Wall clock time and date at job start Wed Apr 1 2020 00:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 108.82386 * 2 1 4 4 C 1.45826 * 108.84301 * 118.49005 * 2 1 3 5 5 C 1.53998 * 113.28787 * 185.93706 * 4 2 1 6 6 N 1.44682 * 109.43925 * 278.98315 * 5 4 2 7 7 C 1.34772 * 119.72876 * 278.50170 * 6 5 4 8 8 O 1.21592 * 119.99755 * 175.08114 * 7 6 5 9 9 N 1.34777 * 120.00175 * 355.08825 * 7 6 5 10 10 C 1.46500 * 119.99890 * 185.13684 * 9 7 6 11 11 C 1.53036 * 109.46039 * 275.02501 * 10 9 7 12 12 C 1.53195 * 109.31384 * 178.60434 * 11 10 9 13 13 N 1.46924 * 108.76776 * 54.65301 * 12 11 10 14 14 C 1.36928 * 120.63392 * 126.36391 * 13 12 11 15 15 H 1.08004 * 120.00201 * 208.45278 * 14 13 12 16 16 C 1.38820 * 119.99954 * 28.44466 * 14 13 12 17 17 N 1.31612 * 119.99849 * 18.67767 * 16 14 13 18 18 Si 1.86797 * 120.00030 * 198.67497 * 16 14 13 19 19 H 1.48505 * 109.46947 * 94.98678 * 18 16 14 20 20 H 1.48491 * 109.47250 * 214.98883 * 18 16 14 21 21 H 1.48507 * 109.47323 * 334.99051 * 18 16 14 22 22 C 1.46928 * 118.73762 * 306.38603 * 13 12 11 23 23 C 1.53040 * 109.45993 * 154.97037 * 10 9 7 24 24 C 1.46392 * 120.53990 * 98.48351 * 6 5 4 25 25 C 1.53835 * 114.94870 * 317.49885 * 24 6 5 26 26 S 1.79886 * 111.14739 * 316.93224 * 25 24 6 27 27 H 1.09003 * 109.47259 * 301.51428 * 1 2 3 28 28 H 1.08991 * 109.47129 * 181.51059 * 1 2 3 29 29 H 1.09000 * 109.46605 * 61.50805 * 1 2 3 30 30 H 1.09005 * 109.46850 * 59.99868 * 3 2 1 31 31 H 1.09000 * 109.47389 * 179.97438 * 3 2 1 32 32 H 1.08996 * 109.47377 * 299.99782 * 3 2 1 33 33 H 1.09005 * 108.71598 * 306.91711 * 4 2 1 34 34 H 1.08998 * 108.72316 * 65.07585 * 4 2 1 35 35 H 1.08996 * 109.47521 * 38.97691 * 5 4 2 36 36 H 1.08995 * 109.47226 * 158.98742 * 5 4 2 37 37 H 0.97000 * 119.99789 * 5.12876 * 9 7 6 38 38 H 1.09004 * 109.46004 * 34.99719 * 10 9 7 39 39 H 1.09002 * 109.49502 * 298.56583 * 11 10 9 40 40 H 1.09000 * 109.50173 * 58.65937 * 11 10 9 41 41 H 1.08999 * 109.59554 * 294.86570 * 12 11 10 42 42 H 1.08997 * 109.70153 * 174.50352 * 12 11 10 43 43 H 0.97000 * 119.99914 * 179.97438 * 17 16 14 44 44 H 1.09002 * 109.58839 * 293.82201 * 22 13 12 45 45 H 1.08997 * 109.70404 * 173.46126 * 22 13 12 46 46 H 1.09008 * 109.49526 * 301.33279 * 23 10 9 47 47 H 1.08996 * 109.49860 * 61.42744 * 23 10 9 48 48 H 1.08992 * 108.39024 * 78.92032 * 24 6 5 49 49 H 1.09004 * 108.38676 * 196.08976 * 24 6 5 50 50 H 1.09000 * 109.14082 * 77.38567 * 25 24 6 51 51 H 1.09002 * 109.14102 * 196.52322 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0237 1.4481 0.0000 4 6 2.0010 -0.6583 1.2130 5 6 3.5292 -0.5878 1.3898 6 7 4.1550 -1.6135 0.5838 7 6 4.2198 -2.8785 1.0441 8 8 4.6633 -3.7613 0.3354 9 7 3.7930 -3.1649 2.2900 10 6 3.9665 -4.5151 2.8314 11 6 2.7981 -5.3973 2.3856 12 6 3.0008 -6.8169 2.9244 13 7 3.1833 -6.7483 4.3806 14 6 2.4013 -7.4981 5.2180 15 1 2.1939 -7.1499 6.2191 16 6 1.8749 -8.7056 4.7801 17 7 2.3981 -9.3113 3.7352 18 14 0.4240 -9.4710 5.6737 19 1 -0.8376 -9.0804 4.9946 20 1 0.5572 -10.9498 5.6582 21 1 0.3989 -8.9909 7.0789 22 6 4.2208 -5.8594 4.9214 23 6 4.0045 -4.4505 4.3599 24 6 4.7181 -1.2885 -0.7279 25 6 3.8543 -0.3529 -1.5911 26 16 2.1187 -0.8200 -1.5170 27 1 -0.3634 0.5372 0.8761 28 1 -0.3633 -1.0272 0.0271 29 1 -0.3632 0.4902 -0.9032 30 1 1.6545 1.9578 0.8900 31 1 3.1136 1.4605 0.0005 32 1 1.6547 1.9578 -0.8900 33 1 1.5271 -0.1863 2.0737 34 1 1.7023 -1.7061 1.1809 35 1 3.8868 0.3919 1.0733 36 1 3.7813 -0.7453 2.4385 37 1 3.3710 -2.4771 2.8282 38 1 4.9014 -4.9369 2.4624 39 1 1.8653 -4.9897 2.7753 40 1 2.7571 -5.4240 1.2967 41 1 3.8851 -7.2593 2.4657 42 1 2.1264 -7.4257 2.6941 43 1 2.0305 -10.1552 3.4295 44 1 5.2046 -6.2236 4.6256 45 1 4.1524 -5.8338 6.0089 46 1 4.8226 -3.8033 4.6765 47 1 3.0603 -4.0520 4.7308 48 1 5.6898 -0.8183 -0.5780 49 1 4.8713 -2.2180 -1.2762 50 1 3.9653 0.6698 -1.2307 51 1 4.1945 -0.4054 -2.6253 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619032963.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:29:11 Heat of formation + Delta-G solvation = -1.399207 kcal Electronic energy + Delta-G solvation = -29416.316374 eV Core-core repulsion = 25670.620401 eV Total energy + Delta-G solvation = -3745.695973 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.188 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -40.53272 -38.29530 -37.31886 -35.37001 -34.42563 -32.48091 -31.38622 -29.94001 -29.44369 -29.03784 -27.74417 -25.07224 -24.48488 -23.36893 -22.17200 -21.76500 -20.90868 -19.72454 -19.04957 -17.86398 -16.89684 -16.73710 -16.53020 -15.83904 -15.41396 -15.22890 -14.79254 -14.62371 -14.33178 -13.90005 -13.80751 -13.54507 -13.46109 -13.32237 -12.94677 -12.87158 -12.53364 -12.47458 -12.40650 -12.22498 -12.11847 -11.75380 -11.57230 -11.43226 -11.22560 -11.10839 -11.02278 -10.86138 -10.71538 -10.33294 -10.17832 -10.04120 -9.91438 -9.86636 -9.71038 -9.48184 -8.82874 -8.52451 -8.33412 -7.82961 -6.64661 -5.75317 -3.17709 1.42043 2.26943 2.72296 3.38354 3.40308 3.47197 3.48737 4.01805 4.15575 4.31412 4.48867 4.50580 4.52629 4.62842 4.80133 5.01836 5.02930 5.12928 5.21384 5.31973 5.33008 5.34885 5.38787 5.43131 5.46124 5.50358 5.51668 5.60965 5.69072 5.70493 5.82087 5.88060 5.93310 6.13639 6.27651 6.38423 6.46803 6.51799 6.65936 6.69787 6.82869 6.95160 6.98900 7.11833 7.43199 7.72117 7.83667 8.11789 8.48643 8.80361 9.24389 9.88086 10.45506 11.33252 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.017317 B = 0.002795 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.524443 B =10017.034201 C =10502.717350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.020 4.020 3 C -0.155 4.155 4 C -0.142 4.142 5 C 0.104 3.896 6 N -0.620 5.620 7 C 0.709 3.291 8 O -0.582 6.582 9 N -0.738 5.738 10 C 0.169 3.831 11 C -0.145 4.145 12 C 0.175 3.825 13 N -0.592 5.592 14 C -0.256 4.256 15 H 0.065 0.935 16 C 0.004 3.996 17 N -0.898 5.898 18 Si 0.900 3.100 19 H -0.288 1.288 20 H -0.292 1.292 21 H -0.279 1.279 22 C 0.150 3.850 23 C -0.138 4.138 24 C 0.129 3.871 25 C -0.112 4.112 26 S -0.228 6.228 27 H 0.070 0.930 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.389 0.611 38 H 0.079 0.921 39 H 0.052 0.948 40 H 0.055 0.945 41 H 0.021 0.979 42 H 0.085 0.915 43 H 0.254 0.746 44 H 0.020 0.980 45 H 0.058 0.942 46 H 0.053 0.947 47 H 0.061 0.939 48 H 0.062 0.938 49 H 0.097 0.903 50 H 0.087 0.913 51 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.047 25.798 -7.347 26.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.129 4.129 3 C -0.213 4.213 4 C -0.182 4.182 5 C -0.021 4.021 6 N -0.358 5.358 7 C 0.410 3.590 8 O -0.459 6.459 9 N -0.392 5.392 10 C 0.065 3.935 11 C -0.186 4.186 12 C 0.049 3.951 13 N -0.315 5.315 14 C -0.386 4.386 15 H 0.083 0.917 16 C -0.195 4.195 17 N -0.542 5.542 18 Si 0.730 3.270 19 H -0.215 1.215 20 H -0.218 1.218 21 H -0.204 1.204 22 C 0.022 3.978 23 C -0.178 4.178 24 C 0.003 3.997 25 C -0.261 4.261 26 S 0.000 6.000 27 H 0.089 0.911 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.101 0.899 36 H 0.096 0.904 37 H 0.223 0.777 38 H 0.097 0.903 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.039 0.961 42 H 0.103 0.897 43 H 0.064 0.936 44 H 0.038 0.962 45 H 0.076 0.924 46 H 0.072 0.928 47 H 0.080 0.920 48 H 0.080 0.920 49 H 0.115 0.885 50 H 0.106 0.894 51 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 0.799 24.305 -8.648 25.810 hybrid contribution -0.328 0.755 1.411 1.633 sum 0.471 25.060 -7.237 26.088 Atomic orbital electron populations 1.21749 0.91149 1.03228 1.02740 1.21291 0.99415 0.97213 0.94993 1.22354 1.01368 0.94299 1.03287 1.21273 0.96674 1.03075 0.97197 1.21473 0.92019 0.92589 0.96035 1.46507 1.63018 1.07530 1.18709 1.15832 0.78919 0.81956 0.82281 1.90920 1.52919 1.45221 1.56834 1.45629 1.64728 1.14281 1.14566 1.20895 0.99865 0.79727 0.92981 1.22546 0.96960 0.99169 0.99883 1.20725 1.00996 0.90648 0.82774 1.44102 1.37156 1.48174 1.02054 1.19169 1.23524 0.98827 0.97047 0.91694 1.25055 1.00257 0.95667 0.98534 1.70060 1.40123 1.16494 1.27519 0.86304 0.83069 0.78281 0.79298 1.21500 1.21809 1.20397 1.20822 0.92008 0.88032 0.96916 1.22347 1.00961 1.00516 0.94002 1.21334 0.94107 1.00824 0.83460 1.23916 0.95433 1.02367 1.04410 1.86853 1.08487 1.71751 1.32865 0.91118 0.91599 0.91541 0.91243 0.91973 0.91384 0.90037 0.89985 0.89909 0.90376 0.77680 0.90258 0.92925 0.92609 0.96127 0.89651 0.93604 0.96235 0.92398 0.92786 0.91986 0.92014 0.88473 0.89414 0.86714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.99 8.27 37.16 0.31 -0.68 16 2 C -0.02 -0.16 0.76 -94.01 -0.07 -0.23 16 3 C -0.15 -0.89 7.42 37.16 0.28 -0.61 16 4 C -0.14 -1.17 3.95 -29.60 -0.12 -1.29 16 5 C 0.10 0.84 4.88 -4.49 -0.02 0.82 16 6 N -0.62 -7.15 2.40 -179.80 -0.43 -7.58 16 7 C 0.71 11.18 7.88 -86.92 -0.68 10.49 16 8 O -0.58 -11.81 15.33 5.28 0.08 -11.73 16 9 N -0.74 -10.79 4.93 -58.64 -0.29 -11.08 16 10 C 0.17 3.02 2.38 -67.89 -0.16 2.86 16 11 C -0.15 -3.00 5.65 -26.61 -0.15 -3.15 16 12 C 0.17 4.35 5.32 -3.71 -0.02 4.33 16 13 N -0.59 -14.95 2.99 -172.32 -0.51 -15.46 16 14 C -0.26 -7.05 9.57 -15.06 -0.14 -7.20 16 15 H 0.07 1.75 7.90 -52.48 -0.41 1.33 16 16 C 0.00 0.11 4.86 -17.43 -0.08 0.03 16 17 N -0.90 -26.60 11.33 55.49 0.63 -25.97 16 18 Si 0.90 21.84 29.59 -169.99 -5.03 16.81 16 19 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 20 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 C 0.15 3.10 6.51 -3.71 -0.02 3.08 16 23 C -0.14 -2.31 5.55 -26.61 -0.15 -2.46 16 24 C 0.13 1.33 6.02 -3.67 -0.02 1.31 16 25 C -0.11 -0.91 5.72 37.59 0.21 -0.69 16 26 S -0.23 -2.40 20.54 -107.50 -2.21 -4.61 16 27 H 0.07 0.43 8.11 -51.93 -0.42 0.00 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.33 3.94 -51.93 -0.20 0.13 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.08 0.52 8.04 -51.93 -0.42 0.10 16 34 H 0.08 0.93 7.81 -51.93 -0.41 0.52 16 35 H 0.08 0.53 5.29 -51.93 -0.27 0.25 16 36 H 0.08 0.57 6.65 -51.93 -0.35 0.23 16 37 H 0.39 4.59 6.34 -40.82 -0.26 4.34 16 38 H 0.08 1.61 7.66 -51.93 -0.40 1.21 16 39 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.06 1.20 8.08 -51.93 -0.42 0.78 16 41 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.09 2.37 6.13 -51.93 -0.32 2.05 16 43 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 44 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.06 1.15 7.94 -51.93 -0.41 0.74 16 46 H 0.05 0.77 8.14 -51.92 -0.42 0.35 16 47 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 48 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 49 H 0.10 1.27 6.92 -51.93 -0.36 0.91 16 50 H 0.09 0.55 5.42 -51.79 -0.28 0.27 16 51 H 0.11 0.80 8.14 -51.78 -0.42 0.38 16 LS Contribution 387.27 15.07 5.84 5.84 Total: -1.00 -33.07 387.27 -11.49 -44.56 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -8.71 Total: 2.61 kcal Atomic # 6 Polarization: 7.46 SS G_CDS: -0.85 Total: 6.61 kcal Atomic # 7 Polarization: -59.49 SS G_CDS: -0.61 Total: -60.10 kcal Atomic # 8 Polarization: -11.81 SS G_CDS: 0.08 Total: -11.73 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.03 Total: 16.81 kcal Atomic # 16 Polarization: -2.40 SS G_CDS: -2.21 Total: -4.61 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.07 -11.49 -44.56 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619032963.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.161 kcal (2) G-P(sol) polarization free energy of solvation -33.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds