Wall clock time and date at job start Wed Apr 1 2020 00:29:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 108.82386 * 2 1 4 4 C 1.45826 * 108.84301 * 118.49005 * 2 1 3 5 5 C 1.53998 * 113.28787 * 185.93706 * 4 2 1 6 6 N 1.44682 * 109.43925 * 278.98315 * 5 4 2 7 7 C 1.34772 * 119.72876 * 278.50170 * 6 5 4 8 8 O 1.21592 * 119.99755 * 175.08114 * 7 6 5 9 9 N 1.34777 * 120.00175 * 355.08825 * 7 6 5 10 10 C 1.46500 * 119.99890 * 185.13684 * 9 7 6 11 11 C 1.53036 * 109.46039 * 275.02501 * 10 9 7 12 12 C 1.53195 * 109.31384 * 178.60434 * 11 10 9 13 13 N 1.46924 * 108.76776 * 54.65301 * 12 11 10 14 14 C 1.36928 * 120.63392 * 126.36391 * 13 12 11 15 15 H 1.08004 * 120.00201 * 208.45278 * 14 13 12 16 16 C 1.38820 * 119.99954 * 28.44466 * 14 13 12 17 17 N 1.31612 * 119.99849 * 18.67767 * 16 14 13 18 18 Si 1.86797 * 120.00030 * 198.67497 * 16 14 13 19 19 H 1.48505 * 109.46947 * 94.98678 * 18 16 14 20 20 H 1.48491 * 109.47250 * 214.98883 * 18 16 14 21 21 H 1.48507 * 109.47323 * 334.99051 * 18 16 14 22 22 C 1.46928 * 118.73762 * 306.38603 * 13 12 11 23 23 C 1.53040 * 109.45993 * 154.97037 * 10 9 7 24 24 C 1.46392 * 120.53990 * 98.48351 * 6 5 4 25 25 C 1.53835 * 114.94870 * 317.49885 * 24 6 5 26 26 S 1.79886 * 111.14739 * 316.93224 * 25 24 6 27 27 H 1.09003 * 109.47259 * 301.51428 * 1 2 3 28 28 H 1.08991 * 109.47129 * 181.51059 * 1 2 3 29 29 H 1.09000 * 109.46605 * 61.50805 * 1 2 3 30 30 H 1.09005 * 109.46850 * 59.99868 * 3 2 1 31 31 H 1.09000 * 109.47389 * 179.97438 * 3 2 1 32 32 H 1.08996 * 109.47377 * 299.99782 * 3 2 1 33 33 H 1.09005 * 108.71598 * 306.91711 * 4 2 1 34 34 H 1.08998 * 108.72316 * 65.07585 * 4 2 1 35 35 H 1.08996 * 109.47521 * 38.97691 * 5 4 2 36 36 H 1.08995 * 109.47226 * 158.98742 * 5 4 2 37 37 H 0.97000 * 119.99789 * 5.12876 * 9 7 6 38 38 H 1.09004 * 109.46004 * 34.99719 * 10 9 7 39 39 H 1.09002 * 109.49502 * 298.56583 * 11 10 9 40 40 H 1.09000 * 109.50173 * 58.65937 * 11 10 9 41 41 H 1.08999 * 109.59554 * 294.86570 * 12 11 10 42 42 H 1.08997 * 109.70153 * 174.50352 * 12 11 10 43 43 H 0.97000 * 119.99914 * 179.97438 * 17 16 14 44 44 H 1.09002 * 109.58839 * 293.82201 * 22 13 12 45 45 H 1.08997 * 109.70404 * 173.46126 * 22 13 12 46 46 H 1.09008 * 109.49526 * 301.33279 * 23 10 9 47 47 H 1.08996 * 109.49860 * 61.42744 * 23 10 9 48 48 H 1.08992 * 108.39024 * 78.92032 * 24 6 5 49 49 H 1.09004 * 108.38676 * 196.08976 * 24 6 5 50 50 H 1.09000 * 109.14082 * 77.38567 * 25 24 6 51 51 H 1.09002 * 109.14102 * 196.52322 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0237 1.4481 0.0000 4 6 2.0010 -0.6583 1.2130 5 6 3.5292 -0.5878 1.3898 6 7 4.1550 -1.6135 0.5838 7 6 4.2198 -2.8785 1.0441 8 8 4.6633 -3.7613 0.3354 9 7 3.7930 -3.1649 2.2900 10 6 3.9665 -4.5151 2.8314 11 6 2.7981 -5.3973 2.3856 12 6 3.0008 -6.8169 2.9244 13 7 3.1833 -6.7483 4.3806 14 6 2.4013 -7.4981 5.2180 15 1 2.1939 -7.1499 6.2191 16 6 1.8749 -8.7056 4.7801 17 7 2.3981 -9.3113 3.7352 18 14 0.4240 -9.4710 5.6737 19 1 -0.8376 -9.0804 4.9946 20 1 0.5572 -10.9498 5.6582 21 1 0.3989 -8.9909 7.0789 22 6 4.2208 -5.8594 4.9214 23 6 4.0045 -4.4505 4.3599 24 6 4.7181 -1.2885 -0.7279 25 6 3.8543 -0.3529 -1.5911 26 16 2.1187 -0.8200 -1.5170 27 1 -0.3634 0.5372 0.8761 28 1 -0.3633 -1.0272 0.0271 29 1 -0.3632 0.4902 -0.9032 30 1 1.6545 1.9578 0.8900 31 1 3.1136 1.4605 0.0005 32 1 1.6547 1.9578 -0.8900 33 1 1.5271 -0.1863 2.0737 34 1 1.7023 -1.7061 1.1809 35 1 3.8868 0.3919 1.0733 36 1 3.7813 -0.7453 2.4385 37 1 3.3710 -2.4771 2.8282 38 1 4.9014 -4.9369 2.4624 39 1 1.8653 -4.9897 2.7753 40 1 2.7571 -5.4240 1.2967 41 1 3.8851 -7.2593 2.4657 42 1 2.1264 -7.4257 2.6941 43 1 2.0305 -10.1552 3.4295 44 1 5.2046 -6.2236 4.6256 45 1 4.1524 -5.8338 6.0089 46 1 4.8226 -3.8033 4.6765 47 1 3.0603 -4.0520 4.7308 48 1 5.6898 -0.8183 -0.5780 49 1 4.8713 -2.2180 -1.2762 50 1 3.9653 0.6698 -1.2307 51 1 4.1945 -0.4054 -2.6253 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619032963.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:29:09 Heat of formation + Delta-G solvation = -21.539658 kcal Electronic energy + Delta-G solvation = -29417.189729 eV Core-core repulsion = 25670.620401 eV Total energy + Delta-G solvation = -3746.569328 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.188 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.64158 -39.48051 -38.60844 -36.39089 -35.96345 -34.05806 -32.59697 -31.66103 -30.92411 -29.94382 -28.27038 -26.92328 -25.17421 -24.58807 -23.89792 -23.19788 -21.75859 -21.22207 -20.34066 -19.02882 -18.54246 -17.84128 -17.39081 -16.88483 -16.59798 -16.35530 -16.17701 -15.70053 -15.40039 -15.36688 -15.21942 -14.95885 -14.77019 -14.44010 -14.17189 -14.06100 -13.98208 -13.40766 -13.17706 -13.09251 -13.03144 -12.92262 -12.74550 -12.62251 -12.59446 -12.46661 -12.24879 -12.10681 -12.01412 -11.90405 -11.84803 -11.64157 -11.53179 -11.38912 -11.08423 -10.58045 -10.55700 -10.09839 -9.50862 -8.71725 -8.64369 -7.87536 -5.33445 0.74471 1.47193 1.48945 1.54203 1.58484 1.73603 2.16446 2.51872 2.98834 3.28462 3.52573 3.66407 3.68001 3.80526 3.88582 3.93009 4.00034 4.09799 4.22530 4.34410 4.39055 4.47549 4.49871 4.52764 4.61927 4.66962 4.72871 4.74949 4.77089 4.80635 4.84810 4.88453 4.90736 4.93654 5.05598 5.09208 5.12817 5.14534 5.23566 5.31867 5.36954 5.43914 5.60102 5.62360 5.65290 5.68320 5.93785 6.38476 7.01451 7.12986 7.60848 7.84273 8.37994 9.19778 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.017317 B = 0.002795 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.524443 B =10017.034201 C =10502.717350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.007 4.007 3 C -0.149 4.149 4 C -0.139 4.139 5 C 0.097 3.903 6 N -0.611 5.611 7 C 0.703 3.297 8 O -0.636 6.636 9 N -0.723 5.723 10 C 0.182 3.818 11 C -0.127 4.127 12 C 0.186 3.814 13 N -0.608 5.608 14 C -0.262 4.262 15 H 0.075 0.925 16 C -0.054 4.054 17 N -0.938 5.938 18 Si 0.968 3.032 19 H -0.288 1.288 20 H -0.298 1.298 21 H -0.261 1.261 22 C 0.142 3.858 23 C -0.119 4.119 24 C 0.126 3.874 25 C -0.090 4.090 26 S -0.309 6.309 27 H 0.093 0.907 28 H 0.041 0.959 29 H 0.065 0.935 30 H 0.090 0.910 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.111 0.889 34 H 0.046 0.954 35 H 0.112 0.888 36 H 0.095 0.905 37 H 0.408 0.592 38 H 0.053 0.947 39 H 0.058 0.942 40 H 0.038 0.962 41 H -0.012 1.012 42 H 0.050 0.950 43 H 0.249 0.751 44 H 0.011 0.989 45 H 0.070 0.930 46 H 0.093 0.907 47 H 0.075 0.925 48 H 0.087 0.913 49 H 0.060 0.940 50 H 0.116 0.884 51 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.850 30.097 -5.238 30.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.116 4.116 3 C -0.207 4.207 4 C -0.179 4.179 5 C -0.026 4.026 6 N -0.346 5.346 7 C 0.404 3.596 8 O -0.517 6.517 9 N -0.378 5.378 10 C 0.077 3.923 11 C -0.168 4.168 12 C 0.059 3.941 13 N -0.332 5.332 14 C -0.392 4.392 15 H 0.093 0.907 16 C -0.250 4.250 17 N -0.584 5.584 18 Si 0.796 3.204 19 H -0.215 1.215 20 H -0.225 1.225 21 H -0.185 1.185 22 C 0.016 3.984 23 C -0.159 4.159 24 C 0.000 4.000 25 C -0.239 4.239 26 S -0.081 6.081 27 H 0.112 0.888 28 H 0.060 0.940 29 H 0.084 0.916 30 H 0.109 0.891 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.129 0.871 34 H 0.065 0.935 35 H 0.130 0.870 36 H 0.113 0.887 37 H 0.245 0.755 38 H 0.071 0.929 39 H 0.077 0.923 40 H 0.056 0.944 41 H 0.006 0.994 42 H 0.068 0.932 43 H 0.058 0.942 44 H 0.029 0.971 45 H 0.088 0.912 46 H 0.111 0.889 47 H 0.094 0.906 48 H 0.105 0.895 49 H 0.079 0.921 50 H 0.134 0.866 51 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 0.592 28.708 -6.509 29.443 hybrid contribution -0.237 -0.545 0.722 0.935 sum 0.355 28.163 -5.787 28.754 Atomic orbital electron populations 1.21761 0.91174 1.02058 1.03775 1.21350 0.99287 0.98288 0.92688 1.22321 1.01835 0.92211 1.04349 1.21257 0.96963 1.01249 0.98452 1.21813 0.91640 0.92688 0.96453 1.46507 1.62222 1.06629 1.19264 1.16057 0.78554 0.82873 0.82067 1.90894 1.55207 1.47383 1.58219 1.45190 1.64803 1.13276 1.14565 1.20488 0.96982 0.80764 0.94103 1.22273 0.98681 0.97301 0.98501 1.20401 0.97848 0.92453 0.83376 1.44344 1.38387 1.48753 1.01712 1.19583 1.23333 0.98756 0.97529 0.90706 1.25890 1.02898 0.96521 0.99642 1.70232 1.41723 1.16848 1.29560 0.85234 0.79459 0.76778 0.78898 1.21535 1.22482 1.18537 1.21043 0.90274 0.89319 0.97757 1.22134 1.03248 0.98329 0.92150 1.21462 0.95827 0.99871 0.82874 1.23867 0.92497 1.02879 1.04658 1.87208 1.11509 1.73404 1.35967 0.88826 0.93954 0.91600 0.89114 0.91109 0.91416 0.87058 0.93483 0.86968 0.88715 0.75470 0.92891 0.92333 0.94364 0.99432 0.93200 0.94238 0.97112 0.91158 0.88856 0.90594 0.89507 0.92125 0.86574 0.85793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.74 8.27 71.98 0.60 -1.15 16 2 C -0.01 -0.09 0.76 -12.99 -0.01 -0.10 16 3 C -0.15 -1.06 7.42 71.98 0.53 -0.53 16 4 C -0.14 -1.87 3.95 28.73 0.11 -1.76 16 5 C 0.10 1.20 4.88 87.06 0.42 1.62 16 6 N -0.61 -13.03 2.40 -841.03 -2.02 -15.05 16 7 C 0.70 21.95 7.88 179.06 1.41 23.36 16 8 O -0.64 -26.90 15.33 -4.00 -0.06 -26.96 16 9 N -0.72 -20.06 4.93 -457.69 -2.26 -22.32 16 10 C 0.18 6.43 2.38 45.02 0.11 6.54 16 11 C -0.13 -5.42 5.65 30.67 0.17 -5.25 16 12 C 0.19 9.74 5.32 86.36 0.46 10.20 16 13 N -0.61 -31.14 2.99 -699.09 -2.09 -33.23 16 14 C -0.26 -14.47 9.57 84.04 0.80 -13.67 16 15 H 0.08 3.92 7.90 -2.91 -0.02 3.90 16 16 C -0.05 -3.10 4.86 84.87 0.41 -2.68 16 17 N -0.94 -57.87 11.33 21.65 0.25 -57.63 16 18 Si 0.97 45.52 29.59 68.60 2.03 47.55 16 19 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 20 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 21 H -0.26 -11.41 7.11 99.48 0.71 -10.71 16 22 C 0.14 5.74 6.51 86.36 0.56 6.30 16 23 C -0.12 -3.67 5.55 30.67 0.17 -3.50 16 24 C 0.13 2.43 6.02 86.68 0.52 2.95 16 25 C -0.09 -1.29 5.72 72.26 0.41 -0.87 16 26 S -0.31 -6.36 20.54 -56.49 -1.16 -7.52 16 27 H 0.09 0.82 8.11 -2.39 -0.02 0.80 16 28 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.09 0.33 8.14 -2.38 -0.02 0.32 16 31 H 0.07 0.38 3.94 -2.39 -0.01 0.37 16 32 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.11 0.89 8.04 -2.38 -0.02 0.87 16 34 H 0.05 1.00 7.81 -2.39 -0.02 0.98 16 35 H 0.11 0.81 5.29 -2.39 -0.01 0.79 16 36 H 0.09 0.91 6.65 -2.39 -0.02 0.90 16 37 H 0.41 8.30 6.34 -92.71 -0.59 7.71 16 38 H 0.05 2.19 7.66 -2.39 -0.02 2.17 16 39 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 40 H 0.04 1.74 8.08 -2.39 -0.02 1.72 16 41 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 42 H 0.05 2.94 6.13 -2.39 -0.01 2.93 16 43 H 0.25 14.89 8.31 -92.71 -0.77 14.12 16 44 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 45 H 0.07 2.66 7.94 -2.39 -0.02 2.64 16 46 H 0.09 2.23 8.14 -2.38 -0.02 2.21 16 47 H 0.08 2.19 8.14 -2.39 -0.02 2.18 16 48 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 49 H 0.06 1.65 6.92 -2.38 -0.02 1.63 16 50 H 0.12 0.99 5.42 -2.47 -0.01 0.98 16 51 H 0.12 1.55 8.14 -2.48 -0.02 1.53 16 Total: -1.00 -78.12 387.27 1.71 -76.41 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: 0.33 Total: 17.29 kcal Atomic # 6 Polarization: 14.77 SS G_CDS: 6.69 Total: 21.47 kcal Atomic # 7 Polarization: -122.11 SS G_CDS: -6.12 Total: -128.23 kcal Atomic # 8 Polarization: -26.90 SS G_CDS: -0.06 Total: -26.96 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal Atomic # 16 Polarization: -6.36 SS G_CDS: -1.16 Total: -7.52 kcal Total: -78.12 1.71 -76.41 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619032963.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.870 kcal (2) G-P(sol) polarization free energy of solvation -78.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds