Wall clock time and date at job start Wed Apr 1 2020 00:57:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53006 * 109.46954 * 2 1 4 4 C 1.50694 * 109.47262 * 120.00142 * 2 1 3 5 5 N 1.30507 * 125.65143 * 300.02640 * 4 2 1 6 6 C 1.34133 * 109.25643 * 179.73135 * 5 4 2 7 7 C 1.34674 * 108.01650 * 0.39916 * 6 5 4 8 8 N 1.35038 * 125.65207 * 119.99898 * 4 2 1 9 9 C 1.46510 * 126.39645 * 0.02562 * 8 4 2 10 10 C 1.52993 * 109.46885 * 85.02190 * 9 8 4 11 11 N 1.46510 * 109.46885 * 179.97438 * 10 9 8 12 12 C 1.34772 * 120.00073 * 179.97438 * 11 10 9 13 13 O 1.21280 * 119.99826 * 0.02562 * 12 11 10 14 14 C 1.50691 * 119.99970 * 180.02562 * 12 11 10 15 15 C 1.50709 * 109.47275 * 180.02562 * 14 12 11 16 16 C 1.37635 * 120.12498 * 265.00128 * 15 14 12 17 17 C 1.38612 * 120.24902 * 179.97438 * 16 15 14 18 18 C 1.38657 * 120.49991 * 0.02562 * 17 16 15 19 19 C 1.37600 * 120.25106 * 0.02562 * 18 17 16 20 20 C 1.40691 * 120.12737 * 84.72182 * 15 14 12 21 21 C 1.41398 * 120.24621 * 0.02562 * 20 15 14 22 22 H 1.08006 * 119.99655 * 333.88956 * 21 20 15 23 23 C 1.39944 * 120.00290 * 153.89612 * 21 20 15 24 24 N 1.30827 * 119.99830 * 343.71155 * 23 21 20 25 25 Si 1.86802 * 120.00297 * 163.71742 * 23 21 20 26 26 H 1.48495 * 109.46951 * 59.99551 * 25 23 21 27 27 H 1.48496 * 109.47133 * 179.97438 * 25 23 21 28 28 H 1.48500 * 109.46979 * 299.99800 * 25 23 21 29 29 H 1.09001 * 109.46922 * 299.99896 * 1 2 3 30 30 H 1.09003 * 109.47016 * 59.99547 * 1 2 3 31 31 H 1.08992 * 109.46885 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46922 * 240.00104 * 2 1 3 33 33 H 1.09003 * 109.46730 * 60.00113 * 3 2 1 34 34 H 1.08995 * 109.46808 * 179.97438 * 3 2 1 35 35 H 1.08992 * 109.47189 * 300.00144 * 3 2 1 36 36 H 1.07991 * 125.98968 * 180.24955 * 6 5 4 37 37 H 1.08004 * 126.58631 * 179.87561 * 7 6 5 38 38 H 1.09000 * 109.47084 * 205.02843 * 9 8 4 39 39 H 1.09004 * 109.46569 * 325.02313 * 9 8 4 40 40 H 1.08995 * 109.47340 * 300.00171 * 10 9 8 41 41 H 1.09004 * 109.47417 * 60.00642 * 10 9 8 42 42 H 0.96996 * 119.99759 * 0.02562 * 11 10 9 43 43 H 1.09007 * 109.47468 * 299.99899 * 14 12 11 44 44 H 1.08997 * 109.47702 * 60.00293 * 14 12 11 45 45 H 1.08004 * 119.88121 * 359.97438 * 16 15 14 46 46 H 1.07998 * 119.75082 * 179.97438 * 17 16 15 47 47 H 1.07998 * 119.87722 * 180.02562 * 18 17 16 48 48 H 1.07993 * 120.13431 * 179.97438 * 19 18 17 49 49 H 0.97000 * 120.00425 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 1.7857 -0.3623 2.4637 6 6 2.3884 -1.2246 3.2958 7 6 3.0404 -2.1368 2.5497 8 7 2.8120 -1.8130 1.2395 9 6 3.3189 -2.5290 0.0661 10 6 4.6108 -1.8666 -0.4167 11 7 5.1181 -2.5830 -1.5897 12 6 6.2536 -2.1745 -2.1898 13 8 6.8557 -1.2142 -1.7585 14 6 6.7749 -2.9110 -3.3967 15 6 8.0476 -2.2587 -3.8722 16 6 8.0080 -1.3159 -4.8743 17 6 9.1769 -0.7140 -5.3132 18 6 10.3977 -1.0535 -4.7503 19 6 10.4613 -1.9942 -3.7480 20 6 9.2800 -2.6068 -3.2896 21 6 9.3322 -3.5701 -2.2558 22 1 8.4704 -3.7331 -1.6256 23 6 10.5006 -4.3120 -2.0491 24 7 11.4193 -4.3583 -2.9794 25 14 10.7485 -5.2366 -0.4449 26 1 9.6578 -6.2293 -0.2722 27 1 12.0564 -5.9392 -0.4755 28 1 10.7281 -4.2766 0.6879 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9564 -0.8899 36 1 2.3583 -1.1917 4.3748 37 1 3.6268 -2.9669 2.9150 38 1 3.5200 -3.5666 0.3324 39 1 2.5744 -2.4958 -0.7294 40 1 4.4097 -0.8290 -0.6830 41 1 5.3554 -1.8998 0.3787 42 1 4.6362 -3.3508 -1.9349 43 1 6.9766 -3.9485 -3.1302 44 1 6.0304 -2.8782 -4.1921 45 1 7.0627 -1.0441 -5.3202 46 1 9.1366 0.0244 -6.1003 47 1 11.3022 -0.5779 -5.0997 48 1 11.4131 -2.2575 -3.3111 49 1 12.2294 -4.8723 -2.8361 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777398250.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:57:56 Heat of formation + Delta-G solvation = 27.613514 kcal Electronic energy + Delta-G solvation = -29026.261898 eV Core-core repulsion = 25146.380059 eV Total energy + Delta-G solvation = -3879.881838 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.34872 -39.35653 -37.43263 -35.75892 -35.56597 -33.64254 -33.41288 -31.75586 -29.51122 -29.26634 -28.73930 -27.37343 -26.67962 -25.04810 -23.62129 -22.89521 -21.41424 -20.96576 -20.71381 -19.58206 -19.08299 -17.42163 -17.20773 -16.59682 -16.00944 -15.77891 -15.41479 -15.02312 -14.98632 -14.52276 -14.43152 -14.20341 -13.78859 -13.64483 -13.42732 -13.33241 -13.15161 -13.09139 -12.60305 -12.48089 -12.28674 -11.96100 -11.75899 -11.72374 -11.59015 -11.43038 -11.20153 -11.17361 -11.05475 -11.00755 -10.72024 -10.43128 -10.10142 -9.83302 -9.50995 -9.41350 -9.28670 -9.17603 -8.93548 -8.51951 -7.33155 -7.31561 -6.75595 -4.36860 1.84061 2.38788 2.78290 2.96254 3.01038 3.03728 3.06330 3.22678 3.25861 3.59338 3.90814 4.13623 4.26027 4.41440 4.48523 4.64302 4.77715 4.83051 4.88814 5.02995 5.27153 5.37631 5.38997 5.43926 5.51317 5.60666 5.64259 5.69556 5.72841 5.76815 5.97135 5.97751 6.06258 6.09209 6.17156 6.26098 6.38289 6.49366 6.53339 6.61636 6.77666 6.97574 7.06222 7.27775 7.40504 7.60754 7.74378 7.91108 7.95882 8.04517 8.11514 8.29302 8.62236 8.73453 8.89239 8.99580 10.18499 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.012378 B = 0.002747 C = 0.002367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2261.562680 B =10190.862490 C =11825.275894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.010 4.010 3 C -0.141 4.141 4 C 0.216 3.784 5 N -0.487 5.487 6 C -0.030 4.030 7 C -0.056 4.056 8 N -0.452 5.452 9 C 0.093 3.907 10 C 0.108 3.892 11 N -0.746 5.746 12 C 0.516 3.484 13 O -0.515 6.515 14 C -0.069 4.069 15 C -0.183 4.183 16 C -0.081 4.081 17 C -0.239 4.239 18 C -0.107 4.107 19 C -0.159 4.159 20 C 0.129 3.871 21 C -0.457 4.457 22 H 0.073 0.927 23 C 0.077 3.923 24 N -0.795 5.795 25 Si 0.903 3.097 26 H -0.267 1.267 27 H -0.278 1.278 28 H -0.264 1.264 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.052 0.948 32 H 0.081 0.919 33 H 0.067 0.933 34 H 0.056 0.944 35 H 0.064 0.936 36 H 0.169 0.831 37 H 0.174 0.826 38 H 0.100 0.900 39 H 0.097 0.903 40 H 0.070 0.930 41 H 0.072 0.928 42 H 0.397 0.603 43 H 0.097 0.903 44 H 0.077 0.923 45 H 0.084 0.916 46 H 0.085 0.915 47 H 0.086 0.914 48 H 0.117 0.883 49 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.919 0.088 5.274 18.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.031 4.031 3 C -0.199 4.199 4 C -0.047 4.047 5 N -0.205 5.205 6 C -0.177 4.177 7 C -0.188 4.188 8 N -0.135 5.135 9 C -0.030 4.030 10 C -0.017 4.017 11 N -0.402 5.402 12 C 0.303 3.697 13 O -0.387 6.387 14 C -0.108 4.108 15 C -0.185 4.185 16 C -0.099 4.099 17 C -0.259 4.259 18 C -0.125 4.125 19 C -0.178 4.178 20 C 0.127 3.873 21 C -0.487 4.487 22 H 0.091 0.909 23 C -0.140 4.140 24 N -0.420 5.420 25 Si 0.728 3.272 26 H -0.191 1.191 27 H -0.203 1.203 28 H -0.189 1.189 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.099 0.901 33 H 0.086 0.914 34 H 0.075 0.925 35 H 0.083 0.917 36 H 0.186 0.814 37 H 0.191 0.809 38 H 0.119 0.881 39 H 0.116 0.884 40 H 0.088 0.912 41 H 0.090 0.910 42 H 0.231 0.769 43 H 0.115 0.885 44 H 0.095 0.905 45 H 0.102 0.898 46 H 0.104 0.896 47 H 0.104 0.896 48 H 0.135 0.865 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -17.624 1.278 5.679 18.560 hybrid contribution 0.643 -1.698 0.486 1.880 sum -16.981 -0.420 6.165 18.070 Atomic orbital electron populations 1.21776 0.93072 1.02011 1.02795 1.19586 0.96601 0.96036 0.90833 1.21786 1.01403 0.93985 1.02713 1.23261 0.97003 0.88675 0.95725 1.70185 1.24212 1.27101 0.98983 1.22278 1.01331 0.94515 0.99598 1.22747 1.08223 1.05138 0.82726 1.45260 1.38512 1.23208 1.06514 1.22015 0.96777 0.97002 0.87232 1.21462 0.93940 0.96703 0.89605 1.46002 1.27910 1.34749 1.31536 1.21330 0.78700 0.84606 0.85014 1.90707 1.56343 1.27285 1.64399 1.20258 0.96520 1.00480 0.93576 1.19032 0.92987 1.04789 1.01711 1.20298 0.96017 0.96442 0.97160 1.20312 0.93201 1.06505 1.05844 1.20687 0.95761 0.98253 0.97815 1.21306 0.99143 0.97797 0.99592 1.17332 0.90179 0.89783 0.90031 1.19420 0.98495 1.17172 1.13631 0.90930 1.25873 0.95200 0.95949 0.97017 1.69808 1.07626 1.32959 1.31627 0.86454 0.78270 0.79701 0.82805 1.19133 1.20284 1.18907 0.91337 0.91790 0.92890 0.90082 0.91361 0.92463 0.91741 0.81378 0.80866 0.88118 0.88425 0.91153 0.91015 0.76933 0.88469 0.90477 0.89757 0.89634 0.89550 0.86506 0.90875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 9.18 37.16 0.34 -0.76 16 2 C -0.01 -0.09 3.25 -91.77 -0.30 -0.39 16 3 C -0.14 -1.34 9.18 37.16 0.34 -1.00 16 4 C 0.22 2.48 6.41 -155.42 -1.00 1.48 16 5 N -0.49 -6.36 11.25 -10.82 -0.12 -6.49 16 6 C -0.03 -0.34 11.87 -17.81 -0.21 -0.55 16 7 C -0.06 -0.58 11.58 -16.56 -0.19 -0.77 16 8 N -0.45 -4.69 2.75 -113.90 -0.31 -5.00 16 9 C 0.09 0.76 5.81 -4.04 -0.02 0.74 16 10 C 0.11 1.27 6.00 -4.04 -0.02 1.25 16 11 N -0.75 -9.37 5.56 -60.30 -0.33 -9.71 16 12 C 0.52 9.41 7.44 -10.99 -0.08 9.33 16 13 O -0.51 -12.00 16.03 5.56 0.09 -11.92 16 14 C -0.07 -1.27 5.18 -29.03 -0.15 -1.42 16 15 C -0.18 -4.31 4.43 -103.91 -0.46 -4.77 16 16 C -0.08 -1.84 9.66 -39.66 -0.38 -2.22 16 17 C -0.24 -5.53 10.05 -39.29 -0.39 -5.92 16 18 C -0.11 -2.59 10.02 -39.66 -0.40 -2.99 16 19 C -0.16 -4.23 8.69 -38.87 -0.34 -4.57 16 20 C 0.13 3.41 5.56 -106.82 -0.59 2.82 16 21 C -0.46 -11.84 8.14 -37.74 -0.31 -12.15 16 22 H 0.07 1.81 6.67 -52.48 -0.35 1.46 16 23 C 0.08 1.91 5.16 -17.34 -0.09 1.82 16 24 N -0.79 -20.31 10.95 55.55 0.61 -19.70 16 25 Si 0.90 18.61 29.59 -169.99 -5.03 13.58 16 26 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 27 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 28 H -0.26 -5.56 7.11 56.52 0.40 -5.16 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.08 0.66 6.85 -51.93 -0.36 0.30 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.17 1.51 8.06 -52.49 -0.42 1.09 16 37 H 0.17 1.32 8.06 -52.48 -0.42 0.90 16 38 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.10 0.61 7.28 -51.93 -0.38 0.23 16 40 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.40 3.48 8.47 -40.82 -0.35 3.14 16 43 H 0.10 1.76 7.08 -51.93 -0.37 1.39 16 44 H 0.08 1.16 8.05 -51.93 -0.42 0.74 16 45 H 0.08 1.66 8.06 -52.48 -0.42 1.24 16 46 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 47 H 0.09 1.88 8.06 -52.49 -0.42 1.45 16 48 H 0.12 3.19 6.20 -52.49 -0.33 2.87 16 49 H 0.28 6.56 8.30 -40.82 -0.34 6.22 16 LS Contribution 407.51 15.07 6.14 6.14 Total: -1.00 -33.16 407.51 -10.82 -43.98 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: -7.59 Total: 9.16 kcal Atomic # 6 Polarization: -15.80 SS G_CDS: -4.26 Total: -20.06 kcal Atomic # 7 Polarization: -40.74 SS G_CDS: -0.16 Total: -40.90 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: 0.09 Total: -11.92 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -5.03 Total: 13.58 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -33.16 -10.82 -43.98 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777398250.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.594 kcal (2) G-P(sol) polarization free energy of solvation -33.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.980 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds