Wall clock time and date at job start Wed Apr 1 2020 00:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52993 * 110.80602 * 2 1 4 4 C 1.54608 * 110.73782 * 123.30021 * 2 1 3 5 5 N 1.47914 * 102.62776 * 143.93182 * 4 2 1 6 6 C 1.46893 * 111.00080 * 94.67667 * 5 4 2 7 7 C 1.50706 * 109.47247 * 76.33374 * 6 5 4 8 8 O 1.21280 * 119.99789 * 6.11148 * 7 6 5 9 9 N 1.34777 * 120.00247 * 186.11263 * 7 6 5 10 10 C 1.46498 * 119.99730 * 180.02562 * 9 7 6 11 11 C 1.50701 * 109.47137 * 90.00025 * 10 9 7 12 12 H 1.08001 * 119.99673 * 359.97438 * 11 10 9 13 13 C 1.37878 * 119.99948 * 179.97438 * 11 10 9 14 14 N 1.31517 * 119.99824 * 180.02562 * 13 11 10 15 15 Si 1.86793 * 119.99890 * 0.02562 * 13 11 10 16 16 H 1.48501 * 109.47413 * 90.00041 * 15 13 11 17 17 H 1.48502 * 109.47112 * 209.99782 * 15 13 11 18 18 H 1.48499 * 109.47547 * 329.99688 * 15 13 11 19 19 C 1.46496 * 119.99592 * 359.97438 * 9 7 6 20 20 C 1.53008 * 109.46990 * 90.00491 * 19 9 7 21 21 C 1.47203 * 109.47132 * 179.97438 * 20 19 9 22 22 N 6.90238 * 144.34427 * 8.73469 * 2 1 3 23 23 C 1.40041 * 107.90984 * 332.83910 * 5 4 2 24 24 C 1.39397 * 129.94344 * 198.05428 * 23 5 4 25 25 C 1.37915 * 120.19946 * 180.36616 * 24 23 5 26 26 C 1.38306 * 120.26248 * 359.94047 * 25 24 23 27 27 C 1.38306 * 119.88465 * 359.89793 * 26 25 24 28 28 C 1.37921 * 120.07784 * 0.02562 * 27 26 25 29 29 H 1.08996 * 109.47601 * 296.70408 * 1 2 3 30 30 H 1.09001 * 109.47243 * 56.69952 * 1 2 3 31 31 H 1.08998 * 109.47640 * 176.69584 * 1 2 3 32 32 H 1.09001 * 109.47337 * 190.61874 * 3 2 1 33 33 H 1.09001 * 109.47350 * 310.61775 * 3 2 1 34 34 H 1.09000 * 109.47272 * 70.61694 * 3 2 1 35 35 H 1.08992 * 110.77899 * 25.64472 * 4 2 1 36 36 H 1.09001 * 110.77569 * 262.20816 * 4 2 1 37 37 H 1.08995 * 109.46983 * 196.33485 * 6 5 4 38 38 H 1.08999 * 109.47459 * 316.33533 * 6 5 4 39 39 H 1.09004 * 109.46508 * 209.99689 * 10 9 7 40 40 H 1.08997 * 109.47105 * 329.99631 * 10 9 7 41 41 H 0.97000 * 119.99891 * 180.02562 * 14 13 11 42 42 H 1.09004 * 109.47393 * 209.99874 * 19 9 7 43 43 H 1.08997 * 109.47922 * 330.00793 * 19 9 7 44 44 H 1.08996 * 109.46795 * 299.99792 * 20 19 9 45 45 H 1.09004 * 109.46891 * 59.99298 * 20 19 9 46 46 H 1.08000 * 119.90504 * 0.32300 * 24 23 5 47 47 H 1.08000 * 119.86425 * 179.97438 * 25 24 23 48 48 H 1.08002 * 120.05496 * 179.91142 * 26 25 24 49 49 H 1.07996 * 119.95895 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0734 1.4302 0.0000 4 6 2.0774 -0.7938 1.2085 5 7 3.2830 -1.4433 0.6494 6 6 4.4848 -0.6425 0.9179 7 6 4.8942 -0.8180 2.3576 8 8 4.3173 -1.6224 3.0583 9 7 5.9015 -0.0812 2.8665 10 6 6.2998 -0.2523 4.2659 11 6 7.3655 -1.3138 4.3586 12 1 7.7112 -1.8114 3.4646 13 6 7.8992 -1.6496 5.5847 14 7 8.8296 -2.5755 5.6656 15 14 7.3007 -0.7893 7.1310 16 1 6.1540 -1.5400 7.7028 17 1 8.4023 -0.7355 8.1254 18 1 6.8699 0.5913 6.7943 19 6 6.5987 0.8901 2.0199 20 6 5.8982 2.2469 2.1171 21 6 6.5991 3.2230 1.2669 22 7 7.1384 3.9768 0.6110 23 6 3.0854 -1.6058 -0.7274 24 6 3.7408 -2.4379 -1.6336 25 6 3.3833 -2.4310 -2.9656 26 6 2.3718 -1.5999 -3.4115 27 6 1.7144 -0.7738 -2.5180 28 6 2.0671 -0.7781 -1.1847 29 1 -0.3634 0.4618 0.9180 30 1 -0.3634 0.5642 -0.8589 31 1 -0.3634 -1.0259 -0.0592 32 1 3.1467 1.4111 -0.1894 33 1 1.5771 2.0075 -0.7801 34 1 1.8836 1.8910 0.9694 35 1 1.3552 -1.5396 1.5405 36 1 2.3435 -0.1216 2.0242 37 1 5.2943 -0.9727 0.2671 38 1 4.2709 0.4091 0.7267 39 1 6.6909 0.6898 4.6500 40 1 5.4342 -0.5539 4.8557 41 1 9.2048 -2.8121 6.5282 42 1 7.6311 0.9894 2.3552 43 1 6.5840 0.5471 0.9854 44 1 4.8659 2.1477 1.7818 45 1 5.9128 2.5900 3.1517 46 1 4.5314 -3.0894 -1.2918 47 1 3.8950 -3.0776 -3.6631 48 1 2.0955 -1.5962 -4.4556 49 1 0.9241 -0.1247 -2.8649 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610710783.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:37:18 Heat of formation + Delta-G solvation = 20.641909 kcal Electronic energy + Delta-G solvation = -30326.743014 eV Core-core repulsion = 26446.558865 eV Total energy + Delta-G solvation = -3880.184150 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.29986 -40.54658 -38.07138 -37.77775 -36.69531 -35.38801 -34.77077 -32.39433 -31.23088 -31.00121 -29.96500 -28.66638 -28.07318 -25.86147 -25.24930 -23.97896 -23.65391 -22.05947 -20.42513 -19.92106 -19.15334 -18.48313 -18.22103 -17.45962 -17.10848 -16.90837 -16.36199 -16.19303 -16.08290 -15.77257 -15.36477 -15.00259 -14.91844 -14.64435 -14.45155 -14.43045 -14.42452 -14.02853 -13.76477 -13.59738 -13.48101 -13.41625 -13.26664 -13.13393 -12.99035 -12.79825 -12.74847 -12.68120 -12.41581 -12.34742 -11.99817 -11.93549 -11.89802 -11.78654 -11.68034 -11.43766 -10.82586 -10.76138 -10.16750 -9.70162 -9.46136 -8.78601 -8.27021 -6.31823 0.39904 0.50032 1.38903 1.43652 1.50667 1.65998 1.81590 1.83541 2.14843 2.37359 2.71817 2.86340 3.07287 3.13199 3.47229 3.67451 3.69828 3.92288 3.98207 4.04255 4.09968 4.14159 4.20925 4.27736 4.31024 4.46514 4.51997 4.58901 4.68797 4.77462 4.78629 4.81659 4.86943 4.89868 4.95986 4.97490 5.01186 5.04271 5.07729 5.20671 5.23313 5.40479 5.50576 5.53444 5.59293 5.63812 5.64872 5.86363 5.92775 6.30114 6.35046 6.59112 6.67965 6.71781 7.28461 7.46588 8.90153 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.011352 B = 0.003444 C = 0.003154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2465.959817 B = 8127.213398 C = 8876.776004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.049 4.049 3 C -0.138 4.138 4 C 0.065 3.935 5 N -0.499 5.499 6 C 0.049 3.951 7 C 0.506 3.494 8 O -0.564 6.564 9 N -0.595 5.595 10 C 0.225 3.775 11 C -0.534 4.534 12 H 0.026 0.974 13 C 0.008 3.992 14 N -0.951 5.951 15 Si 0.945 3.055 16 H -0.279 1.279 17 H -0.284 1.284 18 H -0.224 1.224 19 C 0.110 3.890 20 C -0.038 4.038 21 C 0.243 3.757 22 N -0.486 5.486 23 C 0.071 3.929 24 C -0.133 4.133 25 C -0.106 4.106 26 C -0.132 4.132 27 C -0.088 4.088 28 C -0.131 4.131 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.048 0.952 32 H 0.052 0.948 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.083 0.917 37 H 0.104 0.896 38 H 0.104 0.896 39 H 0.063 0.937 40 H 0.026 0.974 41 H 0.266 0.734 42 H 0.087 0.913 43 H 0.095 0.905 44 H 0.134 0.866 45 H 0.134 0.866 46 H 0.112 0.888 47 H 0.144 0.856 48 H 0.150 0.850 49 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.586 10.970 -16.405 26.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.050 4.050 3 C -0.195 4.195 4 C -0.062 4.062 5 N -0.215 5.215 6 C -0.079 4.079 7 C 0.294 3.706 8 O -0.441 6.441 9 N -0.326 5.326 10 C 0.103 3.897 11 C -0.573 4.573 12 H 0.045 0.955 13 C -0.190 4.190 14 N -0.591 5.591 15 Si 0.768 3.232 16 H -0.205 1.205 17 H -0.210 1.210 18 H -0.147 1.147 19 C -0.015 4.015 20 C -0.079 4.079 21 C -0.074 4.074 22 N -0.164 5.164 23 C -0.025 4.025 24 C -0.153 4.153 25 C -0.125 4.125 26 C -0.151 4.151 27 C -0.107 4.107 28 C -0.133 4.133 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.102 0.898 37 H 0.122 0.878 38 H 0.121 0.879 39 H 0.080 0.920 40 H 0.044 0.956 41 H 0.074 0.926 42 H 0.106 0.894 43 H 0.113 0.887 44 H 0.151 0.849 45 H 0.151 0.849 46 H 0.131 0.869 47 H 0.162 0.838 48 H 0.168 0.832 49 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -16.854 11.111 -16.573 26.118 hybrid contribution 0.359 -0.461 1.018 1.173 sum -16.495 10.650 -15.556 25.050 Atomic orbital electron populations 1.21697 0.91623 1.01992 1.03181 1.20767 0.97606 0.95613 0.91016 1.21960 1.00659 0.93287 1.03595 1.23272 0.90024 0.96497 0.96365 1.59506 1.03836 1.48175 1.10014 1.22237 0.93682 0.98869 0.93145 1.20941 0.79715 0.80106 0.89873 1.90676 1.55461 1.35866 1.62132 1.47834 1.33568 1.38655 1.12573 1.19404 0.94116 0.96586 0.79638 1.21637 1.20736 1.21181 0.93705 0.95526 1.25881 0.94657 0.95586 1.02863 1.70073 1.29553 1.33235 1.26259 0.85756 0.77857 0.81215 0.78367 1.20485 1.20985 1.14652 1.21530 0.97287 0.86640 0.95994 1.19860 0.99621 0.88864 0.99529 1.29112 0.92486 0.93203 0.92610 1.81245 1.10817 1.12275 1.12098 1.19700 0.97984 0.96960 0.87810 1.20718 1.01766 0.99394 0.93421 1.21185 0.97688 0.99314 0.94276 1.21399 0.96307 0.96637 1.00714 1.20659 0.99888 0.99212 0.90927 1.21101 0.99501 0.97473 0.95243 0.91153 0.90820 0.93264 0.92890 0.90722 0.90545 0.90595 0.89849 0.87784 0.87901 0.91950 0.95606 0.92561 0.89412 0.88724 0.84873 0.84856 0.86944 0.83795 0.83183 0.84151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.76 8.46 71.98 0.61 -1.15 16 2 C -0.05 -0.84 0.96 -52.11 -0.05 -0.89 16 3 C -0.14 -1.82 8.24 71.98 0.59 -1.22 16 4 C 0.06 1.57 5.53 86.66 0.48 2.04 16 5 N -0.50 -14.22 4.58 -692.95 -3.17 -17.39 16 6 C 0.05 1.29 3.70 85.56 0.32 1.61 16 7 C 0.51 18.10 7.15 87.66 0.63 18.73 16 8 O -0.56 -26.24 15.61 -3.03 -0.05 -26.29 16 9 N -0.59 -20.17 2.46 -826.14 -2.03 -22.20 16 10 C 0.22 9.58 4.23 85.63 0.36 9.94 16 11 C -0.53 -29.66 9.94 25.60 0.25 -29.40 16 12 H 0.03 1.68 8.06 -2.91 -0.02 1.66 16 13 C 0.01 0.43 5.47 84.65 0.46 0.89 16 14 N -0.95 -59.35 13.96 21.45 0.30 -59.05 16 15 Si 0.95 42.18 27.47 68.60 1.88 44.07 16 16 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 17 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 18 H -0.22 -8.44 6.54 99.48 0.65 -7.79 16 19 C 0.11 2.58 5.08 86.38 0.44 3.02 16 20 C -0.04 -0.58 5.97 28.79 0.17 -0.40 16 21 C 0.24 4.80 15.43 89.45 1.38 6.18 16 22 N -0.49 -12.71 18.53 20.00 0.37 -12.34 16 23 C 0.07 1.79 5.49 38.28 0.21 2.00 16 24 C -0.13 -3.16 10.04 22.47 0.23 -2.94 16 25 C -0.11 -1.92 10.02 22.21 0.22 -1.70 16 26 C -0.13 -2.01 10.06 22.30 0.22 -1.79 16 27 C -0.09 -1.43 9.88 22.21 0.22 -1.21 16 28 C -0.13 -2.61 4.97 -19.49 -0.10 -2.71 16 29 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.05 0.74 6.01 -2.39 -0.01 0.72 16 33 H 0.07 0.80 8.13 -2.39 -0.02 0.78 16 34 H 0.08 0.84 8.06 -2.39 -0.02 0.82 16 35 H 0.08 2.00 7.92 -2.39 -0.02 1.98 16 36 H 0.08 1.99 7.06 -2.39 -0.02 1.97 16 37 H 0.10 2.68 7.51 -2.39 -0.02 2.66 16 38 H 0.10 1.95 4.09 -2.39 -0.01 1.94 16 39 H 0.06 2.31 7.13 -2.38 -0.02 2.29 16 40 H 0.03 1.19 6.85 -2.39 -0.02 1.17 16 41 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 42 H 0.09 2.28 8.07 -2.38 -0.02 2.26 16 43 H 0.09 1.88 6.61 -2.39 -0.02 1.86 16 44 H 0.13 1.35 7.12 -2.39 -0.02 1.33 16 45 H 0.13 1.74 8.14 -2.38 -0.02 1.72 16 46 H 0.11 2.83 8.06 -2.91 -0.02 2.81 16 47 H 0.14 1.93 8.06 -2.91 -0.02 1.91 16 48 H 0.15 1.41 8.06 -2.91 -0.02 1.39 16 49 H 0.14 1.58 8.06 -2.91 -0.02 1.55 16 Total: -1.00 -80.65 399.71 4.85 -75.79 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: 0.90 Total: 16.39 kcal Atomic # 6 Polarization: -5.64 SS G_CDS: 6.65 Total: 1.01 kcal Atomic # 7 Polarization: -106.44 SS G_CDS: -4.53 Total: -110.97 kcal Atomic # 8 Polarization: -26.24 SS G_CDS: -0.05 Total: -26.29 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 1.88 Total: 44.07 kcal Total: -80.65 4.85 -75.79 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610710783.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.437 kcal (2) G-P(sol) polarization free energy of solvation -80.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds