Wall clock time and date at job start Wed Apr 1 2020 00:49:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30506 * 125.65016 * 2 1 4 4 C 1.34129 * 109.25137 * 180.29490 * 3 2 1 5 5 C 1.34665 * 108.02059 * 359.72019 * 4 3 2 6 6 N 1.35038 * 125.64911 * 179.82464 * 2 1 3 7 7 C 1.46501 * 126.39701 * 359.97003 * 6 2 1 8 8 C 1.53000 * 109.46960 * 84.71953 * 7 6 2 9 9 C 1.53003 * 109.47100 * 179.97438 * 8 7 6 10 10 C 1.52998 * 109.46738 * 179.97438 * 9 8 7 11 11 N 1.46502 * 109.46968 * 179.97438 * 10 9 8 12 12 C 1.34779 * 120.00144 * 179.97438 * 11 10 9 13 13 O 1.21281 * 120.00217 * 0.02562 * 12 11 10 14 14 C 1.50698 * 119.99923 * 180.02562 * 12 11 10 15 15 C 1.50703 * 109.47057 * 180.02562 * 14 12 11 16 16 C 1.37633 * 120.12881 * 264.99817 * 15 14 12 17 17 C 1.38610 * 120.25034 * 179.97438 * 16 15 14 18 18 C 1.38660 * 120.50091 * 0.02831 * 17 16 15 19 19 C 1.37593 * 120.24537 * 0.02562 * 18 17 16 20 20 C 1.40697 * 120.12503 * 84.72661 * 15 14 12 21 21 C 1.41394 * 120.25005 * 359.97438 * 20 15 14 22 22 H 1.08002 * 119.99367 * 333.90491 * 21 20 15 23 23 C 1.39936 * 120.00329 * 153.89889 * 21 20 15 24 24 N 1.30823 * 120.00218 * 343.71110 * 23 21 20 25 25 Si 1.86806 * 120.00088 * 163.71342 * 23 21 20 26 26 H 1.48505 * 109.47079 * 90.00193 * 25 23 21 27 27 H 1.48502 * 109.47027 * 209.99966 * 25 23 21 28 28 H 1.48497 * 109.46857 * 330.00048 * 25 23 21 29 29 H 1.09000 * 109.47305 * 270.17760 * 1 2 3 30 30 H 1.09003 * 109.47421 * 30.17700 * 1 2 3 31 31 H 1.08996 * 109.47360 * 150.18083 * 1 2 3 32 32 H 1.07997 * 125.98327 * 179.72893 * 4 3 2 33 33 H 1.08000 * 126.58851 * 179.97438 * 5 4 3 34 34 H 1.08998 * 109.47548 * 324.72110 * 7 6 2 35 35 H 1.09000 * 109.47084 * 204.71388 * 7 6 2 36 36 H 1.09004 * 109.47256 * 59.99716 * 8 7 6 37 37 H 1.09002 * 109.47247 * 299.99823 * 8 7 6 38 38 H 1.08995 * 109.46929 * 60.00282 * 9 8 7 39 39 H 1.09000 * 109.47070 * 299.99511 * 9 8 7 40 40 H 1.09002 * 109.47513 * 60.00453 * 10 9 8 41 41 H 1.09002 * 109.47490 * 299.99818 * 10 9 8 42 42 H 0.97000 * 119.99916 * 359.97438 * 11 10 9 43 43 H 1.09000 * 109.47002 * 299.99686 * 14 12 11 44 44 H 1.08998 * 109.47482 * 60.00317 * 14 12 11 45 45 H 1.08002 * 119.87475 * 0.02562 * 16 15 14 46 46 H 1.08004 * 119.74981 * 180.02562 * 17 16 15 47 47 H 1.07996 * 119.87334 * 179.97438 * 18 17 16 48 48 H 1.07999 * 120.12482 * 179.97438 * 19 18 17 49 49 H 0.97001 * 120.00340 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2676 1.0605 0.0000 4 6 3.5543 0.6818 -0.0065 5 6 3.5925 -0.6643 -0.0045 6 7 2.2940 -1.0973 0.0034 7 6 1.8424 -2.4910 0.0082 8 6 1.5583 -2.9400 -1.4265 9 6 1.0873 -4.3957 -1.4215 10 6 0.8026 -4.8445 -2.8562 11 7 0.3522 -6.2385 -2.8516 12 6 0.0410 -6.8501 -4.0116 13 8 0.1343 -6.2465 -5.0594 14 6 -0.4229 -8.2839 -4.0067 15 6 -0.7032 -8.7260 -5.4199 16 6 -1.9821 -8.6588 -5.9239 17 6 -2.2427 -9.0643 -7.2235 18 6 -1.2209 -9.5421 -8.0300 19 6 0.0651 -9.6191 -7.5466 20 6 0.3426 -9.2037 -6.2309 21 6 1.6616 -9.2714 -5.7260 22 1 1.9703 -8.6080 -4.9316 23 6 2.5668 -10.1979 -6.2554 24 7 2.1314 -11.2009 -6.9736 25 14 4.3971 -10.0025 -5.9366 26 1 4.7634 -10.7286 -4.6940 27 1 5.1612 -10.5621 -7.0804 28 1 4.7215 -8.5617 -5.7821 29 1 -0.3634 0.0032 1.0276 30 1 -0.3634 0.8884 -0.5166 31 1 -0.3634 -0.8916 -0.5110 32 1 4.4098 1.3410 -0.0123 33 1 4.4775 -1.2832 -0.0087 34 1 0.9326 -2.5761 0.6024 35 1 2.6187 -3.1229 0.4397 36 1 2.4682 -2.8549 -2.0208 37 1 0.7821 -2.3081 -1.8581 38 1 0.1776 -4.4812 -0.8272 39 1 1.8639 -5.0274 -0.9902 40 1 1.7121 -4.7590 -3.4510 41 1 0.0259 -4.2128 -3.2872 42 1 0.2779 -6.7214 -2.0136 43 1 0.3541 -8.9156 -3.5761 44 1 -1.3321 -8.3696 -3.4117 45 1 -2.7856 -8.2880 -5.3048 46 1 -3.2493 -9.0078 -7.6110 47 1 -1.4354 -9.8557 -9.0409 48 1 0.8594 -9.9919 -8.1763 49 1 2.7589 -11.8430 -7.3409 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777405888.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:49:02 Heat of formation + Delta-G solvation = 22.383592 kcal Electronic energy + Delta-G solvation = -28034.917789 eV Core-core repulsion = 24154.809164 eV Total energy + Delta-G solvation = -3880.108625 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.37747 -39.28380 -37.45533 -36.57181 -34.54580 -33.61664 -32.36049 -32.03733 -31.56619 -29.45391 -28.50241 -27.16851 -26.54734 -25.03022 -23.77399 -21.80981 -21.65321 -20.93225 -20.52887 -19.98527 -19.26703 -17.39606 -17.15970 -16.30353 -16.25513 -16.08866 -15.56389 -15.30160 -14.99097 -14.49844 -14.44738 -14.16050 -13.72523 -13.63637 -13.46464 -13.34890 -13.07828 -12.97924 -12.75594 -12.64720 -12.58400 -12.28404 -11.98047 -11.73032 -11.62883 -11.56662 -11.22362 -11.12348 -10.98157 -10.95475 -10.70178 -10.40032 -10.23011 -9.90336 -9.48014 -9.37985 -9.19226 -9.14458 -8.75958 -8.62708 -7.30360 -7.28428 -6.73247 -4.33862 1.73808 2.42083 2.78502 2.88439 2.97296 3.05693 3.10573 3.26780 3.32998 3.59883 3.93070 4.13407 4.18517 4.29025 4.44969 4.65500 4.67101 4.69609 4.94687 4.95549 4.99991 5.12890 5.16920 5.30304 5.34329 5.42120 5.48419 5.55971 5.66542 5.78415 5.83935 5.91796 6.01069 6.03669 6.16668 6.29058 6.42970 6.48838 6.51862 6.73904 6.80962 6.88785 7.08921 7.30464 7.43170 7.64690 7.83709 7.86890 7.95426 8.08087 8.14010 8.32191 8.65368 8.84781 8.92261 9.02389 10.20892 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.013562 B = 0.002047 C = 0.001846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.093319 B =13673.504829 C =15166.071588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.204 3.796 3 N -0.495 5.495 4 C -0.030 4.030 5 C -0.058 4.058 6 N -0.455 5.455 7 C 0.104 3.896 8 C -0.133 4.133 9 C -0.127 4.127 10 C 0.121 3.879 11 N -0.748 5.748 12 C 0.513 3.487 13 O -0.520 6.520 14 C -0.070 4.070 15 C -0.182 4.182 16 C -0.081 4.081 17 C -0.240 4.240 18 C -0.107 4.107 19 C -0.159 4.159 20 C 0.128 3.872 21 C -0.456 4.456 22 H 0.073 0.927 23 C 0.076 3.924 24 N -0.795 5.795 25 Si 0.902 3.098 26 H -0.270 1.270 27 H -0.276 1.276 28 H -0.262 1.262 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.074 0.926 32 H 0.169 0.831 33 H 0.173 0.827 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.064 0.936 41 H 0.062 0.938 42 H 0.395 0.605 43 H 0.096 0.904 44 H 0.075 0.925 45 H 0.084 0.916 46 H 0.085 0.915 47 H 0.086 0.914 48 H 0.117 0.883 49 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.498 12.817 16.560 20.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.058 4.058 3 N -0.214 5.214 4 C -0.178 4.178 5 C -0.191 4.191 6 N -0.138 5.138 7 C -0.019 4.019 8 C -0.172 4.172 9 C -0.165 4.165 10 C -0.003 4.003 11 N -0.403 5.403 12 C 0.301 3.699 13 O -0.393 6.393 14 C -0.110 4.110 15 C -0.184 4.184 16 C -0.100 4.100 17 C -0.259 4.259 18 C -0.126 4.126 19 C -0.178 4.178 20 C 0.126 3.874 21 C -0.486 4.486 22 H 0.091 0.909 23 C -0.141 4.141 24 N -0.421 5.421 25 Si 0.726 3.274 26 H -0.196 1.196 27 H -0.201 1.201 28 H -0.186 1.186 29 H 0.097 0.903 30 H 0.109 0.891 31 H 0.093 0.907 32 H 0.186 0.814 33 H 0.191 0.809 34 H 0.112 0.888 35 H 0.113 0.887 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.229 0.771 43 H 0.114 0.886 44 H 0.094 0.906 45 H 0.102 0.898 46 H 0.103 0.897 47 H 0.104 0.896 48 H 0.135 0.865 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.334 13.707 15.648 20.805 hybrid contribution 1.359 -1.096 0.461 1.806 sum 1.693 12.611 16.108 20.528 Atomic orbital electron populations 1.20213 0.85027 1.04209 1.03443 1.23324 0.95744 0.81422 1.05318 1.70250 1.02340 1.28417 1.20436 1.22289 0.94787 0.92844 1.07888 1.22728 0.87121 0.96931 1.12283 1.45464 1.06511 1.07416 1.54393 1.21952 1.02022 0.79130 0.98779 1.21885 1.03135 0.96659 0.95483 1.21699 1.02117 0.95280 0.97412 1.21163 1.00157 0.83307 0.95652 1.46129 1.71212 1.13147 1.09772 1.21266 0.76292 0.89590 0.82762 1.90688 1.50924 1.66587 1.31126 1.20262 1.01336 0.91433 0.97970 1.19059 0.93397 1.12169 0.93740 1.20295 0.95048 0.99508 0.95128 1.20311 0.97328 1.12422 0.95832 1.20677 0.94130 1.00220 0.97536 1.21296 0.95330 1.05112 0.96098 1.17340 0.91812 0.87783 0.90461 1.19441 0.95192 1.16149 1.17789 0.90874 1.25876 1.01032 0.93804 0.93367 1.69818 1.36831 1.09016 1.26440 0.86416 0.82411 0.79777 0.78746 1.19568 1.20072 1.18605 0.90266 0.89135 0.90685 0.81414 0.80939 0.88840 0.88722 0.90602 0.90669 0.90888 0.90819 0.91797 0.91922 0.77131 0.88605 0.90644 0.89788 0.89664 0.89579 0.86527 0.90978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.45 10.04 36.01 0.36 -0.09 16 2 C 0.20 2.00 7.90 -155.42 -1.23 0.78 16 3 N -0.50 -6.01 11.25 -10.82 -0.12 -6.13 16 4 C -0.03 -0.31 11.87 -17.81 -0.21 -0.52 16 5 C -0.06 -0.50 11.58 -16.56 -0.19 -0.69 16 6 N -0.45 -3.78 2.75 -113.91 -0.31 -4.10 16 7 C 0.10 0.56 5.68 -4.04 -0.02 0.54 16 8 C -0.13 -0.85 5.54 -26.73 -0.15 -1.00 16 9 C -0.13 -0.84 5.33 -26.73 -0.14 -0.98 16 10 C 0.12 1.39 5.67 -4.04 -0.02 1.37 16 11 N -0.75 -9.90 5.56 -60.29 -0.33 -10.23 16 12 C 0.51 9.68 7.44 -10.99 -0.08 9.59 16 13 O -0.52 -12.35 16.03 5.56 0.09 -12.26 16 14 C -0.07 -1.34 5.18 -29.03 -0.15 -1.49 16 15 C -0.18 -4.35 4.43 -103.91 -0.46 -4.81 16 16 C -0.08 -1.88 9.66 -39.66 -0.38 -2.26 16 17 C -0.24 -5.59 10.05 -39.29 -0.39 -5.99 16 18 C -0.11 -2.62 10.02 -39.66 -0.40 -3.02 16 19 C -0.16 -4.26 8.69 -38.87 -0.34 -4.60 16 20 C 0.13 3.43 5.56 -106.82 -0.59 2.84 16 21 C -0.46 -11.93 8.14 -37.75 -0.31 -12.24 16 22 H 0.07 1.86 6.67 -52.49 -0.35 1.51 16 23 C 0.08 1.91 5.16 -17.35 -0.09 1.82 16 24 N -0.80 -20.47 10.96 55.55 0.61 -19.86 16 25 Si 0.90 18.71 29.59 -169.99 -5.03 13.68 16 26 H -0.27 -5.42 7.11 56.52 0.40 -5.01 16 27 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 28 H -0.26 -5.51 7.11 56.52 0.40 -5.11 16 29 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.37 7.33 -51.93 -0.38 -0.01 16 32 H 0.17 1.32 8.06 -52.49 -0.42 0.89 16 33 H 0.17 0.99 8.06 -52.49 -0.42 0.57 16 34 H 0.09 0.37 7.94 -51.93 -0.41 -0.04 16 35 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.52 7.64 -51.93 -0.40 0.13 16 38 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 41 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.40 3.86 8.47 -40.82 -0.35 3.51 16 43 H 0.10 1.79 7.08 -51.93 -0.37 1.42 16 44 H 0.08 1.19 8.05 -51.93 -0.42 0.77 16 45 H 0.08 1.69 8.06 -52.49 -0.42 1.27 16 46 H 0.09 1.76 8.06 -52.48 -0.42 1.34 16 47 H 0.09 1.88 8.06 -52.49 -0.42 1.46 16 48 H 0.12 3.21 6.20 -52.49 -0.33 2.88 16 49 H 0.28 6.56 8.30 -40.82 -0.34 6.22 16 LS Contribution 408.50 15.07 6.16 6.16 Total: -1.00 -34.51 408.50 -11.38 -45.89 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: -7.63 Total: 7.62 kcal Atomic # 6 Polarization: -15.96 SS G_CDS: -4.80 Total: -20.76 kcal Atomic # 7 Polarization: -40.16 SS G_CDS: -0.16 Total: -40.32 kcal Atomic # 8 Polarization: -12.35 SS G_CDS: 0.09 Total: -12.26 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -5.03 Total: 13.68 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -34.51 -11.38 -45.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777405888.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.272 kcal (2) G-P(sol) polarization free energy of solvation -34.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.889 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds