Wall clock time and date at job start Wed Apr 1 2020 00:45:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.36860 * 125.01590 * 2 1 4 4 H 0.96997 * 125.00979 * 359.97438 * 3 2 1 5 5 C 1.37393 * 109.97981 * 179.97438 * 3 2 1 6 6 C 1.39365 * 133.25042 * 179.97438 * 5 3 2 7 7 C 1.36323 * 120.24290 * 179.76697 * 6 5 3 8 8 C 1.40209 * 120.65985 * 0.52365 * 7 6 5 9 9 C 1.47658 * 119.96960 * 179.75657 * 8 7 6 10 10 O 1.21575 * 119.99926 * 207.32812 * 9 8 7 11 11 N 1.34783 * 119.99844 * 27.31986 * 9 8 7 12 12 C 1.47078 * 120.88302 * 6.04995 * 11 9 8 13 13 C 1.53236 * 108.52161 * 128.83105 * 12 11 9 14 14 N 1.46902 * 109.33948 * 53.83066 * 13 12 11 15 15 C 1.46904 * 111.00143 * 172.74536 * 14 13 12 16 16 C 1.50693 * 109.47188 * 64.92574 * 15 14 13 17 17 H 1.08006 * 119.99844 * 354.90852 * 16 15 14 18 18 C 1.37878 * 120.00132 * 174.91083 * 16 15 14 19 19 N 1.31509 * 119.99916 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00025 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47469 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47218 * 119.99984 * 20 18 16 23 23 H 1.48503 * 109.47065 * 239.99855 * 20 18 16 24 24 C 1.46901 * 111.26708 * 296.89318 * 14 13 12 25 25 C 1.47076 * 120.87919 * 186.06402 * 11 9 8 26 26 C 1.39146 * 120.05858 * 359.47497 * 8 7 6 27 27 C 1.39273 * 119.39212 * 0.25918 * 26 8 7 28 28 C 1.34184 * 125.02094 * 179.97438 * 2 1 3 29 29 C 1.50703 * 126.54283 * 0.02562 * 28 2 1 30 30 H 1.09005 * 109.47250 * 270.03281 * 1 2 3 31 31 H 1.08992 * 109.47499 * 30.03872 * 1 2 3 32 32 H 1.09005 * 109.46928 * 150.03778 * 1 2 3 33 33 H 1.08006 * 119.88046 * 0.02562 * 6 5 3 34 34 H 1.08001 * 119.66879 * 180.25671 * 7 6 5 35 35 H 1.09006 * 109.62810 * 9.12028 * 12 11 9 36 36 H 1.08996 * 109.62474 * 248.54295 * 12 11 9 37 37 H 1.08996 * 109.49014 * 173.78533 * 13 12 11 38 38 H 1.08995 * 109.49362 * 293.86734 * 13 12 11 39 39 H 1.08998 * 109.46812 * 184.92802 * 15 14 13 40 40 H 1.09003 * 109.46731 * 304.92463 * 15 14 13 41 41 H 0.96998 * 120.00247 * 180.02562 * 19 18 16 42 42 H 1.08999 * 109.48953 * 183.06331 * 24 14 13 43 43 H 1.08992 * 109.49288 * 303.14551 * 24 14 13 44 44 H 1.09001 * 109.62863 * 111.45376 * 25 11 9 45 45 H 1.09001 * 109.78920 * 350.97299 * 25 11 9 46 46 H 1.08002 * 120.30687 * 180.27711 * 26 8 7 47 47 H 1.09004 * 109.46879 * 270.03873 * 29 28 2 48 48 H 1.08991 * 109.47397 * 30.04018 * 29 28 2 49 49 H 1.09002 * 109.46922 * 150.04253 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2923 1.1209 0.0000 4 1 1.9610 2.0325 -0.0004 5 6 3.6192 0.7644 0.0006 6 6 4.8048 1.4970 0.0004 7 6 6.0079 0.8561 0.0059 8 6 6.0720 -0.5445 0.0008 9 6 7.3835 -1.2229 0.0015 10 8 7.4948 -2.3312 -0.4857 11 7 8.4572 -0.6134 0.5421 12 6 8.3202 0.6670 1.2529 13 6 8.9990 0.5394 2.6208 14 7 10.3807 0.0758 2.4368 15 6 11.1191 0.1047 3.7065 16 6 10.5086 -0.8847 4.6652 17 1 9.6086 -1.4159 4.3927 18 6 11.0989 -1.1118 5.8904 19 7 12.1945 -0.4645 6.2225 20 14 10.3425 -2.3387 7.0786 21 1 9.1222 -2.9282 6.4713 22 1 11.3223 -3.4166 7.3675 23 1 9.9813 -1.6464 8.3417 24 6 10.4177 -1.2645 1.8367 25 6 9.7970 -1.2109 0.4367 26 6 4.9007 -1.2957 0.0011 27 6 3.6703 -0.6434 0.0009 28 6 2.2771 -1.0989 0.0005 29 6 1.8005 -2.5286 0.0006 30 1 -0.3634 0.0006 1.0277 31 1 -0.3634 0.8896 -0.5144 32 1 -0.3633 -0.8904 -0.5133 33 1 4.7702 2.5765 0.0000 34 1 6.9209 1.4331 0.0099 35 1 7.2638 0.8993 1.3885 36 1 8.8011 1.4582 0.6778 37 1 9.0040 1.5103 3.1162 38 1 8.4527 -0.1786 3.2323 39 1 12.1613 -0.1592 3.5267 40 1 11.0664 1.1057 4.1347 41 1 12.6100 -0.6245 7.0843 42 1 11.4516 -1.6018 1.7635 43 1 9.8517 -1.9574 2.4592 44 1 10.4198 -0.6002 -0.2169 45 1 9.7203 -2.2198 0.0313 46 1 4.9454 -2.3748 0.0017 47 1 1.6845 -2.8728 1.0283 48 1 0.8419 -2.5921 -0.5142 49 1 2.5305 -3.1549 -0.5122 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602210504.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:45:32 Heat of formation + Delta-G solvation = 20.346251 kcal Electronic energy + Delta-G solvation = -29534.515861 eV Core-core repulsion = 25654.318891 eV Total energy + Delta-G solvation = -3880.196970 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.47723 -41.29892 -39.08624 -37.86374 -36.07996 -34.35795 -34.22121 -32.69251 -31.64806 -31.22003 -29.95326 -28.80989 -27.24152 -26.92179 -24.89093 -24.60608 -23.54592 -22.49013 -21.89603 -20.59724 -19.79639 -18.69923 -18.60858 -18.23387 -17.36458 -16.76536 -16.45193 -16.35611 -15.99754 -15.90392 -15.72625 -15.53452 -15.07128 -15.03115 -14.78243 -14.35537 -14.10846 -14.03972 -13.77980 -13.72153 -13.63954 -13.58974 -13.36913 -12.98196 -12.94706 -12.81026 -12.62301 -12.59390 -12.44179 -12.35627 -12.11500 -11.92644 -11.83238 -11.76701 -11.55153 -10.90503 -10.63846 -10.53072 -9.79995 -9.17141 -9.05948 -8.56415 -8.19576 -6.38098 -0.06195 0.22928 1.30919 1.33483 1.44343 1.64339 1.75584 1.97964 2.13312 2.33455 2.85215 3.05513 3.31333 3.45604 3.66875 3.78182 3.92740 4.08901 4.10929 4.21602 4.25108 4.30036 4.34999 4.42837 4.45601 4.50322 4.62062 4.73505 4.74695 4.77367 4.79779 4.84927 4.89097 4.93628 5.03855 5.07959 5.11413 5.15931 5.20308 5.20760 5.30849 5.36189 5.37990 5.50022 5.65105 5.71368 5.81348 5.98681 6.08258 6.16065 6.40680 6.44076 6.66932 6.82124 7.08565 7.33181 8.82866 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.013352 B = 0.002677 C = 0.002510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2096.505513 B =10455.908327 C =11151.265207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.084 3.916 3 N -0.576 5.576 4 H 0.432 0.568 5 C 0.110 3.890 6 C -0.123 4.123 7 C -0.085 4.085 8 C -0.175 4.175 9 C 0.558 3.442 10 O -0.590 6.590 11 N -0.604 5.604 12 C 0.100 3.900 13 C 0.046 3.954 14 N -0.533 5.533 15 C 0.200 3.800 16 C -0.556 4.556 17 H 0.046 0.954 18 C 0.017 3.983 19 N -0.921 5.921 20 Si 0.951 3.049 21 H -0.277 1.277 22 H -0.277 1.277 23 H -0.273 1.273 24 C 0.057 3.943 25 C 0.125 3.875 26 C -0.025 4.025 27 C -0.138 4.138 28 C -0.197 4.197 29 C -0.078 4.078 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.095 0.905 33 H 0.163 0.837 34 H 0.166 0.834 35 H 0.124 0.876 36 H 0.104 0.896 37 H 0.088 0.912 38 H 0.011 0.989 39 H 0.011 0.989 40 H 0.014 0.986 41 H 0.266 0.734 42 H 0.076 0.924 43 H 0.011 0.989 44 H 0.092 0.908 45 H 0.082 0.918 46 H 0.113 0.887 47 H 0.064 0.936 48 H 0.086 0.914 49 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.910 7.152 -14.956 29.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.024 4.024 3 N -0.181 5.181 4 H 0.272 0.728 5 C 0.001 3.999 6 C -0.143 4.143 7 C -0.105 4.105 8 C -0.179 4.179 9 C 0.350 3.650 10 O -0.472 6.472 11 N -0.335 5.335 12 C -0.022 4.022 13 C -0.083 4.083 14 N -0.256 5.256 15 C 0.074 3.926 16 C -0.595 4.595 17 H 0.064 0.936 18 C -0.183 4.183 19 N -0.560 5.560 20 Si 0.777 3.223 21 H -0.201 1.201 22 H -0.202 1.202 23 H -0.198 1.198 24 C -0.073 4.073 25 C 0.002 3.998 26 C -0.044 4.044 27 C -0.143 4.143 28 C -0.203 4.203 29 C -0.135 4.135 30 H 0.107 0.893 31 H 0.106 0.894 32 H 0.113 0.887 33 H 0.181 0.819 34 H 0.183 0.817 35 H 0.141 0.859 36 H 0.122 0.878 37 H 0.106 0.894 38 H 0.029 0.971 39 H 0.029 0.971 40 H 0.032 0.968 41 H 0.075 0.925 42 H 0.094 0.906 43 H 0.029 0.971 44 H 0.111 0.889 45 H 0.100 0.900 46 H 0.131 0.869 47 H 0.083 0.917 48 H 0.105 0.895 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -24.564 7.055 -15.391 29.833 hybrid contribution 0.050 -1.238 1.741 2.137 sum -24.514 5.817 -13.650 28.655 Atomic orbital electron populations 1.20614 0.84678 1.05168 1.04313 1.20620 0.94928 0.84658 1.02174 1.41667 1.03000 1.09258 1.64137 0.72761 1.18548 0.86012 0.93508 1.01877 1.20035 0.88211 1.00974 1.05114 1.21310 0.99473 0.92026 0.97653 1.19483 0.91472 0.95072 1.11914 1.18700 0.84622 0.84497 0.77188 1.90699 1.85863 1.21196 1.49474 1.48108 1.07283 1.23863 1.54229 1.22847 1.03000 0.84791 0.91524 1.22382 0.89103 1.00403 0.96416 1.62465 1.13425 1.23511 1.26214 1.19448 0.93079 0.95164 0.84952 1.21956 1.10763 1.24705 1.02123 0.93581 1.25708 0.95212 0.97660 0.99751 1.70037 1.20209 1.43017 1.22787 0.85619 0.78396 0.79203 0.79125 1.20149 1.20242 1.19839 1.22183 1.00339 0.90649 0.94105 1.21702 0.82021 0.99717 0.96339 1.20523 0.90101 0.99238 0.94576 1.19269 0.93378 0.93287 1.08320 1.20400 0.89795 0.96536 1.13561 1.20156 1.01430 0.89881 1.01999 0.89298 0.89378 0.88666 0.81911 0.81736 0.85899 0.87802 0.89389 0.97082 0.97057 0.96828 0.92483 0.90598 0.97101 0.88947 0.89993 0.86935 0.91721 0.89496 0.92987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.53 10.18 71.24 0.72 0.19 16 2 C 0.08 1.21 7.08 40.85 0.29 1.50 16 3 N -0.58 -7.81 6.05 -175.80 -1.06 -8.87 16 4 H 0.43 2.71 8.96 -92.71 -0.83 1.88 16 5 C 0.11 2.20 7.27 39.19 0.28 2.49 16 6 C -0.12 -2.14 10.00 22.09 0.22 -1.92 16 7 C -0.09 -1.84 7.36 22.30 0.16 -1.67 16 8 C -0.18 -5.14 5.51 -20.09 -0.11 -5.25 16 9 C 0.56 19.68 7.47 86.73 0.65 20.32 16 10 O -0.59 -24.89 16.11 -3.95 -0.06 -24.96 16 11 N -0.60 -19.76 3.01 -821.57 -2.47 -22.23 16 12 C 0.10 2.74 4.80 86.35 0.41 3.15 16 13 C 0.05 1.69 5.24 86.38 0.45 2.14 16 14 N -0.53 -22.41 4.83 -899.85 -4.35 -26.76 16 15 C 0.20 10.37 5.11 85.55 0.44 10.81 16 16 C -0.56 -31.24 7.75 25.60 0.20 -31.04 16 17 H 0.05 2.65 5.88 -2.91 -0.02 2.63 16 18 C 0.02 0.94 5.46 84.66 0.46 1.40 16 19 N -0.92 -54.54 13.29 21.45 0.28 -54.25 16 20 Si 0.95 44.98 29.54 68.60 2.03 47.00 16 21 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 22 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 23 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 24 C 0.06 2.31 5.15 86.38 0.45 2.75 16 25 C 0.12 4.24 6.61 86.35 0.57 4.81 16 26 C -0.02 -0.74 9.64 22.74 0.22 -0.52 16 27 C -0.14 -3.48 6.34 -20.21 -0.13 -3.61 16 28 C -0.20 -3.99 6.32 -18.61 -0.12 -4.10 16 29 C -0.08 -1.28 10.17 71.24 0.72 -0.55 16 30 H 0.09 0.40 8.14 -2.38 -0.02 0.38 16 31 H 0.09 0.20 8.14 -2.39 -0.02 0.18 16 32 H 0.09 0.42 7.04 -2.38 -0.02 0.40 16 33 H 0.16 1.59 8.06 -2.91 -0.02 1.57 16 34 H 0.17 2.85 5.11 -2.91 -0.01 2.84 16 35 H 0.12 2.87 4.21 -2.38 -0.01 2.86 16 36 H 0.10 2.31 7.92 -2.39 -0.02 2.29 16 37 H 0.09 3.04 8.05 -2.39 -0.02 3.02 16 38 H 0.01 0.47 6.92 -2.39 -0.02 0.45 16 39 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 40 H 0.01 0.74 8.07 -2.39 -0.02 0.72 16 41 H 0.27 14.81 8.31 -92.71 -0.77 14.04 16 42 H 0.08 3.08 8.11 -2.39 -0.02 3.06 16 43 H 0.01 0.50 6.79 -2.39 -0.02 0.49 16 44 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 45 H 0.08 2.91 7.05 -2.39 -0.02 2.89 16 46 H 0.11 3.60 7.88 -2.91 -0.02 3.58 16 47 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 48 H 0.09 0.95 7.06 -2.39 -0.02 0.93 16 49 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -76.23 385.87 0.42 -75.81 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: 0.15 Total: 13.34 kcal Atomic # 6 Polarization: -4.98 SS G_CDS: 5.90 Total: 0.92 kcal Atomic # 7 Polarization: -104.51 SS G_CDS: -7.60 Total: -112.11 kcal Atomic # 8 Polarization: -24.89 SS G_CDS: -0.06 Total: -24.96 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.00 kcal Total: -76.23 0.42 -75.81 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602210504.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.153 kcal (2) G-P(sol) polarization free energy of solvation -76.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.807 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds