Wall clock time and date at job start Wed Apr 1 2020 00:57:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53006 * 109.46954 * 2 1 4 4 C 1.50694 * 109.47262 * 120.00142 * 2 1 3 5 5 N 1.30507 * 125.65143 * 300.02640 * 4 2 1 6 6 C 1.34133 * 109.25643 * 179.73135 * 5 4 2 7 7 C 1.34674 * 108.01650 * 0.39916 * 6 5 4 8 8 N 1.35038 * 125.65207 * 119.99898 * 4 2 1 9 9 C 1.46510 * 126.39645 * 0.02562 * 8 4 2 10 10 C 1.52993 * 109.46885 * 85.02190 * 9 8 4 11 11 N 1.46510 * 109.46885 * 179.97438 * 10 9 8 12 12 C 1.34772 * 120.00073 * 179.97438 * 11 10 9 13 13 O 1.21280 * 119.99826 * 0.02562 * 12 11 10 14 14 C 1.50691 * 119.99970 * 180.02562 * 12 11 10 15 15 C 1.50709 * 109.47275 * 180.02562 * 14 12 11 16 16 C 1.37635 * 120.12498 * 265.00128 * 15 14 12 17 17 C 1.38612 * 120.24902 * 179.97438 * 16 15 14 18 18 C 1.38657 * 120.49991 * 0.02562 * 17 16 15 19 19 C 1.37600 * 120.25106 * 0.02562 * 18 17 16 20 20 C 1.40691 * 120.12737 * 84.72182 * 15 14 12 21 21 C 1.41398 * 120.24621 * 0.02562 * 20 15 14 22 22 H 1.08006 * 119.99655 * 333.88956 * 21 20 15 23 23 C 1.39944 * 120.00290 * 153.89612 * 21 20 15 24 24 N 1.30827 * 119.99830 * 343.71155 * 23 21 20 25 25 Si 1.86802 * 120.00297 * 163.71742 * 23 21 20 26 26 H 1.48495 * 109.46951 * 59.99551 * 25 23 21 27 27 H 1.48496 * 109.47133 * 179.97438 * 25 23 21 28 28 H 1.48500 * 109.46979 * 299.99800 * 25 23 21 29 29 H 1.09001 * 109.46922 * 299.99896 * 1 2 3 30 30 H 1.09003 * 109.47016 * 59.99547 * 1 2 3 31 31 H 1.08992 * 109.46885 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46922 * 240.00104 * 2 1 3 33 33 H 1.09003 * 109.46730 * 60.00113 * 3 2 1 34 34 H 1.08995 * 109.46808 * 179.97438 * 3 2 1 35 35 H 1.08992 * 109.47189 * 300.00144 * 3 2 1 36 36 H 1.07991 * 125.98968 * 180.24955 * 6 5 4 37 37 H 1.08004 * 126.58631 * 179.87561 * 7 6 5 38 38 H 1.09000 * 109.47084 * 205.02843 * 9 8 4 39 39 H 1.09004 * 109.46569 * 325.02313 * 9 8 4 40 40 H 1.08995 * 109.47340 * 300.00171 * 10 9 8 41 41 H 1.09004 * 109.47417 * 60.00642 * 10 9 8 42 42 H 0.96996 * 119.99759 * 0.02562 * 11 10 9 43 43 H 1.09007 * 109.47468 * 299.99899 * 14 12 11 44 44 H 1.08997 * 109.47702 * 60.00293 * 14 12 11 45 45 H 1.08004 * 119.88121 * 359.97438 * 16 15 14 46 46 H 1.07998 * 119.75082 * 179.97438 * 17 16 15 47 47 H 1.07998 * 119.87722 * 180.02562 * 18 17 16 48 48 H 1.07993 * 120.13431 * 179.97438 * 19 18 17 49 49 H 0.97000 * 120.00425 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 1.7857 -0.3623 2.4637 6 6 2.3884 -1.2246 3.2958 7 6 3.0404 -2.1368 2.5497 8 7 2.8120 -1.8130 1.2395 9 6 3.3189 -2.5290 0.0661 10 6 4.6108 -1.8666 -0.4167 11 7 5.1181 -2.5830 -1.5897 12 6 6.2536 -2.1745 -2.1898 13 8 6.8557 -1.2142 -1.7585 14 6 6.7749 -2.9110 -3.3967 15 6 8.0476 -2.2587 -3.8722 16 6 8.0080 -1.3159 -4.8743 17 6 9.1769 -0.7140 -5.3132 18 6 10.3977 -1.0535 -4.7503 19 6 10.4613 -1.9942 -3.7480 20 6 9.2800 -2.6068 -3.2896 21 6 9.3322 -3.5701 -2.2558 22 1 8.4704 -3.7331 -1.6256 23 6 10.5006 -4.3120 -2.0491 24 7 11.4193 -4.3583 -2.9794 25 14 10.7485 -5.2366 -0.4449 26 1 9.6578 -6.2293 -0.2722 27 1 12.0564 -5.9392 -0.4755 28 1 10.7281 -4.2766 0.6879 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9564 -0.8899 36 1 2.3583 -1.1917 4.3748 37 1 3.6268 -2.9669 2.9150 38 1 3.5200 -3.5666 0.3324 39 1 2.5744 -2.4958 -0.7294 40 1 4.4097 -0.8290 -0.6830 41 1 5.3554 -1.8998 0.3787 42 1 4.6362 -3.3508 -1.9349 43 1 6.9766 -3.9485 -3.1302 44 1 6.0304 -2.8782 -4.1921 45 1 7.0627 -1.0441 -5.3202 46 1 9.1366 0.0244 -6.1003 47 1 11.3022 -0.5779 -5.0997 48 1 11.4131 -2.2575 -3.3111 49 1 12.2294 -4.8723 -2.8361 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777398250.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:57:55 Heat of formation + Delta-G solvation = 8.762822 kcal Electronic energy + Delta-G solvation = -29027.079325 eV Core-core repulsion = 25146.380059 eV Total energy + Delta-G solvation = -3880.699265 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -43.14079 -40.80416 -39.15545 -36.82785 -36.27740 -35.49609 -34.49179 -33.39877 -31.34784 -30.30407 -29.64353 -28.18840 -28.05372 -26.83227 -24.59597 -23.67095 -22.82243 -22.25270 -22.13621 -21.06879 -19.98521 -19.07044 -18.30259 -17.77471 -17.31441 -17.09978 -16.70998 -16.25985 -16.04479 -15.91719 -15.46868 -15.33753 -15.21432 -14.74202 -14.62089 -14.49604 -14.35945 -14.22633 -13.95223 -13.52642 -13.36488 -13.30475 -12.97691 -12.91580 -12.88487 -12.76024 -12.55742 -12.47705 -12.40427 -12.13468 -12.12477 -11.87419 -11.31892 -11.21194 -11.02865 -10.97570 -10.85389 -10.61455 -10.14087 -9.32068 -9.22300 -9.15938 -8.59245 -6.29303 0.97737 1.04540 1.14251 1.35173 1.45208 1.53890 1.63168 1.81259 2.17418 2.18904 2.47424 2.79464 3.40991 3.58688 3.63497 3.74653 3.79934 4.11174 4.13096 4.17146 4.20044 4.32915 4.39543 4.42700 4.47586 4.60618 4.63913 4.71640 4.74751 4.79482 4.80242 4.83808 4.89204 4.94887 5.06285 5.08012 5.20200 5.27787 5.32625 5.36845 5.40944 5.42530 5.55651 5.78197 5.83990 6.04083 6.17062 6.20985 6.22110 6.42055 6.62217 6.75026 6.99221 7.12143 7.14639 7.41748 8.36957 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.012378 B = 0.002747 C = 0.002367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2261.562680 B =10190.862490 C =11825.275894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.012 4.012 3 C -0.137 4.137 4 C 0.205 3.795 5 N -0.521 5.521 6 C -0.055 4.055 7 C -0.055 4.055 8 N -0.455 5.455 9 C 0.101 3.899 10 C 0.114 3.886 11 N -0.718 5.718 12 C 0.518 3.482 13 O -0.575 6.575 14 C -0.068 4.068 15 C -0.188 4.188 16 C -0.091 4.091 17 C -0.244 4.244 18 C -0.119 4.119 19 C -0.196 4.196 20 C 0.095 3.905 21 C -0.482 4.482 22 H 0.074 0.926 23 C 0.036 3.964 24 N -0.827 5.827 25 Si 0.970 3.030 26 H -0.249 1.249 27 H -0.269 1.269 28 H -0.273 1.273 29 H 0.052 0.948 30 H 0.082 0.918 31 H 0.056 0.944 32 H 0.097 0.903 33 H 0.055 0.945 34 H 0.037 0.963 35 H 0.083 0.917 36 H 0.182 0.818 37 H 0.199 0.801 38 H 0.127 0.873 39 H 0.126 0.874 40 H 0.055 0.945 41 H 0.045 0.955 42 H 0.421 0.579 43 H 0.101 0.899 44 H 0.119 0.881 45 H 0.119 0.881 46 H 0.114 0.886 47 H 0.103 0.897 48 H 0.095 0.905 49 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.347 -1.339 4.712 20.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.032 4.032 3 C -0.196 4.196 4 C -0.058 4.058 5 N -0.240 5.240 6 C -0.201 4.201 7 C -0.187 4.187 8 N -0.138 5.138 9 C -0.021 4.021 10 C -0.011 4.011 11 N -0.374 5.374 12 C 0.307 3.693 13 O -0.453 6.453 14 C -0.107 4.107 15 C -0.189 4.189 16 C -0.109 4.109 17 C -0.263 4.263 18 C -0.137 4.137 19 C -0.216 4.216 20 C 0.093 3.907 21 C -0.512 4.512 22 H 0.092 0.908 23 C -0.179 4.179 24 N -0.453 5.453 25 Si 0.791 3.209 26 H -0.173 1.173 27 H -0.193 1.193 28 H -0.198 1.198 29 H 0.071 0.929 30 H 0.101 0.899 31 H 0.075 0.925 32 H 0.115 0.885 33 H 0.074 0.926 34 H 0.056 0.944 35 H 0.102 0.898 36 H 0.199 0.801 37 H 0.216 0.784 38 H 0.145 0.855 39 H 0.144 0.856 40 H 0.074 0.926 41 H 0.064 0.936 42 H 0.258 0.742 43 H 0.119 0.881 44 H 0.137 0.863 45 H 0.137 0.863 46 H 0.132 0.868 47 H 0.121 0.879 48 H 0.113 0.887 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -20.109 -0.196 5.102 20.747 hybrid contribution 1.353 -1.162 0.605 1.884 sum -18.756 -1.358 5.707 19.652 Atomic orbital electron populations 1.21723 0.92005 1.02314 1.02950 1.19720 0.97440 0.95471 0.90552 1.21750 1.00060 0.94705 1.03038 1.23678 0.97099 0.89069 0.95967 1.70147 1.25494 1.28235 1.00108 1.22675 1.01999 0.94939 1.00529 1.23192 1.07559 1.05311 0.82674 1.45400 1.38172 1.23115 1.07093 1.22102 0.95301 0.97361 0.87380 1.21400 0.95067 0.96438 0.88243 1.45600 1.26149 1.34786 1.30845 1.21202 0.79519 0.83713 0.84914 1.90696 1.58521 1.29996 1.66042 1.20289 0.95451 0.99926 0.95067 1.19565 0.94093 1.04294 1.00995 1.20764 0.97426 0.95841 0.96888 1.20730 0.92844 1.06680 1.06044 1.20949 0.97372 0.97935 0.97463 1.21320 0.98820 0.99893 1.01535 1.17752 0.91378 0.90592 0.91017 1.19599 0.99383 1.17961 1.14279 0.90832 1.26672 0.94612 0.96635 0.99967 1.69879 1.08188 1.33882 1.33384 0.85435 0.78996 0.78462 0.77971 1.17304 1.19334 1.19833 0.92910 0.89876 0.92481 0.88474 0.92634 0.94407 0.89814 0.80092 0.78374 0.85524 0.85569 0.92626 0.93640 0.74156 0.88092 0.86319 0.86258 0.86765 0.87903 0.88690 0.90410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.84 9.18 71.98 0.66 -1.18 16 2 C -0.01 -0.20 3.25 -11.54 -0.04 -0.23 16 3 C -0.14 -2.53 9.18 71.98 0.66 -1.87 16 4 C 0.20 4.46 6.41 138.13 0.89 5.35 16 5 N -0.52 -13.53 11.25 -188.14 -2.12 -15.65 16 6 C -0.05 -1.22 11.87 83.52 0.99 -0.22 16 7 C -0.05 -1.04 11.58 83.09 0.96 -0.07 16 8 N -0.46 -8.50 2.75 -514.27 -1.41 -9.92 16 9 C 0.10 1.30 5.81 86.38 0.50 1.81 16 10 C 0.11 2.47 6.00 86.38 0.52 2.99 16 11 N -0.72 -16.03 5.56 -463.07 -2.57 -18.61 16 12 C 0.52 18.11 7.44 87.65 0.65 18.76 16 13 O -0.57 -26.93 16.03 -3.03 -0.05 -26.98 16 14 C -0.07 -2.36 5.18 29.10 0.15 -2.21 16 15 C -0.19 -8.70 4.43 -19.40 -0.09 -8.79 16 16 C -0.09 -3.98 9.66 22.22 0.21 -3.77 16 17 C -0.24 -10.99 10.05 22.46 0.23 -10.76 16 18 C -0.12 -5.86 10.02 22.22 0.22 -5.64 16 19 C -0.20 -10.85 8.69 22.73 0.20 -10.65 16 20 C 0.09 5.12 5.56 -21.29 -0.12 5.00 16 21 C -0.48 -25.50 8.14 23.46 0.19 -25.31 16 22 H 0.07 3.72 6.67 -2.91 -0.02 3.70 16 23 C 0.04 1.79 5.16 85.26 0.44 2.23 16 24 N -0.83 -43.58 10.95 21.83 0.24 -43.34 16 25 Si 0.97 38.38 29.59 68.60 2.03 40.40 16 26 H -0.25 -9.09 7.11 99.48 0.71 -8.38 16 27 H -0.27 -10.13 7.11 99.48 0.71 -9.42 16 28 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 29 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.10 1.29 6.85 -2.39 -0.02 1.28 16 33 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.18 3.21 8.06 -2.92 -0.02 3.18 16 37 H 0.20 2.53 8.06 -2.91 -0.02 2.50 16 38 H 0.13 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.13 0.97 7.28 -2.39 -0.02 0.96 16 40 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.42 5.56 8.47 -92.71 -0.79 4.77 16 43 H 0.10 3.45 7.08 -2.38 -0.02 3.43 16 44 H 0.12 3.08 8.05 -2.39 -0.02 3.06 16 45 H 0.12 4.29 8.06 -2.91 -0.02 4.26 16 46 H 0.11 4.39 8.06 -2.91 -0.02 4.37 16 47 H 0.10 4.53 8.06 -2.91 -0.02 4.51 16 48 H 0.10 5.52 6.20 -2.91 -0.02 5.50 16 49 H 0.29 13.72 8.30 -92.71 -0.77 12.95 16 Total: -1.00 -76.70 407.51 3.51 -73.18 By element: Atomic # 1 Polarization: 35.30 SS G_CDS: 0.17 Total: 35.46 kcal Atomic # 6 Polarization: -41.79 SS G_CDS: 7.23 Total: -34.56 kcal Atomic # 7 Polarization: -81.65 SS G_CDS: -5.87 Total: -87.51 kcal Atomic # 8 Polarization: -26.93 SS G_CDS: -0.05 Total: -26.98 kcal Atomic # 14 Polarization: 38.38 SS G_CDS: 2.03 Total: 40.40 kcal Total: -76.70 3.51 -73.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777398250.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.945 kcal (2) G-P(sol) polarization free energy of solvation -76.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds