Wall clock time and date at job start Wed Apr 1 2020 00:31:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.39867 * 125.89783 * 2 1 4 4 C 1.35315 * 107.91771 * 179.71707 * 3 2 1 5 5 C 1.50706 * 126.12503 * 180.26878 * 4 3 2 6 6 N 1.34949 * 107.74991 * 0.42542 * 4 3 2 7 7 C 1.46497 * 126.03930 * 179.83990 * 6 4 3 8 8 C 1.53003 * 109.46949 * 269.71598 * 7 6 4 9 9 C 1.53000 * 109.46847 * 180.02562 * 8 7 6 10 10 N 1.46509 * 109.46875 * 179.97438 * 9 8 7 11 11 C 1.34777 * 119.99894 * 180.02562 * 10 9 8 12 12 O 1.21282 * 119.99852 * 359.97438 * 11 10 9 13 13 C 1.50690 * 120.00015 * 179.97438 * 11 10 9 14 14 C 1.50694 * 109.47500 * 179.97438 * 13 11 10 15 15 C 1.37634 * 120.12933 * 265.00250 * 14 13 11 16 16 C 1.38620 * 120.25163 * 179.97438 * 15 14 13 17 17 C 1.38651 * 120.49721 * 0.02562 * 16 15 14 18 18 C 1.37598 * 120.25296 * 0.02562 * 17 16 15 19 19 C 1.40701 * 120.13012 * 84.72168 * 14 13 11 20 20 C 1.41401 * 120.24092 * 0.02562 * 19 14 13 21 21 H 1.07997 * 119.99518 * 333.89100 * 20 19 14 22 22 C 1.39942 * 120.00096 * 153.89106 * 20 19 14 23 23 N 1.30824 * 120.00023 * 343.71760 * 22 20 19 24 24 Si 1.86802 * 119.99943 * 163.71352 * 22 20 19 25 25 H 1.48505 * 109.46757 * 60.00195 * 24 22 20 26 26 H 1.48500 * 109.47077 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.47229 * 300.00517 * 24 22 20 28 28 N 1.30838 * 125.89741 * 179.97438 * 2 1 3 29 29 H 1.08989 * 109.46975 * 269.99619 * 1 2 3 30 30 H 1.09001 * 109.46771 * 29.99871 * 1 2 3 31 31 H 1.08999 * 109.47049 * 149.99650 * 1 2 3 32 32 H 1.07996 * 126.03972 * 359.97438 * 3 2 1 33 33 H 1.09001 * 109.46835 * 270.18288 * 5 4 3 34 34 H 1.08993 * 109.47560 * 30.18549 * 5 4 3 35 35 H 1.09000 * 109.47203 * 150.19210 * 5 4 3 36 36 H 1.09000 * 109.46907 * 149.71519 * 7 6 4 37 37 H 1.08994 * 109.47239 * 29.71489 * 7 6 4 38 38 H 1.09000 * 109.47381 * 60.00211 * 8 7 6 39 39 H 1.09004 * 109.47266 * 299.99953 * 8 7 6 40 40 H 1.08994 * 109.47215 * 299.99813 * 9 8 7 41 41 H 1.09002 * 109.46969 * 60.00449 * 9 8 7 42 42 H 0.96991 * 119.99763 * 359.97438 * 10 9 8 43 43 H 1.09004 * 109.47240 * 299.99900 * 13 11 10 44 44 H 1.09000 * 109.47257 * 60.00067 * 13 11 10 45 45 H 1.08005 * 119.87596 * 359.97438 * 15 14 13 46 46 H 1.08003 * 119.74924 * 179.97438 * 16 15 14 47 47 H 1.08003 * 119.87445 * 179.97438 * 17 16 15 48 48 H 1.07996 * 120.12709 * 179.97438 * 18 17 16 49 49 H 0.96993 * 119.99888 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3271 1.1330 0.0000 4 6 3.6142 0.7153 0.0064 5 6 4.8350 1.5989 0.0144 6 7 3.6088 -0.6341 0.0007 7 6 4.7900 -1.5008 0.0012 8 6 5.2019 -1.8022 -1.4411 9 6 6.4351 -2.7078 -1.4406 10 7 6.8293 -2.9969 -2.8217 11 6 7.8971 -3.7817 -3.0676 12 8 8.5319 -4.2481 -2.1454 13 6 8.3021 -4.0796 -4.4881 14 6 9.5168 -4.9714 -4.4877 15 6 10.7755 -4.4245 -4.5915 16 6 11.8946 -5.2425 -4.5908 17 6 11.7604 -6.6185 -4.4864 18 6 10.5118 -7.1873 -4.3826 19 6 9.3689 -6.3661 -4.3752 20 6 8.0810 -6.9389 -4.2626 21 1 7.2677 -6.3616 -3.8484 22 6 7.8604 -8.2538 -4.6878 23 7 8.7294 -8.8436 -5.4678 24 14 6.3251 -9.1669 -4.1414 25 1 5.1208 -8.4326 -4.6063 26 1 6.3274 -10.5325 -4.7248 27 1 6.3061 -9.2610 -2.6596 28 7 2.2742 -1.0599 0.0005 29 1 -0.3633 -0.0001 1.0276 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3633 -0.8899 -0.5139 32 1 1.9923 2.1597 -0.0004 33 1 5.1330 1.8162 -1.0113 34 1 4.6058 2.5307 0.5313 35 1 5.6494 1.0888 0.5289 36 1 4.5561 -2.4333 0.5148 37 1 5.6091 -0.9983 0.5155 38 1 5.4358 -0.8696 -1.9547 39 1 4.3828 -2.3047 -1.9556 40 1 7.2544 -2.2057 -0.9261 41 1 6.2008 -3.6404 -0.9272 42 1 6.3213 -2.6242 -3.5591 43 1 7.4824 -4.5817 -5.0020 44 1 8.5365 -3.1474 -5.0022 45 1 10.8918 -3.3539 -4.6738 46 1 12.8785 -4.8046 -4.6731 47 1 12.6392 -7.2464 -4.4873 48 1 10.4095 -8.2594 -4.3018 49 1 8.5767 -9.7550 -5.7622 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776964367.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:31:20 Heat of formation + Delta-G solvation = 38.183694 kcal Electronic energy + Delta-G solvation = -28209.239773 eV Core-core repulsion = 24329.816293 eV Total energy + Delta-G solvation = -3879.423481 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.52629 -39.26729 -37.40269 -36.06415 -34.12512 -33.59757 -32.60768 -31.77805 -31.07671 -29.43552 -28.68539 -27.29665 -26.82262 -25.21245 -24.50559 -22.12682 -20.91987 -20.70452 -20.53292 -19.51284 -19.22697 -17.17651 -16.97734 -16.37996 -15.93179 -15.63815 -15.48958 -15.24234 -14.65398 -14.42505 -14.12630 -14.01311 -13.65715 -13.57291 -13.37312 -13.26891 -13.22445 -12.98262 -12.78157 -12.57045 -12.39809 -12.16548 -12.15082 -11.81387 -11.67916 -11.54049 -11.31738 -11.12674 -10.97464 -10.94863 -10.70990 -10.66941 -10.38617 -9.46648 -9.36227 -9.33255 -9.17057 -9.12724 -8.76373 -8.71991 -7.29017 -7.27051 -6.71218 -4.32116 1.61353 2.20155 2.53762 2.82059 2.99499 3.07767 3.11446 3.29943 3.33260 3.61603 3.95667 4.18243 4.30238 4.57601 4.64792 4.66953 4.70442 4.80219 4.94988 5.06232 5.12722 5.15124 5.33866 5.38722 5.40127 5.45035 5.55076 5.57511 5.64582 5.79034 5.81249 5.90154 5.97226 6.04665 6.17219 6.30163 6.44773 6.46711 6.53029 6.71797 6.80663 6.82215 7.11064 7.31933 7.44648 7.54191 7.66108 7.87305 7.96430 8.09664 8.15314 8.33906 8.67052 8.84614 8.94068 9.03943 10.22882 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.013090 B = 0.002239 C = 0.001964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2138.599272 B =12504.995224 C =14251.610790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.069 3.931 3 C -0.276 4.276 4 C 0.085 3.915 5 C -0.094 4.094 6 N -0.367 5.367 7 C 0.135 3.865 8 C -0.146 4.146 9 C 0.125 3.875 10 N -0.746 5.746 11 C 0.515 3.485 12 O -0.520 6.520 13 C -0.070 4.070 14 C -0.182 4.182 15 C -0.081 4.081 16 C -0.240 4.240 17 C -0.107 4.107 18 C -0.159 4.159 19 C 0.129 3.871 20 C -0.456 4.456 21 H 0.073 0.927 22 C 0.077 3.923 23 N -0.795 5.795 24 Si 0.903 3.097 25 H -0.266 1.266 26 H -0.278 1.278 27 H -0.264 1.264 28 N -0.294 5.294 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.144 0.856 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.071 0.929 36 H 0.100 0.900 37 H 0.096 0.904 38 H 0.074 0.926 39 H 0.080 0.920 40 H 0.065 0.935 41 H 0.068 0.932 42 H 0.396 0.604 43 H 0.096 0.904 44 H 0.075 0.925 45 H 0.084 0.916 46 H 0.085 0.915 47 H 0.086 0.914 48 H 0.117 0.883 49 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.175 18.365 7.643 23.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.097 4.097 3 C -0.305 4.305 4 C -0.042 4.042 5 C -0.152 4.152 6 N -0.149 5.149 7 C 0.013 3.987 8 C -0.184 4.184 9 C 0.000 4.000 10 N -0.401 5.401 11 C 0.302 3.698 12 O -0.393 6.393 13 C -0.110 4.110 14 C -0.184 4.184 15 C -0.100 4.100 16 C -0.259 4.259 17 C -0.126 4.126 18 C -0.178 4.178 19 C 0.126 3.874 20 C -0.486 4.486 21 H 0.091 0.909 22 C -0.140 4.140 23 N -0.421 5.421 24 Si 0.728 3.272 25 H -0.191 1.191 26 H -0.203 1.203 27 H -0.189 1.189 28 N -0.117 5.117 29 H 0.093 0.907 30 H 0.095 0.905 31 H 0.090 0.910 32 H 0.162 0.838 33 H 0.100 0.900 34 H 0.103 0.897 35 H 0.090 0.910 36 H 0.118 0.882 37 H 0.114 0.886 38 H 0.092 0.908 39 H 0.098 0.902 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.230 0.770 43 H 0.114 0.886 44 H 0.094 0.906 45 H 0.102 0.898 46 H 0.103 0.897 47 H 0.104 0.896 48 H 0.135 0.865 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -11.487 16.407 8.201 21.643 hybrid contribution -0.898 0.552 -0.148 1.065 sum -12.386 16.959 8.053 22.492 Atomic orbital electron populations 1.20160 0.86799 1.03233 1.02833 1.22327 0.96928 0.90851 0.99597 1.21095 0.90983 0.99673 1.18797 1.21133 0.97354 0.84755 1.00963 1.20480 0.93046 0.98184 1.03519 1.48571 1.05313 1.03997 1.56997 1.21604 0.83855 0.95303 0.97961 1.22164 0.98878 1.00951 0.96454 1.21054 0.95082 0.98793 0.85058 1.46100 1.32663 1.53895 1.07469 1.21264 0.78862 0.76715 0.92923 1.90684 1.52660 1.49481 1.46501 1.20260 0.99487 0.99345 0.91921 1.19053 0.91503 0.93734 1.14072 1.20294 0.92746 0.96601 1.00320 1.20304 0.96176 0.93818 1.15645 1.20674 0.96522 0.94243 1.01116 1.21295 0.91123 0.99863 1.05551 1.17339 0.93210 0.89900 0.86922 1.19431 0.95796 0.96991 1.36385 0.90876 1.25873 0.97875 0.97592 0.92700 1.69810 1.34885 1.13518 1.23893 0.86455 0.81899 0.78606 0.80287 1.19091 1.20329 1.18884 1.77372 0.86279 1.22635 1.25393 0.90662 0.90538 0.90960 0.83796 0.90045 0.89673 0.90984 0.88194 0.88563 0.90777 0.90175 0.91643 0.91373 0.77041 0.88568 0.90632 0.89803 0.89682 0.89595 0.86521 0.90921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.52 10.45 36.01 0.38 -0.14 16 2 C 0.07 0.74 7.22 -82.40 -0.59 0.14 16 3 C -0.28 -2.63 10.65 -40.01 -0.43 -3.05 16 4 C 0.09 0.79 6.93 -82.26 -0.57 0.22 16 5 C -0.09 -0.54 10.12 36.01 0.36 -0.17 16 6 N -0.37 -3.93 3.61 -57.14 -0.21 -4.14 16 7 C 0.13 1.18 6.25 -4.04 -0.03 1.15 16 8 C -0.15 -1.33 5.65 -26.73 -0.15 -1.48 16 9 C 0.13 1.48 5.67 -4.04 -0.02 1.46 16 10 N -0.75 -10.41 5.56 -60.29 -0.33 -10.74 16 11 C 0.51 9.86 7.44 -10.99 -0.08 9.78 16 12 O -0.52 -12.33 16.03 5.56 0.09 -12.24 16 13 C -0.07 -1.37 5.18 -29.04 -0.15 -1.52 16 14 C -0.18 -4.40 4.43 -103.92 -0.46 -4.86 16 15 C -0.08 -1.89 9.66 -39.66 -0.38 -2.27 16 16 C -0.24 -5.63 10.05 -39.29 -0.39 -6.03 16 17 C -0.11 -2.64 10.02 -39.66 -0.40 -3.03 16 18 C -0.16 -4.29 8.69 -38.87 -0.34 -4.63 16 19 C 0.13 3.47 5.56 -106.82 -0.59 2.87 16 20 C -0.46 -12.10 8.14 -37.74 -0.31 -12.41 16 21 H 0.07 1.89 6.67 -52.49 -0.35 1.54 16 22 C 0.08 1.95 5.16 -17.34 -0.09 1.86 16 23 N -0.80 -20.71 10.95 55.55 0.61 -20.10 16 24 Si 0.90 19.14 29.59 -169.99 -5.03 14.11 16 25 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 26 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 27 H -0.26 -5.69 7.11 56.52 0.40 -5.29 16 28 N -0.29 -3.75 12.58 33.67 0.42 -3.33 16 29 H 0.07 0.46 8.14 -51.94 -0.42 0.04 16 30 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.14 1.04 8.06 -52.49 -0.42 0.61 16 33 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.07 0.36 7.08 -51.93 -0.37 -0.01 16 36 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.10 0.63 7.04 -51.93 -0.37 0.27 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.40 4.36 8.47 -40.82 -0.35 4.02 16 43 H 0.10 1.85 7.08 -51.93 -0.37 1.48 16 44 H 0.08 1.22 8.05 -51.93 -0.42 0.80 16 45 H 0.08 1.70 8.06 -52.48 -0.42 1.28 16 46 H 0.08 1.76 8.06 -52.48 -0.42 1.34 16 47 H 0.09 1.89 8.06 -52.48 -0.42 1.47 16 48 H 0.12 3.23 6.20 -52.49 -0.33 2.91 16 49 H 0.28 6.67 8.30 -40.82 -0.34 6.33 16 LS Contribution 409.45 15.07 6.17 6.17 Total: -1.00 -33.92 409.45 -10.12 -44.04 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: -7.59 Total: 8.32 kcal Atomic # 6 Polarization: -17.85 SS G_CDS: -4.25 Total: -22.09 kcal Atomic # 7 Polarization: -38.80 SS G_CDS: 0.49 Total: -38.31 kcal Atomic # 8 Polarization: -12.33 SS G_CDS: 0.09 Total: -12.24 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.03 Total: 14.11 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -33.92 -10.12 -44.04 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776964367.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.228 kcal (2) G-P(sol) polarization free energy of solvation -33.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.044 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds