Wall clock time and date at job start Wed Apr 1 2020 00:49:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30498 * 125.65504 * 2 1 4 4 C 1.34128 * 109.25994 * 180.02562 * 3 2 1 5 5 C 1.34671 * 108.01870 * 359.73127 * 4 3 2 6 6 N 1.35044 * 125.64874 * 180.02562 * 2 1 3 7 7 C 1.46501 * 126.39864 * 359.96314 * 6 2 1 8 8 C 1.53003 * 109.46806 * 85.00129 * 7 6 2 9 9 H 1.08996 * 109.47067 * 304.99758 * 8 7 6 10 10 C 1.53000 * 109.47172 * 65.00208 * 8 7 6 11 11 C 1.53005 * 109.47061 * 185.00214 * 8 7 6 12 12 N 1.46497 * 109.47213 * 174.99895 * 11 8 7 13 13 C 1.34779 * 119.99954 * 180.02562 * 12 11 8 14 14 O 1.21272 * 119.99784 * 359.97438 * 13 12 11 15 15 C 1.50703 * 119.99807 * 180.02562 * 13 12 11 16 16 C 1.50693 * 109.46712 * 179.97438 * 15 13 12 17 17 C 1.37638 * 120.12795 * 264.99121 * 16 15 13 18 18 C 1.38608 * 120.25136 * 179.97438 * 17 16 15 19 19 C 1.38653 * 120.50299 * 0.02562 * 18 17 16 20 20 C 1.37605 * 120.24698 * 0.02562 * 19 18 17 21 21 C 1.40699 * 120.13117 * 84.72666 * 16 15 13 22 22 C 1.41394 * 120.24103 * 359.97438 * 21 16 15 23 23 H 1.08001 * 120.00215 * 333.89773 * 22 21 16 24 24 C 1.39942 * 119.99947 * 153.89829 * 22 21 16 25 25 N 1.30830 * 120.00165 * 343.71894 * 24 22 21 26 26 Si 1.86802 * 120.00132 * 163.71775 * 24 22 21 27 27 H 1.48504 * 109.47144 * 60.00255 * 26 24 22 28 28 H 1.48504 * 109.46935 * 179.97438 * 26 24 22 29 29 H 1.48498 * 109.47249 * 299.99788 * 26 24 22 30 30 H 1.08995 * 109.46910 * 269.96360 * 1 2 3 31 31 H 1.09005 * 109.46875 * 29.95671 * 1 2 3 32 32 H 1.08992 * 109.47125 * 149.95711 * 1 2 3 33 33 H 1.07996 * 125.98864 * 180.02562 * 4 3 2 34 34 H 1.07996 * 126.59208 * 180.27558 * 5 4 3 35 35 H 1.08997 * 109.47047 * 325.00394 * 7 6 2 36 36 H 1.08996 * 109.47720 * 205.00238 * 7 6 2 37 37 H 1.09000 * 109.46986 * 179.97438 * 10 8 7 38 38 H 1.08995 * 109.46761 * 300.00160 * 10 8 7 39 39 H 1.09007 * 109.46778 * 59.99994 * 10 8 7 40 40 H 1.08998 * 109.47096 * 295.00274 * 11 8 7 41 41 H 1.09002 * 109.46873 * 55.00061 * 11 8 7 42 42 H 0.96999 * 119.99768 * 359.97438 * 12 11 8 43 43 H 1.09005 * 109.46458 * 299.99703 * 15 13 12 44 44 H 1.08994 * 109.47097 * 59.99426 * 15 13 12 45 45 H 1.08004 * 119.87533 * 0.02562 * 17 16 15 46 46 H 1.08004 * 119.75401 * 180.02562 * 18 17 16 47 47 H 1.08002 * 119.88393 * 179.97438 * 19 18 17 48 48 H 1.08000 * 120.12775 * 179.97438 * 20 19 18 49 49 H 0.96994 * 120.00072 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2677 1.0604 0.0000 4 6 3.5544 0.6818 -0.0006 5 6 3.5926 -0.6644 0.0051 6 7 2.2940 -1.0974 -0.0005 7 6 1.8425 -2.4911 -0.0004 8 6 1.5650 -2.9373 -1.4373 9 1 0.8562 -2.2509 -1.9005 10 6 2.8716 -2.9353 -2.2333 11 6 0.9756 -4.3493 -1.4280 12 7 0.5993 -4.7303 -2.7916 13 6 0.0548 -5.9406 -3.0271 14 8 -0.1231 -6.7142 -2.1103 15 6 -0.3317 -6.3327 -4.4299 16 6 -0.9123 -7.7233 -4.4207 17 6 -0.1102 -8.8087 -4.6909 18 6 -0.6414 -10.0889 -4.6826 19 6 -1.9842 -10.2919 -4.4032 20 6 -2.8051 -9.2215 -4.1312 21 6 -2.2752 -7.9178 -4.1303 22 6 -3.1075 -6.8109 -3.8452 23 1 -2.6817 -5.9057 -3.4382 24 6 -4.4831 -6.8883 -4.0903 25 7 -4.9580 -7.8319 -4.8623 26 14 -5.6415 -5.6446 -3.3152 27 1 -5.2734 -4.2780 -3.7650 28 1 -7.0363 -5.9424 -3.7289 29 1 -5.5357 -5.7243 -1.8361 30 1 -0.3633 -0.0007 1.0276 31 1 -0.3633 0.8904 -0.5132 32 1 -0.3633 -0.8895 -0.5145 33 1 4.4099 1.3409 -0.0003 34 1 4.4776 -1.2833 0.0104 35 1 0.9300 -2.5772 0.5895 36 1 2.6166 -3.1239 0.4335 37 1 2.6740 -3.2536 -3.2569 38 1 3.2914 -1.9294 -2.2399 39 1 3.5803 -3.6218 -1.7701 40 1 1.7180 -5.0503 -1.0466 41 1 0.0934 -4.3705 -0.7883 42 1 0.7413 -4.1113 -3.5248 43 1 -1.0736 -5.6313 -4.8118 44 1 0.5508 -6.3120 -5.0692 45 1 0.9373 -8.6623 -4.9095 46 1 -0.0045 -10.9348 -4.8954 47 1 -2.3877 -11.2937 -4.3998 48 1 -3.8509 -9.3818 -3.9142 49 1 -5.9115 -7.8858 -5.0319 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777363977.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:49:38 Heat of formation + Delta-G solvation = 27.053352 kcal Electronic energy + Delta-G solvation = -28926.381066 eV Core-core repulsion = 25046.474937 eV Total energy + Delta-G solvation = -3879.906129 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.38110 -39.40881 -37.63594 -36.82168 -34.06980 -33.62432 -32.06281 -31.98704 -31.41658 -29.45808 -27.66324 -27.40798 -26.74594 -25.57038 -24.71831 -21.63299 -21.24074 -20.93678 -20.60288 -19.80668 -19.27806 -17.41850 -17.17376 -16.57824 -15.97282 -15.68343 -15.63194 -15.24203 -14.82211 -14.49467 -14.35660 -13.96541 -13.91483 -13.57469 -13.40917 -13.29535 -13.13095 -12.90151 -12.84089 -12.62380 -12.58748 -12.46133 -11.87234 -11.73300 -11.57171 -11.42693 -11.29394 -11.16621 -11.01564 -10.98466 -10.69833 -10.41572 -10.17672 -9.85823 -9.49269 -9.38984 -9.22071 -9.15820 -8.80529 -8.56840 -7.31606 -7.29721 -6.73907 -4.34991 1.78666 2.45769 2.79200 2.93034 2.96815 3.05054 3.07518 3.26919 3.29463 3.57545 3.92328 4.15677 4.24760 4.36999 4.43140 4.61680 4.65961 4.78506 4.91650 5.03036 5.13979 5.22458 5.25484 5.35935 5.43276 5.50834 5.55018 5.61382 5.64968 5.76686 5.83635 5.85979 6.00995 6.07600 6.13646 6.27753 6.41819 6.50664 6.53262 6.68222 6.79556 6.93855 7.08106 7.29296 7.42065 7.63236 7.82998 7.89056 7.93491 8.06573 8.12831 8.31106 8.64138 8.80680 8.91140 9.01271 10.20259 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.013138 B = 0.002575 C = 0.002222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2130.785098 B =10872.131432 C =12596.644849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.207 3.793 3 N -0.495 5.495 4 C -0.032 4.032 5 C -0.056 4.056 6 N -0.450 5.450 7 C 0.109 3.891 8 C -0.119 4.119 9 H 0.085 0.915 10 C -0.149 4.149 11 C 0.129 3.871 12 N -0.745 5.745 13 C 0.515 3.485 14 O -0.519 6.519 15 C -0.070 4.070 16 C -0.182 4.182 17 C -0.081 4.081 18 C -0.240 4.240 19 C -0.107 4.107 20 C -0.159 4.159 21 C 0.129 3.871 22 C -0.457 4.457 23 H 0.073 0.927 24 C 0.077 3.923 25 N -0.795 5.795 26 Si 0.903 3.097 27 H -0.266 1.266 28 H -0.278 1.278 29 H -0.264 1.264 30 H 0.080 0.920 31 H 0.090 0.910 32 H 0.075 0.925 33 H 0.167 0.833 34 H 0.172 0.828 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.063 0.937 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.066 0.934 41 H 0.067 0.933 42 H 0.396 0.604 43 H 0.096 0.904 44 H 0.075 0.925 45 H 0.084 0.916 46 H 0.085 0.915 47 H 0.086 0.914 48 H 0.117 0.883 49 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.966 12.778 6.203 18.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.055 4.055 3 N -0.214 5.214 4 C -0.180 4.180 5 C -0.189 4.189 6 N -0.133 5.133 7 C -0.014 4.014 8 C -0.138 4.138 9 H 0.103 0.897 10 C -0.206 4.206 11 C 0.004 3.996 12 N -0.400 5.400 13 C 0.303 3.697 14 O -0.393 6.393 15 C -0.110 4.110 16 C -0.184 4.184 17 C -0.100 4.100 18 C -0.259 4.259 19 C -0.125 4.125 20 C -0.179 4.179 21 C 0.127 3.873 22 C -0.486 4.486 23 H 0.091 0.909 24 C -0.141 4.141 25 N -0.421 5.421 26 Si 0.728 3.272 27 H -0.191 1.191 28 H -0.203 1.203 29 H -0.189 1.189 30 H 0.098 0.902 31 H 0.108 0.892 32 H 0.094 0.906 33 H 0.185 0.815 34 H 0.189 0.811 35 H 0.115 0.885 36 H 0.116 0.884 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.230 0.770 43 H 0.114 0.886 44 H 0.093 0.907 45 H 0.102 0.898 46 H 0.103 0.897 47 H 0.104 0.896 48 H 0.135 0.865 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 11.273 12.761 6.780 18.328 hybrid contribution -0.034 -0.061 -0.023 0.074 sum 11.239 12.700 6.757 18.256 Atomic orbital electron populations 1.20232 0.85010 1.04258 1.03590 1.23322 0.95724 0.81368 1.05128 1.70252 1.02295 1.28385 1.20508 1.22266 0.94781 0.92809 1.08095 1.22668 0.87095 0.96796 1.12321 1.45388 1.06458 1.07220 1.54217 1.21891 1.02430 0.79309 0.97792 1.21750 0.99180 0.97618 0.95273 0.89653 1.21873 0.96122 1.02129 1.00522 1.21108 0.99718 0.93145 0.85605 1.46105 1.66564 1.18417 1.08915 1.21263 0.75731 0.80158 0.92585 1.90684 1.51797 1.50723 1.46073 1.20258 1.00610 0.98220 0.91907 1.19048 0.95266 0.91297 1.12765 1.20293 0.96506 0.92946 1.00211 1.20307 0.95465 0.95388 1.14762 1.20680 0.93886 0.97188 1.00794 1.21302 0.99486 0.91815 1.05262 1.17332 0.90206 0.92772 0.87032 1.19420 0.91439 1.00115 1.37656 0.90883 1.25879 0.99182 0.96053 0.92955 1.69811 1.15360 1.30230 1.26689 0.86453 0.78869 0.81123 0.80775 1.19093 1.20326 1.18907 0.90176 0.89158 0.90602 0.81540 0.81099 0.88470 0.88432 0.91780 0.92223 0.92201 0.91551 0.91454 0.77040 0.88580 0.90659 0.89813 0.89678 0.89584 0.86519 0.90901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.56 10.04 36.01 0.36 -0.20 16 2 C 0.21 2.13 7.90 -155.42 -1.23 0.90 16 3 N -0.50 -6.09 11.25 -10.82 -0.12 -6.22 16 4 C -0.03 -0.32 11.87 -17.81 -0.21 -0.53 16 5 C -0.06 -0.47 10.28 -16.56 -0.17 -0.64 16 6 N -0.45 -3.89 2.47 -113.91 -0.28 -4.17 16 7 C 0.11 0.74 5.08 -4.04 -0.02 0.72 16 8 C -0.12 -0.90 2.63 -90.61 -0.24 -1.14 16 9 H 0.09 0.69 7.74 -51.93 -0.40 0.29 16 10 C -0.15 -1.10 8.82 37.16 0.33 -0.77 16 11 C 0.13 1.38 5.06 -4.04 -0.02 1.36 16 12 N -0.74 -9.59 5.28 -60.29 -0.32 -9.91 16 13 C 0.52 9.43 7.44 -10.98 -0.08 9.35 16 14 O -0.52 -11.91 16.03 5.56 0.09 -11.82 16 15 C -0.07 -1.32 5.18 -29.04 -0.15 -1.47 16 16 C -0.18 -4.31 4.43 -103.92 -0.46 -4.77 16 17 C -0.08 -1.86 9.66 -39.66 -0.38 -2.24 16 18 C -0.24 -5.56 10.05 -39.29 -0.39 -5.95 16 19 C -0.11 -2.60 10.02 -39.66 -0.40 -3.00 16 20 C -0.16 -4.24 8.69 -38.87 -0.34 -4.57 16 21 C 0.13 3.41 5.56 -106.83 -0.59 2.82 16 22 C -0.46 -11.81 8.14 -37.74 -0.31 -12.12 16 23 H 0.07 1.83 6.67 -52.49 -0.35 1.48 16 24 C 0.08 1.90 5.16 -17.34 -0.09 1.81 16 25 N -0.80 -20.35 10.96 55.55 0.61 -19.74 16 26 Si 0.90 18.55 29.59 -169.99 -5.03 13.52 16 27 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 28 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 29 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 30 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.08 0.51 7.43 -51.93 -0.39 0.12 16 33 H 0.17 1.30 8.06 -52.49 -0.42 0.88 16 34 H 0.17 0.98 8.06 -52.49 -0.42 0.56 16 35 H 0.10 0.59 7.92 -51.93 -0.41 0.18 16 36 H 0.10 0.55 8.13 -51.93 -0.42 0.13 16 37 H 0.06 0.48 7.18 -51.93 -0.37 0.11 16 38 H 0.06 0.47 6.77 -51.93 -0.35 0.12 16 39 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.40 4.03 7.66 -40.82 -0.31 3.71 16 43 H 0.10 1.79 7.08 -51.93 -0.37 1.42 16 44 H 0.08 1.18 8.05 -51.93 -0.42 0.76 16 45 H 0.08 1.67 8.06 -52.48 -0.42 1.25 16 46 H 0.08 1.74 8.06 -52.48 -0.42 1.32 16 47 H 0.09 1.87 8.06 -52.49 -0.42 1.45 16 48 H 0.12 3.19 6.21 -52.49 -0.33 2.86 16 49 H 0.28 6.56 8.30 -40.82 -0.34 6.22 16 LS Contribution 403.04 15.07 6.07 6.07 Total: -1.00 -33.10 403.04 -10.86 -43.96 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: -7.48 Total: 8.75 kcal Atomic # 6 Polarization: -16.05 SS G_CDS: -4.40 Total: -20.45 kcal Atomic # 7 Polarization: -39.93 SS G_CDS: -0.11 Total: -40.05 kcal Atomic # 8 Polarization: -11.91 SS G_CDS: 0.09 Total: -11.82 kcal Atomic # 14 Polarization: 18.55 SS G_CDS: -5.03 Total: 13.52 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.10 -10.86 -43.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777363977.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.013 kcal (2) G-P(sol) polarization free energy of solvation -33.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds