Wall clock time and date at job start Wed Apr 1 2020 00:49:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30498 * 125.65504 * 2 1 4 4 C 1.34128 * 109.25994 * 180.02562 * 3 2 1 5 5 C 1.34671 * 108.01870 * 359.73127 * 4 3 2 6 6 N 1.35044 * 125.64874 * 180.02562 * 2 1 3 7 7 C 1.46501 * 126.39864 * 359.96314 * 6 2 1 8 8 C 1.53003 * 109.46806 * 85.00129 * 7 6 2 9 9 H 1.08996 * 109.47067 * 304.99758 * 8 7 6 10 10 C 1.53000 * 109.47172 * 65.00208 * 8 7 6 11 11 C 1.53005 * 109.47061 * 185.00214 * 8 7 6 12 12 N 1.46497 * 109.47213 * 174.99895 * 11 8 7 13 13 C 1.34779 * 119.99954 * 180.02562 * 12 11 8 14 14 O 1.21272 * 119.99784 * 359.97438 * 13 12 11 15 15 C 1.50703 * 119.99807 * 180.02562 * 13 12 11 16 16 C 1.50693 * 109.46712 * 179.97438 * 15 13 12 17 17 C 1.37638 * 120.12795 * 264.99121 * 16 15 13 18 18 C 1.38608 * 120.25136 * 179.97438 * 17 16 15 19 19 C 1.38653 * 120.50299 * 0.02562 * 18 17 16 20 20 C 1.37605 * 120.24698 * 0.02562 * 19 18 17 21 21 C 1.40699 * 120.13117 * 84.72666 * 16 15 13 22 22 C 1.41394 * 120.24103 * 359.97438 * 21 16 15 23 23 H 1.08001 * 120.00215 * 333.89773 * 22 21 16 24 24 C 1.39942 * 119.99947 * 153.89829 * 22 21 16 25 25 N 1.30830 * 120.00165 * 343.71894 * 24 22 21 26 26 Si 1.86802 * 120.00132 * 163.71775 * 24 22 21 27 27 H 1.48504 * 109.47144 * 60.00255 * 26 24 22 28 28 H 1.48504 * 109.46935 * 179.97438 * 26 24 22 29 29 H 1.48498 * 109.47249 * 299.99788 * 26 24 22 30 30 H 1.08995 * 109.46910 * 269.96360 * 1 2 3 31 31 H 1.09005 * 109.46875 * 29.95671 * 1 2 3 32 32 H 1.08992 * 109.47125 * 149.95711 * 1 2 3 33 33 H 1.07996 * 125.98864 * 180.02562 * 4 3 2 34 34 H 1.07996 * 126.59208 * 180.27558 * 5 4 3 35 35 H 1.08997 * 109.47047 * 325.00394 * 7 6 2 36 36 H 1.08996 * 109.47720 * 205.00238 * 7 6 2 37 37 H 1.09000 * 109.46986 * 179.97438 * 10 8 7 38 38 H 1.08995 * 109.46761 * 300.00160 * 10 8 7 39 39 H 1.09007 * 109.46778 * 59.99994 * 10 8 7 40 40 H 1.08998 * 109.47096 * 295.00274 * 11 8 7 41 41 H 1.09002 * 109.46873 * 55.00061 * 11 8 7 42 42 H 0.96999 * 119.99768 * 359.97438 * 12 11 8 43 43 H 1.09005 * 109.46458 * 299.99703 * 15 13 12 44 44 H 1.08994 * 109.47097 * 59.99426 * 15 13 12 45 45 H 1.08004 * 119.87533 * 0.02562 * 17 16 15 46 46 H 1.08004 * 119.75401 * 180.02562 * 18 17 16 47 47 H 1.08002 * 119.88393 * 179.97438 * 19 18 17 48 48 H 1.08000 * 120.12775 * 179.97438 * 20 19 18 49 49 H 0.96994 * 120.00072 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2677 1.0604 0.0000 4 6 3.5544 0.6818 -0.0006 5 6 3.5926 -0.6644 0.0051 6 7 2.2940 -1.0974 -0.0005 7 6 1.8425 -2.4911 -0.0004 8 6 1.5650 -2.9373 -1.4373 9 1 0.8562 -2.2509 -1.9005 10 6 2.8716 -2.9353 -2.2333 11 6 0.9756 -4.3493 -1.4280 12 7 0.5993 -4.7303 -2.7916 13 6 0.0548 -5.9406 -3.0271 14 8 -0.1231 -6.7142 -2.1103 15 6 -0.3317 -6.3327 -4.4299 16 6 -0.9123 -7.7233 -4.4207 17 6 -0.1102 -8.8087 -4.6909 18 6 -0.6414 -10.0889 -4.6826 19 6 -1.9842 -10.2919 -4.4032 20 6 -2.8051 -9.2215 -4.1312 21 6 -2.2752 -7.9178 -4.1303 22 6 -3.1075 -6.8109 -3.8452 23 1 -2.6817 -5.9057 -3.4382 24 6 -4.4831 -6.8883 -4.0903 25 7 -4.9580 -7.8319 -4.8623 26 14 -5.6415 -5.6446 -3.3152 27 1 -5.2734 -4.2780 -3.7650 28 1 -7.0363 -5.9424 -3.7289 29 1 -5.5357 -5.7243 -1.8361 30 1 -0.3633 -0.0007 1.0276 31 1 -0.3633 0.8904 -0.5132 32 1 -0.3633 -0.8895 -0.5145 33 1 4.4099 1.3409 -0.0003 34 1 4.4776 -1.2833 0.0104 35 1 0.9300 -2.5772 0.5895 36 1 2.6166 -3.1239 0.4335 37 1 2.6740 -3.2536 -3.2569 38 1 3.2914 -1.9294 -2.2399 39 1 3.5803 -3.6218 -1.7701 40 1 1.7180 -5.0503 -1.0466 41 1 0.0934 -4.3705 -0.7883 42 1 0.7413 -4.1113 -3.5248 43 1 -1.0736 -5.6313 -4.8118 44 1 0.5508 -6.3120 -5.0692 45 1 0.9373 -8.6623 -4.9095 46 1 -0.0045 -10.9348 -4.8954 47 1 -2.3877 -11.2937 -4.3998 48 1 -3.8509 -9.3818 -3.9142 49 1 -5.9115 -7.8858 -5.0319 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777363977.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:49:37 Heat of formation + Delta-G solvation = 9.030323 kcal Electronic energy + Delta-G solvation = -28927.162603 eV Core-core repulsion = 25046.474937 eV Total energy + Delta-G solvation = -3880.687666 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -43.05645 -40.80242 -39.21149 -37.87264 -35.48366 -35.08895 -33.49552 -32.62171 -32.54542 -31.32491 -28.90993 -28.20611 -27.51911 -27.04029 -26.08944 -22.81529 -22.33028 -22.26799 -21.77698 -20.97946 -20.36375 -19.05379 -18.10258 -17.84307 -17.29423 -16.87700 -16.53779 -16.45829 -16.13051 -15.96775 -15.34047 -15.27565 -14.95509 -14.74456 -14.50962 -14.40730 -14.34750 -13.93504 -13.62563 -13.52327 -13.50336 -13.36328 -13.34430 -13.16446 -12.89471 -12.74224 -12.62211 -12.49881 -12.42823 -12.11976 -12.08946 -11.94534 -11.30978 -11.19889 -11.01248 -10.91467 -10.80238 -10.50600 -9.98567 -9.24335 -9.21333 -9.14642 -8.57825 -6.27770 1.01148 1.11486 1.15676 1.36959 1.47127 1.55556 1.81862 1.87462 2.20282 2.20734 2.43770 2.80623 3.58384 3.62222 3.68264 3.75640 3.82145 4.00973 4.15697 4.18721 4.29037 4.41896 4.47609 4.48402 4.58618 4.60042 4.63753 4.69279 4.71933 4.74587 4.80498 4.84012 4.88472 4.90483 5.02062 5.08765 5.16194 5.21503 5.24865 5.38268 5.41980 5.56165 5.57640 5.79221 5.88192 6.05308 6.18284 6.22950 6.28893 6.43495 6.66971 6.76639 7.00816 7.13181 7.19301 7.47345 8.38426 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.013138 B = 0.002575 C = 0.002222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2130.785098 B =10872.131432 C =12596.644849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.191 3.809 3 N -0.536 5.536 4 C -0.059 4.059 5 C -0.046 4.046 6 N -0.448 5.448 7 C 0.108 3.892 8 C -0.103 4.103 9 H 0.084 0.916 10 C -0.146 4.146 11 C 0.130 3.870 12 N -0.723 5.723 13 C 0.518 3.482 14 O -0.573 6.573 15 C -0.071 4.071 16 C -0.187 4.187 17 C -0.092 4.092 18 C -0.244 4.244 19 C -0.118 4.118 20 C -0.195 4.195 21 C 0.095 3.905 22 C -0.481 4.481 23 H 0.073 0.927 24 C 0.035 3.965 25 N -0.828 5.828 26 Si 0.971 3.029 27 H -0.252 1.252 28 H -0.270 1.270 29 H -0.269 1.269 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.179 0.821 34 H 0.200 0.800 35 H 0.105 0.895 36 H 0.115 0.885 37 H 0.063 0.937 38 H 0.057 0.943 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.058 0.942 42 H 0.412 0.588 43 H 0.096 0.904 44 H 0.112 0.888 45 H 0.117 0.883 46 H 0.114 0.886 47 H 0.104 0.896 48 H 0.096 0.904 49 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.578 13.791 6.274 20.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.071 4.071 3 N -0.256 5.256 4 C -0.206 4.206 5 C -0.179 4.179 6 N -0.130 5.130 7 C -0.014 4.014 8 C -0.122 4.122 9 H 0.102 0.898 10 C -0.203 4.203 11 C 0.006 3.994 12 N -0.377 5.377 13 C 0.306 3.694 14 O -0.451 6.451 15 C -0.110 4.110 16 C -0.189 4.189 17 C -0.110 4.110 18 C -0.263 4.263 19 C -0.137 4.137 20 C -0.215 4.215 21 C 0.093 3.907 22 C -0.511 4.511 23 H 0.092 0.908 24 C -0.180 4.180 25 N -0.454 5.454 26 Si 0.792 3.208 27 H -0.176 1.176 28 H -0.194 1.194 29 H -0.194 1.194 30 H 0.107 0.893 31 H 0.106 0.894 32 H 0.105 0.895 33 H 0.197 0.803 34 H 0.217 0.783 35 H 0.124 0.876 36 H 0.133 0.867 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.076 0.924 42 H 0.249 0.751 43 H 0.114 0.886 44 H 0.130 0.870 45 H 0.135 0.865 46 H 0.132 0.868 47 H 0.122 0.878 48 H 0.114 0.886 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 12.917 13.818 6.823 20.108 hybrid contribution -0.405 -0.414 -0.073 0.583 sum 12.512 13.404 6.749 19.539 Atomic orbital electron populations 1.20300 0.83749 1.04634 1.04289 1.23708 0.96637 0.81577 1.05172 1.70206 1.03565 1.29926 1.21919 1.22642 0.94646 0.94106 1.09199 1.23102 0.87791 0.96578 1.10462 1.45469 1.06400 1.07461 1.53651 1.21995 1.03560 0.78580 0.97283 1.21570 0.99168 0.95374 0.96095 0.89767 1.21849 0.95879 1.02169 1.00445 1.21199 0.99463 0.94910 0.83877 1.45851 1.64412 1.16830 1.10638 1.21043 0.75631 0.81145 0.91587 1.90669 1.54460 1.52719 1.47254 1.20280 1.01882 0.95594 0.93277 1.19559 0.94515 0.94093 1.10742 1.20738 0.98120 0.92628 0.99480 1.20720 0.95221 0.96816 1.13558 1.20945 0.94605 0.97526 1.00577 1.21316 0.99112 0.93142 1.07888 1.17745 0.91974 0.92917 0.88070 1.19591 0.92442 1.00225 1.38797 0.90840 1.26690 1.00387 0.97948 0.92927 1.69882 1.15929 1.31894 1.27725 0.85422 0.76947 0.79201 0.79221 1.17568 1.19427 1.19388 0.89304 0.89424 0.89542 0.80344 0.78295 0.87638 0.86704 0.91833 0.92439 0.91479 0.91608 0.92409 0.75139 0.88563 0.87024 0.86509 0.86778 0.87833 0.88603 0.90430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.01 10.04 71.24 0.71 -0.29 16 2 C 0.19 3.71 7.90 138.13 1.09 4.80 16 3 N -0.54 -12.90 11.25 -188.13 -2.12 -15.02 16 4 C -0.06 -1.13 11.87 83.52 0.99 -0.14 16 5 C -0.05 -0.68 10.28 83.09 0.85 0.18 16 6 N -0.45 -6.75 2.47 -514.29 -1.27 -8.02 16 7 C 0.11 1.18 5.08 86.38 0.44 1.62 16 8 C -0.10 -1.28 2.63 -10.79 -0.03 -1.31 16 9 H 0.08 1.13 7.74 -2.39 -0.02 1.11 16 10 C -0.15 -1.71 8.82 71.98 0.63 -1.07 16 11 C 0.13 2.49 5.06 86.38 0.44 2.93 16 12 N -0.72 -16.99 5.28 -463.06 -2.45 -19.44 16 13 C 0.52 18.26 7.44 87.66 0.65 18.92 16 14 O -0.57 -26.14 16.03 -3.00 -0.05 -26.19 16 15 C -0.07 -2.56 5.18 29.10 0.15 -2.40 16 16 C -0.19 -8.79 4.43 -19.41 -0.09 -8.88 16 17 C -0.09 -4.04 9.66 22.22 0.21 -3.83 16 18 C -0.24 -11.01 10.05 22.46 0.23 -10.79 16 19 C -0.12 -5.81 10.02 22.22 0.22 -5.58 16 20 C -0.20 -10.75 8.69 22.73 0.20 -10.55 16 21 C 0.10 5.15 5.56 -21.29 -0.12 5.03 16 22 C -0.48 -25.43 8.14 23.46 0.19 -25.24 16 23 H 0.07 3.73 6.67 -2.91 -0.02 3.71 16 24 C 0.03 1.75 5.16 85.25 0.44 2.19 16 25 N -0.83 -43.67 10.96 21.83 0.24 -43.43 16 26 Si 0.97 38.27 29.59 68.60 2.03 40.30 16 27 H -0.25 -9.26 7.11 99.48 0.71 -8.55 16 28 H -0.27 -10.14 7.11 99.48 0.71 -9.44 16 29 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 30 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16 32 H 0.09 1.00 7.43 -2.39 -0.02 0.98 16 33 H 0.18 2.65 8.06 -2.91 -0.02 2.63 16 34 H 0.20 1.61 8.06 -2.91 -0.02 1.58 16 35 H 0.11 1.02 7.92 -2.39 -0.02 1.00 16 36 H 0.11 0.90 8.13 -2.39 -0.02 0.88 16 37 H 0.06 0.76 7.18 -2.39 -0.02 0.74 16 38 H 0.06 0.73 6.77 -2.39 -0.02 0.72 16 39 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 40 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.41 7.16 7.66 -92.71 -0.71 6.45 16 43 H 0.10 3.47 7.08 -2.38 -0.02 3.45 16 44 H 0.11 3.14 8.05 -2.39 -0.02 3.12 16 45 H 0.12 4.29 8.06 -2.91 -0.02 4.27 16 46 H 0.11 4.39 8.06 -2.91 -0.02 4.37 16 47 H 0.10 4.53 8.06 -2.91 -0.02 4.51 16 48 H 0.10 5.54 6.21 -2.91 -0.02 5.52 16 49 H 0.29 13.72 8.30 -92.71 -0.77 12.95 16 Total: -1.00 -74.51 403.04 3.86 -70.65 By element: Atomic # 1 Polarization: 35.31 SS G_CDS: 0.25 Total: 35.56 kcal Atomic # 6 Polarization: -41.64 SS G_CDS: 7.22 Total: -34.42 kcal Atomic # 7 Polarization: -80.31 SS G_CDS: -5.59 Total: -85.90 kcal Atomic # 8 Polarization: -26.14 SS G_CDS: -0.05 Total: -26.19 kcal Atomic # 14 Polarization: 38.27 SS G_CDS: 2.03 Total: 40.30 kcal Total: -74.51 3.86 -70.65 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777363977.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.685 kcal (2) G-P(sol) polarization free energy of solvation -74.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds