Wall clock time and date at job start Wed Apr 1 2020 00:31:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.39867 * 125.89783 * 2 1 4 4 C 1.35315 * 107.91771 * 179.71707 * 3 2 1 5 5 C 1.50706 * 126.12503 * 180.26878 * 4 3 2 6 6 N 1.34949 * 107.74991 * 0.42542 * 4 3 2 7 7 C 1.46497 * 126.03930 * 179.83990 * 6 4 3 8 8 C 1.53003 * 109.46949 * 269.71598 * 7 6 4 9 9 C 1.53000 * 109.46847 * 180.02562 * 8 7 6 10 10 N 1.46509 * 109.46875 * 179.97438 * 9 8 7 11 11 C 1.34777 * 119.99894 * 180.02562 * 10 9 8 12 12 O 1.21282 * 119.99852 * 359.97438 * 11 10 9 13 13 C 1.50690 * 120.00015 * 179.97438 * 11 10 9 14 14 C 1.50694 * 109.47500 * 179.97438 * 13 11 10 15 15 C 1.37634 * 120.12933 * 265.00250 * 14 13 11 16 16 C 1.38620 * 120.25163 * 179.97438 * 15 14 13 17 17 C 1.38651 * 120.49721 * 0.02562 * 16 15 14 18 18 C 1.37598 * 120.25296 * 0.02562 * 17 16 15 19 19 C 1.40701 * 120.13012 * 84.72168 * 14 13 11 20 20 C 1.41401 * 120.24092 * 0.02562 * 19 14 13 21 21 H 1.07997 * 119.99518 * 333.89100 * 20 19 14 22 22 C 1.39942 * 120.00096 * 153.89106 * 20 19 14 23 23 N 1.30824 * 120.00023 * 343.71760 * 22 20 19 24 24 Si 1.86802 * 119.99943 * 163.71352 * 22 20 19 25 25 H 1.48505 * 109.46757 * 60.00195 * 24 22 20 26 26 H 1.48500 * 109.47077 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.47229 * 300.00517 * 24 22 20 28 28 N 1.30838 * 125.89741 * 179.97438 * 2 1 3 29 29 H 1.08989 * 109.46975 * 269.99619 * 1 2 3 30 30 H 1.09001 * 109.46771 * 29.99871 * 1 2 3 31 31 H 1.08999 * 109.47049 * 149.99650 * 1 2 3 32 32 H 1.07996 * 126.03972 * 359.97438 * 3 2 1 33 33 H 1.09001 * 109.46835 * 270.18288 * 5 4 3 34 34 H 1.08993 * 109.47560 * 30.18549 * 5 4 3 35 35 H 1.09000 * 109.47203 * 150.19210 * 5 4 3 36 36 H 1.09000 * 109.46907 * 149.71519 * 7 6 4 37 37 H 1.08994 * 109.47239 * 29.71489 * 7 6 4 38 38 H 1.09000 * 109.47381 * 60.00211 * 8 7 6 39 39 H 1.09004 * 109.47266 * 299.99953 * 8 7 6 40 40 H 1.08994 * 109.47215 * 299.99813 * 9 8 7 41 41 H 1.09002 * 109.46969 * 60.00449 * 9 8 7 42 42 H 0.96991 * 119.99763 * 359.97438 * 10 9 8 43 43 H 1.09004 * 109.47240 * 299.99900 * 13 11 10 44 44 H 1.09000 * 109.47257 * 60.00067 * 13 11 10 45 45 H 1.08005 * 119.87596 * 359.97438 * 15 14 13 46 46 H 1.08003 * 119.74924 * 179.97438 * 16 15 14 47 47 H 1.08003 * 119.87445 * 179.97438 * 17 16 15 48 48 H 1.07996 * 120.12709 * 179.97438 * 18 17 16 49 49 H 0.96993 * 119.99888 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3271 1.1330 0.0000 4 6 3.6142 0.7153 0.0064 5 6 4.8350 1.5989 0.0144 6 7 3.6088 -0.6341 0.0007 7 6 4.7900 -1.5008 0.0012 8 6 5.2019 -1.8022 -1.4411 9 6 6.4351 -2.7078 -1.4406 10 7 6.8293 -2.9969 -2.8217 11 6 7.8971 -3.7817 -3.0676 12 8 8.5319 -4.2481 -2.1454 13 6 8.3021 -4.0796 -4.4881 14 6 9.5168 -4.9714 -4.4877 15 6 10.7755 -4.4245 -4.5915 16 6 11.8946 -5.2425 -4.5908 17 6 11.7604 -6.6185 -4.4864 18 6 10.5118 -7.1873 -4.3826 19 6 9.3689 -6.3661 -4.3752 20 6 8.0810 -6.9389 -4.2626 21 1 7.2677 -6.3616 -3.8484 22 6 7.8604 -8.2538 -4.6878 23 7 8.7294 -8.8436 -5.4678 24 14 6.3251 -9.1669 -4.1414 25 1 5.1208 -8.4326 -4.6063 26 1 6.3274 -10.5325 -4.7248 27 1 6.3061 -9.2610 -2.6596 28 7 2.2742 -1.0599 0.0005 29 1 -0.3633 -0.0001 1.0276 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3633 -0.8899 -0.5139 32 1 1.9923 2.1597 -0.0004 33 1 5.1330 1.8162 -1.0113 34 1 4.6058 2.5307 0.5313 35 1 5.6494 1.0888 0.5289 36 1 4.5561 -2.4333 0.5148 37 1 5.6091 -0.9983 0.5155 38 1 5.4358 -0.8696 -1.9547 39 1 4.3828 -2.3047 -1.9556 40 1 7.2544 -2.2057 -0.9261 41 1 6.2008 -3.6404 -0.9272 42 1 6.3213 -2.6242 -3.5591 43 1 7.4824 -4.5817 -5.0020 44 1 8.5365 -3.1474 -5.0022 45 1 10.8918 -3.3539 -4.6738 46 1 12.8785 -4.8046 -4.6731 47 1 12.6392 -7.2464 -4.4873 48 1 10.4095 -8.2594 -4.3018 49 1 8.5767 -9.7550 -5.7622 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776964367.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:31:18 Heat of formation + Delta-G solvation = 18.254477 kcal Electronic energy + Delta-G solvation = -28210.103969 eV Core-core repulsion = 24329.816293 eV Total energy + Delta-G solvation = -3880.287676 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.22746 -40.77932 -39.15774 -37.08712 -35.50265 -35.11627 -33.58707 -33.16564 -31.95913 -31.33501 -29.60573 -28.34452 -27.85284 -26.92682 -25.59909 -23.02049 -22.81524 -22.14493 -21.34538 -20.91786 -20.14335 -19.07164 -17.87741 -17.71541 -17.30260 -16.87260 -16.67178 -16.27412 -16.09797 -15.98741 -15.34280 -15.14197 -14.79093 -14.58389 -14.51415 -14.36594 -14.19750 -13.91526 -13.81737 -13.50772 -13.43310 -13.37123 -13.21123 -12.93264 -12.85157 -12.78976 -12.76024 -12.63321 -12.54674 -12.47934 -12.13172 -12.02371 -11.42676 -11.32062 -11.21319 -11.03638 -10.79685 -10.03451 -10.02660 -9.42746 -9.22280 -9.15730 -8.60044 -6.29703 0.90434 0.99850 1.13898 1.33984 1.43713 1.51991 1.53004 1.83715 1.83903 2.18199 2.38675 2.78438 3.52077 3.71662 3.74408 3.85334 3.91703 3.95057 4.16428 4.20320 4.27729 4.37963 4.41647 4.47567 4.55509 4.62303 4.63122 4.72183 4.75372 4.78833 4.81462 4.81849 4.87933 4.99010 5.00625 5.06861 5.08652 5.13791 5.19781 5.35832 5.37290 5.52348 5.55473 5.77864 5.79555 6.04118 6.15631 6.17007 6.22006 6.42281 6.64678 6.75151 6.81575 6.99095 7.11614 7.43859 8.36159 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.013090 B = 0.002239 C = 0.001964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2138.599272 B =12504.995224 C =14251.610790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.057 3.943 3 C -0.291 4.291 4 C 0.084 3.916 5 C -0.093 4.093 6 N -0.376 5.376 7 C 0.132 3.868 8 C -0.125 4.125 9 C 0.127 3.873 10 N -0.726 5.726 11 C 0.517 3.483 12 O -0.573 6.573 13 C -0.070 4.070 14 C -0.188 4.188 15 C -0.091 4.091 16 C -0.242 4.242 17 C -0.118 4.118 18 C -0.194 4.194 19 C 0.094 3.906 20 C -0.482 4.482 21 H 0.070 0.930 22 C 0.036 3.964 23 N -0.826 5.826 24 Si 0.969 3.031 25 H -0.255 1.255 26 H -0.266 1.266 27 H -0.271 1.271 28 N -0.344 5.344 29 H 0.084 0.916 30 H 0.096 0.904 31 H 0.066 0.934 32 H 0.165 0.835 33 H 0.092 0.908 34 H 0.100 0.900 35 H 0.080 0.920 36 H 0.090 0.910 37 H 0.122 0.878 38 H 0.091 0.909 39 H 0.066 0.934 40 H 0.072 0.928 41 H 0.050 0.950 42 H 0.413 0.587 43 H 0.095 0.905 44 H 0.115 0.885 45 H 0.119 0.881 46 H 0.116 0.884 47 H 0.105 0.895 48 H 0.096 0.904 49 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.875 21.191 7.643 25.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.109 4.109 3 C -0.320 4.320 4 C -0.044 4.044 5 C -0.151 4.151 6 N -0.159 5.159 7 C 0.011 3.989 8 C -0.164 4.164 9 C 0.002 3.998 10 N -0.380 5.380 11 C 0.305 3.695 12 O -0.452 6.452 13 C -0.110 4.110 14 C -0.190 4.190 15 C -0.109 4.109 16 C -0.261 4.261 17 C -0.136 4.136 18 C -0.213 4.213 19 C 0.092 3.908 20 C -0.512 4.512 21 H 0.088 0.912 22 C -0.178 4.178 23 N -0.452 5.452 24 Si 0.790 3.210 25 H -0.179 1.179 26 H -0.190 1.190 27 H -0.196 1.196 28 N -0.167 5.167 29 H 0.103 0.897 30 H 0.115 0.885 31 H 0.085 0.915 32 H 0.182 0.818 33 H 0.110 0.890 34 H 0.119 0.881 35 H 0.099 0.901 36 H 0.109 0.891 37 H 0.140 0.860 38 H 0.109 0.891 39 H 0.085 0.915 40 H 0.091 0.909 41 H 0.068 0.932 42 H 0.250 0.750 43 H 0.113 0.887 44 H 0.133 0.867 45 H 0.137 0.863 46 H 0.134 0.866 47 H 0.123 0.877 48 H 0.114 0.886 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -12.227 19.275 8.173 24.245 hybrid contribution -0.621 -0.196 -0.145 0.667 sum -12.848 19.079 8.028 24.362 Atomic orbital electron populations 1.20266 0.85039 1.03931 1.03663 1.22920 0.98330 0.90970 0.98640 1.21458 0.91112 1.00383 1.19064 1.21762 0.98674 0.84475 0.99458 1.20619 0.91722 0.98183 1.04536 1.48689 1.04979 1.04779 1.57427 1.21680 0.84212 0.95368 0.97665 1.21948 0.96791 1.00695 0.96970 1.21125 0.96490 0.98663 0.83516 1.45868 1.30948 1.52004 1.09193 1.21108 0.79535 0.76789 0.92059 1.90668 1.54854 1.51929 1.47703 1.20282 0.97712 1.00211 0.92776 1.19560 0.93871 0.93467 1.12073 1.20748 0.92268 0.98488 0.99392 1.20736 0.97943 0.93335 1.14110 1.20949 0.96354 0.95494 1.00800 1.21303 0.92593 0.99197 1.08254 1.17748 0.93449 0.91609 0.88000 1.19575 0.95839 0.98151 1.37656 0.91186 1.26639 1.00873 0.97983 0.92316 1.69871 1.36620 1.14035 1.24721 0.85456 0.78475 0.77877 0.79166 1.17907 1.19038 1.19629 1.77307 0.87573 1.24263 1.27593 0.89694 0.88529 0.91528 0.81786 0.88981 0.88088 0.90086 0.89114 0.86048 0.89084 0.91529 0.90926 0.93180 0.75026 0.88690 0.86736 0.86340 0.86602 0.87720 0.88610 0.90376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.95 10.45 71.24 0.74 -0.21 16 2 C 0.06 1.18 7.22 43.10 0.31 1.49 16 3 C -0.29 -5.04 10.65 21.99 0.23 -4.81 16 4 C 0.08 1.38 6.93 41.41 0.29 1.67 16 5 C -0.09 -0.77 10.12 71.24 0.72 -0.05 16 6 N -0.38 -7.65 3.61 -334.70 -1.21 -8.85 16 7 C 0.13 2.13 6.25 86.38 0.54 2.67 16 8 C -0.13 -2.06 5.65 30.60 0.17 -1.89 16 9 C 0.13 2.84 5.67 86.38 0.49 3.33 16 10 N -0.73 -18.99 5.56 -463.05 -2.57 -21.57 16 11 C 0.52 19.32 7.44 87.65 0.65 19.98 16 12 O -0.57 -27.35 16.03 -3.04 -0.05 -27.40 16 13 C -0.07 -2.64 5.18 29.10 0.15 -2.49 16 14 C -0.19 -9.03 4.43 -19.41 -0.09 -9.12 16 15 C -0.09 -4.06 9.66 22.22 0.21 -3.85 16 16 C -0.24 -11.01 10.05 22.46 0.23 -10.79 16 17 C -0.12 -5.84 10.02 22.22 0.22 -5.61 16 18 C -0.19 -10.85 8.69 22.73 0.20 -10.65 16 19 C 0.09 5.21 5.56 -21.29 -0.12 5.09 16 20 C -0.48 -26.36 8.14 23.46 0.19 -26.17 16 21 H 0.07 3.72 6.67 -2.91 -0.02 3.70 16 22 C 0.04 1.89 5.16 85.26 0.44 2.33 16 23 N -0.83 -44.42 10.95 21.83 0.24 -44.18 16 24 Si 0.97 39.97 29.59 68.60 2.03 42.00 16 25 H -0.26 -9.96 7.11 99.48 0.71 -9.26 16 26 H -0.27 -10.34 7.11 99.48 0.71 -9.63 16 27 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 28 N -0.34 -8.72 12.58 -47.38 -0.60 -9.31 16 29 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.16 1.98 8.06 -2.91 -0.02 1.95 16 33 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.10 0.53 8.14 -2.39 -0.02 0.52 16 35 H 0.08 0.54 7.08 -2.39 -0.02 0.52 16 36 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.12 1.31 7.04 -2.39 -0.02 1.29 16 38 H 0.09 1.22 8.14 -2.39 -0.02 1.21 16 39 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.41 8.06 8.47 -92.71 -0.79 7.27 16 43 H 0.09 3.59 7.08 -2.39 -0.02 3.57 16 44 H 0.11 3.33 8.05 -2.39 -0.02 3.31 16 45 H 0.12 4.39 8.06 -2.91 -0.02 4.37 16 46 H 0.12 4.47 8.06 -2.91 -0.02 4.45 16 47 H 0.10 4.62 8.06 -2.91 -0.02 4.59 16 48 H 0.10 5.61 6.20 -2.91 -0.02 5.60 16 49 H 0.29 14.00 8.30 -92.71 -0.77 13.23 16 Total: -1.00 -76.89 409.45 3.60 -73.28 By element: Atomic # 1 Polarization: 34.94 SS G_CDS: 0.17 Total: 35.11 kcal Atomic # 6 Polarization: -44.67 SS G_CDS: 5.59 Total: -39.08 kcal Atomic # 7 Polarization: -79.78 SS G_CDS: -4.14 Total: -83.91 kcal Atomic # 8 Polarization: -27.35 SS G_CDS: -0.05 Total: -27.40 kcal Atomic # 14 Polarization: 39.97 SS G_CDS: 2.03 Total: 42.00 kcal Total: -76.89 3.60 -73.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776964367.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.537 kcal (2) G-P(sol) polarization free energy of solvation -76.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.282 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds