Wall clock time and date at job start Wed Apr 1 2020 00:45:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.36860 * 125.01590 * 2 1 4 4 H 0.96997 * 125.00979 * 359.97438 * 3 2 1 5 5 C 1.37393 * 109.97981 * 179.97438 * 3 2 1 6 6 C 1.39365 * 133.25042 * 179.97438 * 5 3 2 7 7 C 1.36323 * 120.24290 * 179.76697 * 6 5 3 8 8 C 1.40209 * 120.65985 * 0.52365 * 7 6 5 9 9 C 1.47658 * 119.96960 * 179.75657 * 8 7 6 10 10 O 1.21575 * 119.99926 * 207.32812 * 9 8 7 11 11 N 1.34783 * 119.99844 * 27.31986 * 9 8 7 12 12 C 1.47078 * 120.88302 * 6.04995 * 11 9 8 13 13 C 1.53236 * 108.52161 * 128.83105 * 12 11 9 14 14 N 1.46902 * 109.33948 * 53.83066 * 13 12 11 15 15 C 1.46904 * 111.00143 * 172.74536 * 14 13 12 16 16 C 1.50693 * 109.47188 * 64.92574 * 15 14 13 17 17 H 1.08006 * 119.99844 * 354.90852 * 16 15 14 18 18 C 1.37878 * 120.00132 * 174.91083 * 16 15 14 19 19 N 1.31509 * 119.99916 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00025 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47469 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47218 * 119.99984 * 20 18 16 23 23 H 1.48503 * 109.47065 * 239.99855 * 20 18 16 24 24 C 1.46901 * 111.26708 * 296.89318 * 14 13 12 25 25 C 1.47076 * 120.87919 * 186.06402 * 11 9 8 26 26 C 1.39146 * 120.05858 * 359.47497 * 8 7 6 27 27 C 1.39273 * 119.39212 * 0.25918 * 26 8 7 28 28 C 1.34184 * 125.02094 * 179.97438 * 2 1 3 29 29 C 1.50703 * 126.54283 * 0.02562 * 28 2 1 30 30 H 1.09005 * 109.47250 * 270.03281 * 1 2 3 31 31 H 1.08992 * 109.47499 * 30.03872 * 1 2 3 32 32 H 1.09005 * 109.46928 * 150.03778 * 1 2 3 33 33 H 1.08006 * 119.88046 * 0.02562 * 6 5 3 34 34 H 1.08001 * 119.66879 * 180.25671 * 7 6 5 35 35 H 1.09006 * 109.62810 * 9.12028 * 12 11 9 36 36 H 1.08996 * 109.62474 * 248.54295 * 12 11 9 37 37 H 1.08996 * 109.49014 * 173.78533 * 13 12 11 38 38 H 1.08995 * 109.49362 * 293.86734 * 13 12 11 39 39 H 1.08998 * 109.46812 * 184.92802 * 15 14 13 40 40 H 1.09003 * 109.46731 * 304.92463 * 15 14 13 41 41 H 0.96998 * 120.00247 * 180.02562 * 19 18 16 42 42 H 1.08999 * 109.48953 * 183.06331 * 24 14 13 43 43 H 1.08992 * 109.49288 * 303.14551 * 24 14 13 44 44 H 1.09001 * 109.62863 * 111.45376 * 25 11 9 45 45 H 1.09001 * 109.78920 * 350.97299 * 25 11 9 46 46 H 1.08002 * 120.30687 * 180.27711 * 26 8 7 47 47 H 1.09004 * 109.46879 * 270.03873 * 29 28 2 48 48 H 1.08991 * 109.47397 * 30.04018 * 29 28 2 49 49 H 1.09002 * 109.46922 * 150.04253 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2923 1.1209 0.0000 4 1 1.9610 2.0325 -0.0004 5 6 3.6192 0.7644 0.0006 6 6 4.8048 1.4970 0.0004 7 6 6.0079 0.8561 0.0059 8 6 6.0720 -0.5445 0.0008 9 6 7.3835 -1.2229 0.0015 10 8 7.4948 -2.3312 -0.4857 11 7 8.4572 -0.6134 0.5421 12 6 8.3202 0.6670 1.2529 13 6 8.9990 0.5394 2.6208 14 7 10.3807 0.0758 2.4368 15 6 11.1191 0.1047 3.7065 16 6 10.5086 -0.8847 4.6652 17 1 9.6086 -1.4159 4.3927 18 6 11.0989 -1.1118 5.8904 19 7 12.1945 -0.4645 6.2225 20 14 10.3425 -2.3387 7.0786 21 1 9.1222 -2.9282 6.4713 22 1 11.3223 -3.4166 7.3675 23 1 9.9813 -1.6464 8.3417 24 6 10.4177 -1.2645 1.8367 25 6 9.7970 -1.2109 0.4367 26 6 4.9007 -1.2957 0.0011 27 6 3.6703 -0.6434 0.0009 28 6 2.2771 -1.0989 0.0005 29 6 1.8005 -2.5286 0.0006 30 1 -0.3634 0.0006 1.0277 31 1 -0.3634 0.8896 -0.5144 32 1 -0.3633 -0.8904 -0.5133 33 1 4.7702 2.5765 0.0000 34 1 6.9209 1.4331 0.0099 35 1 7.2638 0.8993 1.3885 36 1 8.8011 1.4582 0.6778 37 1 9.0040 1.5103 3.1162 38 1 8.4527 -0.1786 3.2323 39 1 12.1613 -0.1592 3.5267 40 1 11.0664 1.1057 4.1347 41 1 12.6100 -0.6245 7.0843 42 1 11.4516 -1.6018 1.7635 43 1 9.8517 -1.9574 2.4592 44 1 10.4198 -0.6002 -0.2169 45 1 9.7203 -2.2198 0.0313 46 1 4.9454 -2.3748 0.0017 47 1 1.6845 -2.8728 1.0283 48 1 0.8419 -2.5921 -0.5142 49 1 2.5305 -3.1549 -0.5122 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602210504.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:45:33 Heat of formation + Delta-G solvation = 41.955316 kcal Electronic energy + Delta-G solvation = -29533.578822 eV Core-core repulsion = 25654.318891 eV Total energy + Delta-G solvation = -3879.259931 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.65903 -40.02109 -37.58296 -36.83468 -34.45006 -33.48515 -32.37235 -31.62265 -30.59438 -30.25996 -28.50683 -27.75493 -26.16470 -25.45199 -23.55966 -23.16473 -22.08490 -21.55162 -20.50068 -19.51792 -18.68127 -17.84050 -17.33815 -16.39408 -16.04090 -15.43131 -15.31637 -14.98471 -14.81016 -14.61774 -14.38115 -14.16144 -13.97196 -13.64296 -13.47546 -13.34688 -13.23454 -13.05966 -12.95884 -12.79053 -12.65018 -12.43547 -11.97342 -11.84502 -11.79248 -11.45328 -11.15605 -11.05681 -10.94822 -10.85331 -10.60003 -10.55205 -10.20088 -9.92132 -9.71416 -9.68302 -9.48251 -8.46129 -8.43041 -8.22023 -7.78586 -7.24068 -6.05656 -4.14763 0.90152 1.12437 2.38227 2.79670 2.99091 3.24594 3.25508 3.33962 3.38605 3.86472 4.33118 4.39367 4.52715 4.66034 4.74231 4.82644 4.94121 4.95085 5.06090 5.08248 5.24827 5.26358 5.34653 5.43195 5.50987 5.53331 5.55784 5.57027 5.60273 5.71590 5.76822 5.84829 5.93391 5.96403 6.05309 6.14798 6.22470 6.34045 6.43652 6.46809 6.58628 6.63032 6.77716 6.83450 6.91821 7.21519 7.25693 7.49020 7.67055 7.86851 7.98398 8.20638 8.25330 8.41336 8.95496 9.52714 10.99434 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.013352 B = 0.002677 C = 0.002510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2096.505513 B =10455.908327 C =11151.265207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.067 3.933 3 N -0.590 5.590 4 H 0.414 0.586 5 C 0.118 3.882 6 C -0.139 4.139 7 C -0.078 4.078 8 C -0.157 4.157 9 C 0.562 3.438 10 O -0.550 6.550 11 N -0.600 5.600 12 C 0.090 3.910 13 C 0.047 3.953 14 N -0.541 5.541 15 C 0.187 3.813 16 C -0.550 4.550 17 H 0.056 0.944 18 C 0.066 3.934 19 N -0.890 5.890 20 Si 0.888 3.112 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.283 1.283 24 C 0.051 3.949 25 C 0.115 3.885 26 C -0.004 4.004 27 C -0.115 4.115 28 C -0.160 4.160 29 C -0.080 4.080 30 H 0.077 0.923 31 H 0.066 0.934 32 H 0.084 0.916 33 H 0.125 0.875 34 H 0.148 0.852 35 H 0.100 0.900 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.042 0.958 39 H 0.036 0.964 40 H 0.029 0.971 41 H 0.262 0.738 42 H 0.078 0.922 43 H 0.044 0.956 44 H 0.069 0.931 45 H 0.088 0.912 46 H 0.132 0.868 47 H 0.065 0.935 48 H 0.062 0.938 49 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.982 4.963 -14.348 26.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.040 4.040 3 N -0.193 5.193 4 H 0.251 0.749 5 C 0.010 3.990 6 C -0.160 4.160 7 C -0.097 4.097 8 C -0.161 4.161 9 C 0.352 3.648 10 O -0.429 6.429 11 N -0.333 5.333 12 C -0.033 4.033 13 C -0.082 4.082 14 N -0.265 5.265 15 C 0.062 3.938 16 C -0.589 4.589 17 H 0.075 0.925 18 C -0.137 4.137 19 N -0.529 5.529 20 Si 0.716 3.284 21 H -0.198 1.198 22 H -0.209 1.209 23 H -0.209 1.209 24 C -0.078 4.078 25 C -0.007 4.007 26 C -0.024 4.024 27 C -0.120 4.120 28 C -0.167 4.167 29 C -0.137 4.137 30 H 0.095 0.905 31 H 0.085 0.915 32 H 0.103 0.897 33 H 0.143 0.857 34 H 0.165 0.835 35 H 0.117 0.883 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.060 0.940 39 H 0.054 0.946 40 H 0.047 0.953 41 H 0.072 0.928 42 H 0.097 0.903 43 H 0.062 0.938 44 H 0.087 0.913 45 H 0.106 0.894 46 H 0.150 0.850 47 H 0.083 0.917 48 H 0.081 0.919 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -21.613 4.826 -14.781 26.625 hybrid contribution -0.738 -0.583 1.575 1.835 sum -22.351 4.243 -13.205 26.305 Atomic orbital electron populations 1.20454 0.87718 1.03586 1.03121 1.20043 0.93246 0.85419 1.05263 1.41610 1.04017 1.08177 1.65485 0.74898 1.18346 0.84561 0.94066 1.02053 1.19675 0.89313 0.99244 1.07725 1.21198 0.97964 0.93470 0.97055 1.19586 0.93145 0.93659 1.09736 1.18208 0.83684 0.84952 0.77996 1.90735 1.85204 1.19374 1.47619 1.48010 1.07675 1.23289 1.54292 1.22711 1.01688 0.85015 0.93856 1.22278 0.90864 1.01053 0.94047 1.62511 1.12102 1.23150 1.28724 1.19770 0.93906 0.96723 0.83424 1.21778 1.11130 1.24496 1.01475 0.92545 1.24950 0.94760 0.95931 0.98074 1.69945 1.19130 1.41711 1.22093 0.86605 0.79390 0.81342 0.81113 1.19844 1.20875 1.20925 1.22229 1.00696 0.91970 0.92928 1.21848 0.81364 0.99182 0.98303 1.20579 0.88986 0.99928 0.92883 1.18971 0.92996 0.91921 1.08078 1.20066 0.90330 0.94929 1.11373 1.20151 1.00732 0.90931 1.01879 0.90472 0.91466 0.89690 0.85679 0.83500 0.88277 0.90859 0.90397 0.93954 0.94564 0.95336 0.92836 0.90326 0.93777 0.91323 0.89414 0.84978 0.91658 0.91883 0.91555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.44 10.18 36.01 0.37 -0.08 16 2 C 0.07 0.57 7.08 -81.78 -0.58 0.00 16 3 N -0.59 -4.98 6.05 -6.92 -0.04 -5.02 16 4 H 0.41 2.18 8.96 -40.82 -0.37 1.82 16 5 C 0.12 1.32 7.27 -83.96 -0.61 0.71 16 6 C -0.14 -1.43 10.00 -39.85 -0.40 -1.83 16 7 C -0.08 -0.92 7.36 -39.53 -0.29 -1.21 16 8 C -0.16 -2.29 5.51 -104.97 -0.58 -2.87 16 9 C 0.56 9.67 7.47 -12.41 -0.09 9.58 16 10 O -0.55 -11.04 16.11 5.30 0.09 -10.95 16 11 N -0.60 -9.89 3.01 -173.65 -0.52 -10.42 16 12 C 0.09 1.31 4.80 -3.60 -0.02 1.29 16 13 C 0.05 0.87 5.24 -3.70 -0.02 0.85 16 14 N -0.54 -11.23 4.83 -235.77 -1.14 -12.37 16 15 C 0.19 4.71 5.11 -4.98 -0.03 4.68 16 16 C -0.55 -15.00 7.75 -34.44 -0.27 -15.27 16 17 H 0.06 1.56 5.88 -52.48 -0.31 1.26 16 18 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 19 N -0.89 -25.98 13.29 55.43 0.74 -25.24 16 20 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 21 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 24 C 0.05 1.01 5.15 -3.70 -0.02 0.99 16 25 C 0.12 1.95 6.61 -3.61 -0.02 1.93 16 26 C 0.00 -0.06 9.64 -38.86 -0.37 -0.44 16 27 C -0.12 -1.47 6.34 -105.15 -0.67 -2.14 16 28 C -0.16 -1.70 6.32 -102.69 -0.65 -2.35 16 29 C -0.08 -0.67 10.17 36.01 0.37 -0.30 16 30 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.08 0.34 7.04 -51.93 -0.37 -0.02 16 33 H 0.13 0.94 8.06 -52.48 -0.42 0.51 16 34 H 0.15 1.52 5.11 -52.49 -0.27 1.25 16 35 H 0.10 1.27 4.21 -51.93 -0.22 1.05 16 36 H 0.07 0.95 7.92 -51.93 -0.41 0.54 16 37 H 0.08 1.38 8.05 -51.93 -0.42 0.96 16 38 H 0.04 0.89 6.92 -51.93 -0.36 0.53 16 39 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.03 0.76 8.07 -51.93 -0.42 0.34 16 41 H 0.26 7.23 8.31 -40.82 -0.34 6.90 16 42 H 0.08 1.54 8.11 -51.93 -0.42 1.12 16 43 H 0.04 0.98 6.79 -51.93 -0.35 0.63 16 44 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 45 H 0.09 1.51 7.05 -51.93 -0.37 1.14 16 46 H 0.13 1.89 7.88 -52.49 -0.41 1.48 16 47 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.06 0.40 7.06 -51.93 -0.37 0.03 16 49 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 385.87 15.07 5.82 5.82 Total: -1.00 -33.52 385.87 -11.21 -44.73 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -7.15 Total: 1.60 kcal Atomic # 6 Polarization: -0.74 SS G_CDS: -3.98 Total: -4.72 kcal Atomic # 7 Polarization: -52.08 SS G_CDS: -0.97 Total: -53.05 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: 0.09 Total: -10.95 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.52 -11.21 -44.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602210504.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.684 kcal (2) G-P(sol) polarization free energy of solvation -33.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds