 6.1706 17 6 6.4534 -4.0321 5.3955 18 7 6.0088 -3.9908 4.0916 19 6 6.0560 -5.0283 3.1998 20 1 6.2802 -4.8374 2.1608 21 6 5.8153 -6.3275 3.6317 22 7 5.1958 -6.5367 4.7709 23 14 6.3729 -7.7757 2.5919 24 1 7.7511 -8.1654 2.9845 25 1 5.4541 -8.9224 2.8070 26 1 6.3569 -7.3908 1.1578 27 6 3.4856 -0.7360 3.7724 28 6 1.9611 -0.7306 3.6731 29 7 1.5537 -0.0275 2.4493 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6767 1.9563 0.8899 37 1 3.9391 0.2988 1.1439 38 1 3.9383 -1.3327 0.4239 39 1 5.3152 -0.9346 5.0555 40 1 6.3931 -1.5522 7.7350 41 1 7.4161 -3.3276 9.0640 42 1 7.8305 -5.5424 8.0805 43 1 7.2227 -6.0048 5.7475 44 1 5.0845 -7.4412 5.1034 45 1 3.7943 -1.3558 4.6142 46 1 3.8438 0.2837 3.9141 47 1 1.5405 -0.2232 4.5412 48 1 1.5978 -1.7579 3.6404 49 1 0.5523 0.0918 2.4171 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598572116.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:13:20 Heat of formation + Delta-G solvation = 19.894422 kcal Electronic energy + Delta-G solvation = -30710.954872 eV Core-core repulsion = 26830.738308 eV Total energy + Delta-G solvation = -3880.216563 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.34413 -40.91134 -39.16279 -37.48581 -36.57060 -35.46070 -34.10875 -32.57830 -31.33292 -30.68756 -29.66668 -28.36600 -27.40017 -26.83542 -25.06413 -24.22478 -23.01466 -22.41157 -21.58269 -20.49626 -20.12634 -19.46526 -17.99869 -17.62679 -17.20003 -16.76241 -16.60761 -16.56643 -16.37110 -16.14433 -15.48036 -15.30480 -15.11999 -14.83764 -14.63836 -14.53460 -14.31855 -14.20109 -13.82215 -13.72396 -13.61276 -13.31059 -13.10035 -12.95114 -12.80206 -12.63253 -12.50494 -12.36798 -12.22334 -12.16604 -11.96339 -11.74540 -11.66852 -11.46883 -11.45346 -10.97658 -10.89103 -10.33669 -9.90137 -9.35586 -9.00696 -8.63133 -8.31782 -6.41281 0.15859 1.09475 1.25978 1.32345 1.38993 1.42161 1.76813 2.10744 2.39215 2.82696 3.02028 3.13799 3.37917 3.63312 3.80276 3.83067 4.01770 4.15260 4.21295 4.25329 4.28780 4.42152 4.43993 4.52111 4.52710 4.60798 4.69621 4.72451 4.82571 4.83783 4.88046 4.91910 5.00998 5.03382 5.07184 5.10358 5.11396 5.20006 5.26118 5.35048 5.44460 5.46218 5.52603 5.60096 5.75421 5.91023 5.91477 5.97592 6.18747 6.26400 6.40373 6.47593 6.56519 6.94776 7.20191 7.45418 8.31983 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.012281 B = 0.003829 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2279.384343 B = 7311.226758 C = 8877.804351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.086 4.086 3 C -0.135 4.135 4 C 0.087 3.913 5 H 0.014 0.986 6 C 0.121 3.879 7 N -0.602 5.602 8 C 0.584 3.416 9 O -0.585 6.585 10 C -0.051 4.051 11 C -0.187 4.187 12 C -0.147 4.147 13 C -0.084 4.084 14 C -0.155 4.155 15 C -0.137 4.137 16 C -0.092 4.092 17 C 0.058 3.942 18 N -0.264 5.264 19 C -0.375 4.375 20 H 0.092 0.908 21 C 0.019 3.981 22 N -0.849 5.849 23 Si 0.988 3.012 24 H -0.257 1.257 25 H -0.264 1.264 26 H -0.270 1.270 27 C 0.089 3.911 28 C 0.047 3.953 29 N -0.666 5.666 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.044 0.956 33 H 0.068 0.932 34 H 0.047 0.953 35 H 0.061 0.939 36 H 0.070 0.930 37 H 0.094 0.906 38 H 0.065 0.935 39 H 0.174 0.826 40 H 0.146 0.854 41 H 0.148 0.852 42 H 0.133 0.867 43 H 0.090 0.910 44 H 0.284 0.716 45 H 0.103 0.897 46 H 0.098 0.902 47 H 0.120 0.880 48 H 0.010 0.990 49 H 0.355 0.645 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.052 13.539 0.135 15.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.105 4.105 3 C -0.193 4.193 4 C -0.024 4.024 5 H 0.032 0.968 6 C -0.001 4.001 7 N -0.334 5.334 8 C 0.375 3.625 9 O -0.466 6.466 10 C -0.167 4.167 11 C -0.214 4.214 12 C -0.151 4.151 13 C -0.102 4.102 14 C -0.174 4.174 15 C -0.157 4.157 16 C -0.112 4.112 17 C -0.056 4.056 18 N 0.074 4.926 19 C -0.503 4.503 20 H 0.109 0.891 21 C -0.191 4.191 22 N -0.479 5.479 23 Si 0.809 3.191 24 H -0.181 1.181 25 H -0.188 1.188 26 H -0.194 1.194 27 C -0.032 4.032 28 C -0.083 4.083 29 N -0.301 5.301 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.063 0.937 33 H 0.087 0.913 34 H 0.066 0.934 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.112 0.888 38 H 0.084 0.916 39 H 0.192 0.808 40 H 0.163 0.837 41 H 0.166 0.834 42 H 0.151 0.849 43 H 0.109 0.891 44 H 0.095 0.905 45 H 0.120 0.880 46 H 0.116 0.884 47 H 0.138 0.862 48 H 0.028 0.972 49 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -7.527 13.256 -0.569 15.254 hybrid contribution -0.332 -2.266 -0.852 2.444 sum -7.859 10.990 -1.421 13.585 Atomic orbital electron populations 1.21825 0.93696 1.01504 1.03186 1.21109 0.96951 0.97452 0.95009 1.21747 1.00536 0.94404 1.02568 1.21744 0.93462 0.94869 0.92365 0.96778 1.21898 0.94129 0.99125 0.84991 1.47828 1.40927 1.35482 1.09191 1.17451 0.78988 0.79056 0.87025 1.90680 1.63162 1.56876 1.35920 1.20154 1.10387 0.89820 0.96365 1.20960 1.09863 1.00360 0.90252 1.18433 1.07321 0.93268 0.96121 1.20505 0.98658 1.00092 0.90953 1.20767 1.02964 0.92916 1.00706 1.20991 1.02826 0.98534 0.93391 1.20191 1.00060 0.96490 0.94506 1.18706 1.03844 0.96880 0.86159 1.40106 1.36524 1.07446 1.08525 1.19986 1.51546 0.85943 0.92854 0.89053 1.26398 0.93106 1.01339 0.98218 1.70095 1.31897 1.24408 1.21460 0.85035 0.79267 0.76391 0.78442 1.18094 1.18792 1.19405 1.22572 0.93641 1.00719 0.86307 1.22259 0.94967 0.96399 0.94645 1.60406 1.19163 1.50261 1.00235 0.91190 0.91036 0.93701 0.91350 0.93380 0.92007 0.91074 0.88788 0.91610 0.80842 0.83663 0.83418 0.84924 0.89137 0.90545 0.87959 0.88367 0.86153 0.97179 0.82396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 8.88 71.98 0.64 -1.47 16 2 C -0.09 -1.59 2.80 -10.79 -0.03 -1.62 16 3 C -0.14 -2.17 8.70 71.98 0.63 -1.55 16 4 C 0.09 2.13 2.39 44.99 0.11 2.23 16 5 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 6 C 0.12 3.68 5.70 86.35 0.49 4.17 16 7 N -0.60 -21.73 3.02 -823.30 -2.48 -24.21 16 8 C 0.58 28.01 7.50 86.51 0.65 28.66 16 9 O -0.59 -32.39 14.73 -4.22 -0.06 -32.45 16 10 C -0.05 -2.58 6.31 39.91 0.25 -2.33 16 11 C -0.19 -7.92 8.39 22.63 0.19 -7.73 16 12 C -0.15 -6.61 6.16 -21.34 -0.13 -6.74 16 13 C -0.08 -3.02 10.06 22.31 0.22 -2.80 16 14 C -0.15 -5.31 9.97 22.03 0.22 -5.09 16 15 C -0.14 -5.42 10.02 22.32 0.22 -5.19 16 16 C -0.09 -4.55 8.54 22.38 0.19 -4.36 16 17 C 0.06 3.07 6.09 39.06 0.24 3.31 16 18 N -0.26 -15.02 2.84 -331.35 -0.94 -15.96 16 19 C -0.38 -22.32 9.14 84.09 0.77 -21.55 16 20 H 0.09 5.75 6.73 -2.91 -0.02 5.73 16 21 C 0.02 1.02 4.40 84.95 0.37 1.39 16 22 N -0.85 -47.09 10.88 21.67 0.24 -46.86 16 23 Si 0.99 43.05 29.59 68.60 2.03 45.08 16 24 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 25 H -0.26 -10.75 7.11 99.48 0.71 -10.05 16 26 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 27 C 0.09 2.50 5.10 86.20 0.44 2.94 16 28 C 0.05 1.09 6.68 86.23 0.58 1.67 16 29 N -0.67 -13.41 5.71 -491.54 -2.81 -16.22 16 30 H 0.07 0.86 6.50 -2.39 -0.02 0.85 16 31 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.05 0.85 6.31 -2.39 -0.02 0.84 16 35 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.07 1.11 7.60 -2.39 -0.02 1.10 16 37 H 0.09 2.49 6.15 -2.39 -0.01 2.47 16 38 H 0.07 2.34 7.04 -2.39 -0.02 2.32 16 39 H 0.17 5.67 6.04 -2.91 -0.02 5.66 16 40 H 0.15 4.01 8.06 -2.91 -0.02 3.99 16 41 H 0.15 3.76 8.06 -2.91 -0.02 3.74 16 42 H 0.13 4.37 8.06 -2.91 -0.02 4.34 16 43 H 0.09 4.73 6.39 -2.91 -0.02 4.71 16 44 H 0.28 14.50 8.31 -92.71 -0.77 13.73 16 45 H 0.10 3.26 4.31 -2.39 -0.01 3.25 16 46 H 0.10 2.25 8.12 -2.38 -0.02 2.23 16 47 H 0.12 2.00 8.14 -2.39 -0.02 1.98 16 48 H 0.01 0.28 8.14 -2.38 -0.02 0.26 16 49 H 0.35 5.67 6.74 -89.69 -0.60 5.07 16 Total: -1.00 -73.86 376.34 2.39 -71.47 By element: Atomic # 1 Polarization: 34.84 SS G_CDS: 0.37 Total: 35.22 kcal Atomic # 6 Polarization: -22.11 SS G_CDS: 6.05 Total: -16.06 kcal Atomic # 7 Polarization: -97.25 SS G_CDS: -6.00 Total: -103.25 kcal Atomic # 8 Polarization: -32.39 SS G_CDS: -0.06 Total: -32.45 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Total: -73.86 2.39 -71.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598572116.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.361 kcal (2) G-P(sol) polarization free energy of solvation -73.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.466 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds