Wall clock time and date at job start Wed Apr 1 2020 00:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52993 * 110.80602 * 2 1 4 4 C 1.54608 * 110.73782 * 123.30021 * 2 1 3 5 5 N 1.47914 * 102.62776 * 143.93182 * 4 2 1 6 6 C 1.46893 * 111.00080 * 94.67667 * 5 4 2 7 7 C 1.50706 * 109.47247 * 76.33374 * 6 5 4 8 8 O 1.21280 * 119.99789 * 6.11148 * 7 6 5 9 9 N 1.34777 * 120.00247 * 186.11263 * 7 6 5 10 10 C 1.46498 * 119.99730 * 180.02562 * 9 7 6 11 11 C 1.50701 * 109.47137 * 90.00025 * 10 9 7 12 12 H 1.08001 * 119.99673 * 359.97438 * 11 10 9 13 13 C 1.37878 * 119.99948 * 179.97438 * 11 10 9 14 14 N 1.31517 * 119.99824 * 180.02562 * 13 11 10 15 15 Si 1.86793 * 119.99890 * 0.02562 * 13 11 10 16 16 H 1.48501 * 109.47413 * 90.00041 * 15 13 11 17 17 H 1.48502 * 109.47112 * 209.99782 * 15 13 11 18 18 H 1.48499 * 109.47547 * 329.99688 * 15 13 11 19 19 C 1.46496 * 119.99592 * 359.97438 * 9 7 6 20 20 C 1.53008 * 109.46990 * 90.00491 * 19 9 7 21 21 C 1.47203 * 109.47132 * 179.97438 * 20 19 9 22 22 N 6.90238 * 144.34427 * 8.73469 * 2 1 3 23 23 C 1.40041 * 107.90984 * 332.83910 * 5 4 2 24 24 C 1.39397 * 129.94344 * 198.05428 * 23 5 4 25 25 C 1.37915 * 120.19946 * 180.36616 * 24 23 5 26 26 C 1.38306 * 120.26248 * 359.94047 * 25 24 23 27 27 C 1.38306 * 119.88465 * 359.89793 * 26 25 24 28 28 C 1.37921 * 120.07784 * 0.02562 * 27 26 25 29 29 H 1.08996 * 109.47601 * 296.70408 * 1 2 3 30 30 H 1.09001 * 109.47243 * 56.69952 * 1 2 3 31 31 H 1.08998 * 109.47640 * 176.69584 * 1 2 3 32 32 H 1.09001 * 109.47337 * 190.61874 * 3 2 1 33 33 H 1.09001 * 109.47350 * 310.61775 * 3 2 1 34 34 H 1.09000 * 109.47272 * 70.61694 * 3 2 1 35 35 H 1.08992 * 110.77899 * 25.64472 * 4 2 1 36 36 H 1.09001 * 110.77569 * 262.20816 * 4 2 1 37 37 H 1.08995 * 109.46983 * 196.33485 * 6 5 4 38 38 H 1.08999 * 109.47459 * 316.33533 * 6 5 4 39 39 H 1.09004 * 109.46508 * 209.99689 * 10 9 7 40 40 H 1.08997 * 109.47105 * 329.99631 * 10 9 7 41 41 H 0.97000 * 119.99891 * 180.02562 * 14 13 11 42 42 H 1.09004 * 109.47393 * 209.99874 * 19 9 7 43 43 H 1.08997 * 109.47922 * 330.00793 * 19 9 7 44 44 H 1.08996 * 109.46795 * 299.99792 * 20 19 9 45 45 H 1.09004 * 109.46891 * 59.99298 * 20 19 9 46 46 H 1.08000 * 119.90504 * 0.32300 * 24 23 5 47 47 H 1.08000 * 119.86425 * 179.97438 * 25 24 23 48 48 H 1.08002 * 120.05496 * 179.91142 * 26 25 24 49 49 H 1.07996 * 119.95895 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0734 1.4302 0.0000 4 6 2.0774 -0.7938 1.2085 5 7 3.2830 -1.4433 0.6494 6 6 4.4848 -0.6425 0.9179 7 6 4.8942 -0.8180 2.3576 8 8 4.3173 -1.6224 3.0583 9 7 5.9015 -0.0812 2.8665 10 6 6.2998 -0.2523 4.2659 11 6 7.3655 -1.3138 4.3586 12 1 7.7112 -1.8114 3.4646 13 6 7.8992 -1.6496 5.5847 14 7 8.8296 -2.5755 5.6656 15 14 7.3007 -0.7893 7.1310 16 1 6.1540 -1.5400 7.7028 17 1 8.4023 -0.7355 8.1254 18 1 6.8699 0.5913 6.7943 19 6 6.5987 0.8901 2.0199 20 6 5.8982 2.2469 2.1171 21 6 6.5991 3.2230 1.2669 22 7 7.1384 3.9768 0.6110 23 6 3.0854 -1.6058 -0.7274 24 6 3.7408 -2.4379 -1.6336 25 6 3.3833 -2.4310 -2.9656 26 6 2.3718 -1.5999 -3.4115 27 6 1.7144 -0.7738 -2.5180 28 6 2.0671 -0.7781 -1.1847 29 1 -0.3634 0.4618 0.9180 30 1 -0.3634 0.5642 -0.8589 31 1 -0.3634 -1.0259 -0.0592 32 1 3.1467 1.4111 -0.1894 33 1 1.5771 2.0075 -0.7801 34 1 1.8836 1.8910 0.9694 35 1 1.3552 -1.5396 1.5405 36 1 2.3435 -0.1216 2.0242 37 1 5.2943 -0.9727 0.2671 38 1 4.2709 0.4091 0.7267 39 1 6.6909 0.6898 4.6500 40 1 5.4342 -0.5539 4.8557 41 1 9.2048 -2.8121 6.5282 42 1 7.6311 0.9894 2.3552 43 1 6.5840 0.5471 0.9854 44 1 4.8659 2.1477 1.7818 45 1 5.9128 2.5900 3.1517 46 1 4.5314 -3.0894 -1.2918 47 1 3.8950 -3.0776 -3.6631 48 1 2.0955 -1.5962 -4.4556 49 1 0.9241 -0.1247 -2.8649 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610710783.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:37:20 Heat of formation + Delta-G solvation = 41.648796 kcal Electronic energy + Delta-G solvation = -30325.832088 eV Core-core repulsion = 26446.558865 eV Total energy + Delta-G solvation = -3879.273223 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.40768 -39.22006 -37.11735 -36.85700 -35.35410 -34.49681 -32.82009 -31.06881 -30.32386 -30.13221 -28.68900 -27.70171 -27.11885 -24.83093 -24.04695 -22.92870 -22.33082 -21.12704 -19.64916 -18.58525 -17.75894 -17.11288 -16.85693 -16.36739 -16.18313 -15.72425 -15.52197 -15.08527 -14.73363 -14.63834 -14.10756 -14.08941 -13.87485 -13.68637 -13.60074 -13.52727 -12.96223 -12.76850 -12.64800 -12.55022 -12.46240 -12.39061 -12.26690 -12.10475 -12.06639 -11.74989 -11.66092 -11.57668 -11.19149 -11.10429 -11.03914 -10.88535 -10.69672 -10.57802 -10.22684 -9.71658 -9.57474 -8.95732 -8.92269 -8.62636 -7.94977 -7.88121 -6.11967 -4.11578 1.19380 1.28526 2.63340 2.71988 3.18802 3.24581 3.28206 3.31687 3.35678 3.62110 3.72341 4.09607 4.24059 4.35634 4.45896 4.71551 4.78531 4.84212 4.90540 4.94173 4.97475 5.00090 5.09810 5.18655 5.23350 5.28711 5.33170 5.37215 5.38702 5.46529 5.53477 5.59557 5.66668 5.68433 5.73068 5.78702 5.86064 5.94859 5.97172 6.06773 6.27176 6.37824 6.40524 6.54922 6.63764 6.80613 6.87715 7.16655 7.23451 7.47884 7.55251 8.05933 8.41756 8.84265 8.92771 9.47420 11.01376 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.011352 B = 0.003444 C = 0.003154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2465.959817 B = 8127.213398 C = 8876.776004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.057 4.057 3 C -0.139 4.139 4 C 0.068 3.932 5 N -0.470 5.470 6 C 0.034 3.966 7 C 0.509 3.491 8 O -0.508 6.508 9 N -0.594 5.594 10 C 0.217 3.783 11 C -0.531 4.531 12 H 0.075 0.925 13 C 0.073 3.927 14 N -0.895 5.895 15 Si 0.875 3.125 16 H -0.273 1.273 17 H -0.286 1.286 18 H -0.265 1.265 19 C 0.117 3.883 20 C -0.051 4.051 21 C 0.215 3.785 22 N -0.440 5.440 23 C 0.098 3.902 24 C -0.112 4.112 25 C -0.103 4.103 26 C -0.137 4.137 27 C -0.086 4.086 28 C -0.128 4.128 29 H 0.061 0.939 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.064 0.936 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.102 0.898 38 H 0.070 0.930 39 H 0.032 0.968 40 H 0.039 0.961 41 H 0.265 0.735 42 H 0.098 0.902 43 H 0.076 0.924 44 H 0.104 0.896 45 H 0.117 0.883 46 H 0.126 0.874 47 H 0.125 0.875 48 H 0.122 0.878 49 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.347 7.855 -15.118 22.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.059 4.059 3 C -0.196 4.196 4 C -0.059 4.059 5 N -0.185 5.185 6 C -0.095 4.095 7 C 0.295 3.705 8 O -0.382 6.382 9 N -0.327 5.327 10 C 0.096 3.904 11 C -0.570 4.570 12 H 0.093 0.907 13 C -0.129 4.129 14 N -0.534 5.534 15 Si 0.702 3.298 16 H -0.199 1.199 17 H -0.211 1.211 18 H -0.190 1.190 19 C -0.010 4.010 20 C -0.093 4.093 21 C -0.104 4.104 22 N -0.117 5.117 23 C 0.002 3.998 24 C -0.132 4.132 25 C -0.122 4.122 26 C -0.156 4.156 27 C -0.105 4.105 28 C -0.131 4.131 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.110 0.890 36 H 0.104 0.896 37 H 0.120 0.880 38 H 0.088 0.912 39 H 0.050 0.950 40 H 0.057 0.943 41 H 0.075 0.925 42 H 0.117 0.883 43 H 0.095 0.905 44 H 0.122 0.878 45 H 0.135 0.865 46 H 0.144 0.856 47 H 0.143 0.857 48 H 0.140 0.860 49 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -14.616 7.944 -15.228 22.553 hybrid contribution -0.363 0.659 0.741 1.056 sum -14.979 8.603 -14.487 22.544 Atomic orbital electron populations 1.21707 0.92874 1.02250 1.01966 1.20817 0.96737 0.95288 0.93029 1.21950 1.00945 0.94340 1.02357 1.23291 0.90706 0.96638 0.95275 1.59590 1.03243 1.47072 1.08628 1.22358 0.93422 0.96907 0.96768 1.20157 0.80512 0.81398 0.88482 1.90708 1.53466 1.33570 1.60420 1.47888 1.33525 1.37785 1.13527 1.19708 0.96492 0.97296 0.76858 1.21309 1.19842 1.20417 0.95403 0.90653 1.24857 0.94587 0.94737 0.98753 1.69894 1.27407 1.30776 1.25286 0.86877 0.78849 0.80524 0.83554 1.19898 1.21139 1.19010 1.21330 0.97878 0.85827 0.95954 1.19908 0.98980 0.91678 0.98721 1.29009 0.93698 0.93967 0.93681 1.81200 1.09384 1.10669 1.10456 1.19583 0.96399 0.95449 0.88370 1.20596 1.01368 0.99000 0.92239 1.20924 0.97370 0.98949 0.94958 1.21019 0.97390 0.97852 0.99327 1.20330 0.99572 0.99065 0.91540 1.20911 1.00144 0.97720 0.94297 0.92010 0.92474 0.92181 0.92441 0.92116 0.91707 0.88971 0.89556 0.87978 0.91229 0.95025 0.94281 0.92520 0.88329 0.90535 0.87825 0.86530 0.85594 0.85700 0.86026 0.86538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.05 8.46 37.16 0.31 -0.74 16 2 C -0.06 -0.56 0.96 -154.39 -0.15 -0.70 16 3 C -0.14 -1.16 8.24 37.15 0.31 -0.85 16 4 C 0.07 0.83 5.53 -2.42 -0.01 0.81 16 5 N -0.47 -6.64 4.58 -170.38 -0.78 -7.42 16 6 C 0.03 0.46 3.70 -4.98 -0.02 0.44 16 7 C 0.51 9.06 7.15 -10.98 -0.08 8.98 16 8 O -0.51 -11.42 15.61 5.56 0.09 -11.33 16 9 N -0.59 -10.28 2.46 -175.06 -0.43 -10.71 16 10 C 0.22 4.69 4.23 -5.19 -0.02 4.67 16 11 C -0.53 -14.31 9.94 -34.44 -0.34 -14.65 16 12 H 0.08 2.25 8.06 -52.49 -0.42 1.83 16 13 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 14 N -0.90 -26.84 13.96 55.43 0.77 -26.07 16 15 Si 0.88 20.51 27.47 -169.99 -4.67 15.84 16 16 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 17 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.27 -5.70 6.54 56.52 0.37 -5.33 16 19 C 0.12 1.47 5.08 -4.04 -0.02 1.45 16 20 C -0.05 -0.48 5.97 -29.51 -0.18 -0.66 16 21 C 0.21 2.43 15.43 -20.78 -0.32 2.10 16 22 N -0.44 -6.18 18.53 42.13 0.78 -5.40 16 23 C 0.10 1.25 5.49 -83.41 -0.46 0.79 16 24 C -0.11 -1.33 10.04 -39.27 -0.39 -1.72 16 25 C -0.10 -1.01 10.02 -39.67 -0.40 -1.41 16 26 C -0.14 -1.25 10.06 -39.53 -0.40 -1.65 16 27 C -0.09 -0.83 9.88 -39.67 -0.39 -1.22 16 28 C -0.13 -1.40 4.97 -104.04 -0.52 -1.92 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.50 6.01 -51.93 -0.31 0.19 16 33 H 0.06 0.46 8.13 -51.93 -0.42 0.03 16 34 H 0.06 0.48 8.06 -51.93 -0.42 0.06 16 35 H 0.09 1.17 7.92 -51.93 -0.41 0.76 16 36 H 0.09 1.06 7.06 -51.93 -0.37 0.69 16 37 H 0.10 1.32 7.51 -51.93 -0.39 0.93 16 38 H 0.07 0.74 4.09 -51.93 -0.21 0.53 16 39 H 0.03 0.63 7.13 -51.93 -0.37 0.26 16 40 H 0.04 0.91 6.85 -51.93 -0.36 0.56 16 41 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 42 H 0.10 1.34 8.07 -51.93 -0.42 0.92 16 43 H 0.08 0.83 6.61 -51.93 -0.34 0.49 16 44 H 0.10 0.77 7.12 -51.93 -0.37 0.40 16 45 H 0.12 1.03 8.14 -51.93 -0.42 0.60 16 46 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 47 H 0.13 0.95 8.06 -52.49 -0.42 0.52 16 48 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 49 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 LS Contribution 399.71 15.07 6.02 6.02 Total: -1.00 -34.38 399.71 -8.75 -43.14 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -7.36 Total: 0.24 kcal Atomic # 6 Polarization: -1.14 SS G_CDS: -3.17 Total: -4.32 kcal Atomic # 7 Polarization: -49.94 SS G_CDS: 0.34 Total: -49.60 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: 0.09 Total: -11.33 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -4.67 Total: 15.84 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -34.38 -8.75 -43.14 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610710783.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.784 kcal (2) G-P(sol) polarization free energy of solvation -34.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.135 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds