Wall clock time and date at job start Wed Apr 1 2020 00:49:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30506 * 125.65016 * 2 1 4 4 C 1.34129 * 109.25137 * 180.29490 * 3 2 1 5 5 C 1.34665 * 108.02059 * 359.72019 * 4 3 2 6 6 N 1.35038 * 125.64911 * 179.82464 * 2 1 3 7 7 C 1.46501 * 126.39701 * 359.97003 * 6 2 1 8 8 C 1.53000 * 109.46960 * 84.71953 * 7 6 2 9 9 C 1.53003 * 109.47100 * 179.97438 * 8 7 6 10 10 C 1.52998 * 109.46738 * 179.97438 * 9 8 7 11 11 N 1.46502 * 109.46968 * 179.97438 * 10 9 8 12 12 C 1.34779 * 120.00144 * 179.97438 * 11 10 9 13 13 O 1.21281 * 120.00217 * 0.02562 * 12 11 10 14 14 C 1.50698 * 119.99923 * 180.02562 * 12 11 10 15 15 C 1.50703 * 109.47057 * 180.02562 * 14 12 11 16 16 C 1.37633 * 120.12881 * 264.99817 * 15 14 12 17 17 C 1.38610 * 120.25034 * 179.97438 * 16 15 14 18 18 C 1.38660 * 120.50091 * 0.02831 * 17 16 15 19 19 C 1.37593 * 120.24537 * 0.02562 * 18 17 16 20 20 C 1.40697 * 120.12503 * 84.72661 * 15 14 12 21 21 C 1.41394 * 120.25005 * 359.97438 * 20 15 14 22 22 H 1.08002 * 119.99367 * 333.90491 * 21 20 15 23 23 C 1.39936 * 120.00329 * 153.89889 * 21 20 15 24 24 N 1.30823 * 120.00218 * 343.71110 * 23 21 20 25 25 Si 1.86806 * 120.00088 * 163.71342 * 23 21 20 26 26 H 1.48505 * 109.47079 * 90.00193 * 25 23 21 27 27 H 1.48502 * 109.47027 * 209.99966 * 25 23 21 28 28 H 1.48497 * 109.46857 * 330.00048 * 25 23 21 29 29 H 1.09000 * 109.47305 * 270.17760 * 1 2 3 30 30 H 1.09003 * 109.47421 * 30.17700 * 1 2 3 31 31 H 1.08996 * 109.47360 * 150.18083 * 1 2 3 32 32 H 1.07997 * 125.98327 * 179.72893 * 4 3 2 33 33 H 1.08000 * 126.58851 * 179.97438 * 5 4 3 34 34 H 1.08998 * 109.47548 * 324.72110 * 7 6 2 35 35 H 1.09000 * 109.47084 * 204.71388 * 7 6 2 36 36 H 1.09004 * 109.47256 * 59.99716 * 8 7 6 37 37 H 1.09002 * 109.47247 * 299.99823 * 8 7 6 38 38 H 1.08995 * 109.46929 * 60.00282 * 9 8 7 39 39 H 1.09000 * 109.47070 * 299.99511 * 9 8 7 40 40 H 1.09002 * 109.47513 * 60.00453 * 10 9 8 41 41 H 1.09002 * 109.47490 * 299.99818 * 10 9 8 42 42 H 0.97000 * 119.99916 * 359.97438 * 11 10 9 43 43 H 1.09000 * 109.47002 * 299.99686 * 14 12 11 44 44 H 1.08998 * 109.47482 * 60.00317 * 14 12 11 45 45 H 1.08002 * 119.87475 * 0.02562 * 16 15 14 46 46 H 1.08004 * 119.74981 * 180.02562 * 17 16 15 47 47 H 1.07996 * 119.87334 * 179.97438 * 18 17 16 48 48 H 1.07999 * 120.12482 * 179.97438 * 19 18 17 49 49 H 0.97001 * 120.00340 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2676 1.0605 0.0000 4 6 3.5543 0.6818 -0.0065 5 6 3.5925 -0.6643 -0.0045 6 7 2.2940 -1.0973 0.0034 7 6 1.8424 -2.4910 0.0082 8 6 1.5583 -2.9400 -1.4265 9 6 1.0873 -4.3957 -1.4215 10 6 0.8026 -4.8445 -2.8562 11 7 0.3522 -6.2385 -2.8516 12 6 0.0410 -6.8501 -4.0116 13 8 0.1343 -6.2465 -5.0594 14 6 -0.4229 -8.2839 -4.0067 15 6 -0.7032 -8.7260 -5.4199 16 6 -1.9821 -8.6588 -5.9239 17 6 -2.2427 -9.0643 -7.2235 18 6 -1.2209 -9.5421 -8.0300 19 6 0.0651 -9.6191 -7.5466 20 6 0.3426 -9.2037 -6.2309 21 6 1.6616 -9.2714 -5.7260 22 1 1.9703 -8.6080 -4.9316 23 6 2.5668 -10.1979 -6.2554 24 7 2.1314 -11.2009 -6.9736 25 14 4.3971 -10.0025 -5.9366 26 1 4.7634 -10.7286 -4.6940 27 1 5.1612 -10.5621 -7.0804 28 1 4.7215 -8.5617 -5.7821 29 1 -0.3634 0.0032 1.0276 30 1 -0.3634 0.8884 -0.5166 31 1 -0.3634 -0.8916 -0.5110 32 1 4.4098 1.3410 -0.0123 33 1 4.4775 -1.2832 -0.0087 34 1 0.9326 -2.5761 0.6024 35 1 2.6187 -3.1229 0.4397 36 1 2.4682 -2.8549 -2.0208 37 1 0.7821 -2.3081 -1.8581 38 1 0.1776 -4.4812 -0.8272 39 1 1.8639 -5.0274 -0.9902 40 1 1.7121 -4.7590 -3.4510 41 1 0.0259 -4.2128 -3.2872 42 1 0.2779 -6.7214 -2.0136 43 1 0.3541 -8.9156 -3.5761 44 1 -1.3321 -8.3696 -3.4117 45 1 -2.7856 -8.2880 -5.3048 46 1 -3.2493 -9.0078 -7.6110 47 1 -1.4354 -9.8557 -9.0409 48 1 0.8594 -9.9919 -8.1763 49 1 2.7589 -11.8430 -7.3409 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777405888.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:49:01 Heat of formation + Delta-G solvation = 2.630555 kcal Electronic energy + Delta-G solvation = -28035.774345 eV Core-core repulsion = 24154.809164 eV Total energy + Delta-G solvation = -3880.965180 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.01162 -40.75468 -39.15100 -37.38946 -35.54238 -35.48746 -33.59257 -32.90775 -32.59187 -31.33716 -29.52970 -28.13880 -27.61889 -26.79523 -24.62017 -22.81892 -22.48246 -22.30687 -22.06641 -20.83110 -20.59886 -19.06454 -18.05380 -17.61305 -17.35204 -17.02334 -16.86708 -16.38891 -16.13424 -16.09036 -15.43939 -15.34425 -15.01710 -14.75227 -14.60769 -14.37435 -14.17647 -13.93044 -13.85783 -13.55480 -13.36691 -13.31364 -13.19005 -12.93282 -12.84880 -12.76416 -12.72819 -12.50130 -12.47581 -12.30989 -12.13346 -11.68307 -11.31612 -11.20902 -11.01584 -10.94158 -10.77668 -10.52951 -9.98559 -9.28026 -9.21995 -9.15273 -8.58934 -6.28676 1.00063 1.10226 1.14347 1.35466 1.46826 1.53712 1.86697 1.88092 2.17441 2.19675 2.43190 2.79585 3.62151 3.69411 3.74309 3.77144 3.90728 4.12003 4.15679 4.21917 4.34271 4.42150 4.46183 4.50535 4.50775 4.54365 4.63613 4.70626 4.70959 4.72205 4.73325 4.82835 4.85980 4.96135 5.06477 5.09740 5.16273 5.20724 5.28711 5.37459 5.40224 5.55753 5.60003 5.78640 5.85224 6.04614 6.17688 6.22152 6.30789 6.42633 6.70275 6.77640 6.99904 7.12373 7.16717 7.49665 8.37485 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.013562 B = 0.002047 C = 0.001846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.093319 B =13673.504829 C =15166.071588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.190 3.810 3 N -0.541 5.541 4 C -0.061 4.061 5 C -0.055 4.055 6 N -0.455 5.455 7 C 0.104 3.896 8 C -0.126 4.126 9 C -0.110 4.110 10 C 0.118 3.882 11 N -0.723 5.723 12 C 0.514 3.486 13 O -0.579 6.579 14 C -0.069 4.069 15 C -0.188 4.188 16 C -0.092 4.092 17 C -0.244 4.244 18 C -0.118 4.118 19 C -0.195 4.195 20 C 0.094 3.906 21 C -0.481 4.481 22 H 0.072 0.928 23 C 0.034 3.966 24 N -0.827 5.827 25 Si 0.972 3.028 26 H -0.253 1.253 27 H -0.270 1.270 28 H -0.268 1.268 29 H 0.093 0.907 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.178 0.822 33 H 0.200 0.800 34 H 0.116 0.884 35 H 0.114 0.886 36 H 0.059 0.941 37 H 0.067 0.933 38 H 0.099 0.901 39 H 0.089 0.911 40 H 0.039 0.961 41 H 0.052 0.948 42 H 0.417 0.583 43 H 0.098 0.902 44 H 0.115 0.885 45 H 0.118 0.882 46 H 0.115 0.885 47 H 0.104 0.896 48 H 0.096 0.904 49 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.058 12.544 19.335 23.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.072 4.072 3 N -0.261 5.261 4 C -0.208 4.208 5 C -0.188 4.188 6 N -0.137 5.137 7 C -0.017 4.017 8 C -0.165 4.165 9 C -0.148 4.148 10 C -0.006 4.006 11 N -0.378 5.378 12 C 0.302 3.698 13 O -0.458 6.458 14 C -0.109 4.109 15 C -0.190 4.190 16 C -0.110 4.110 17 C -0.263 4.263 18 C -0.137 4.137 19 C -0.214 4.214 20 C 0.092 3.908 21 C -0.511 4.511 22 H 0.090 0.910 23 C -0.180 4.180 24 N -0.454 5.454 25 Si 0.793 3.207 26 H -0.177 1.177 27 H -0.195 1.195 28 H -0.193 1.193 29 H 0.112 0.888 30 H 0.103 0.897 31 H 0.110 0.890 32 H 0.195 0.805 33 H 0.217 0.783 34 H 0.134 0.866 35 H 0.132 0.868 36 H 0.078 0.922 37 H 0.086 0.914 38 H 0.117 0.883 39 H 0.108 0.892 40 H 0.057 0.943 41 H 0.070 0.930 42 H 0.254 0.746 43 H 0.116 0.884 44 H 0.133 0.867 45 H 0.136 0.864 46 H 0.133 0.867 47 H 0.122 0.878 48 H 0.114 0.886 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.117 13.415 18.491 22.845 hybrid contribution 1.390 -0.980 -0.408 1.749 sum 1.273 12.435 18.084 21.983 Atomic orbital electron populations 1.20327 0.83091 1.04790 1.04541 1.23884 0.96987 0.81529 1.04816 1.70197 1.03507 1.30265 1.22147 1.22648 0.94771 0.94185 1.09214 1.23163 0.88144 0.96726 1.10770 1.45653 1.06223 1.08239 1.53623 1.22141 1.03739 0.77723 0.98147 1.21781 1.02149 0.96453 0.96145 1.21586 1.03891 0.95251 0.94072 1.21294 0.98585 0.81917 0.98778 1.45863 1.68948 1.13858 1.09092 1.21169 0.75968 0.89411 0.83297 1.90671 1.53834 1.67780 1.33485 1.20288 1.03328 0.91597 0.95685 1.19591 0.93165 1.10452 0.95806 1.20751 0.95770 0.98912 0.95562 1.20731 0.98319 1.11208 0.96037 1.20946 0.93759 1.00238 0.98738 1.21306 0.95955 1.07506 0.96679 1.17762 0.93176 0.88911 0.90983 1.19596 0.95901 1.16894 1.18699 0.91003 1.26688 1.05300 0.93079 0.92925 1.69885 1.38469 1.09728 1.27274 0.85362 0.76701 0.79279 0.79342 1.17703 1.19484 1.19258 0.88812 0.89704 0.88955 0.80504 0.78333 0.86610 0.86823 0.92235 0.91385 0.88265 0.89250 0.94264 0.92985 0.74628 0.88377 0.86703 0.86402 0.86723 0.87809 0.88631 0.90409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.78 10.04 71.24 0.72 -0.06 16 2 C 0.19 3.54 7.90 138.13 1.09 4.64 16 3 N -0.54 -13.21 11.25 -188.14 -2.12 -15.32 16 4 C -0.06 -1.24 11.87 83.52 0.99 -0.25 16 5 C -0.05 -0.86 11.58 83.09 0.96 0.10 16 6 N -0.45 -6.66 2.75 -514.29 -1.41 -8.07 16 7 C 0.10 0.75 5.68 86.38 0.49 1.25 16 8 C -0.13 -1.29 5.54 30.60 0.17 -1.12 16 9 C -0.11 -1.05 5.33 30.59 0.16 -0.89 16 10 C 0.12 2.50 5.67 86.38 0.49 2.99 16 11 N -0.72 -17.41 5.56 -463.05 -2.57 -19.99 16 12 C 0.51 18.78 7.44 87.66 0.65 19.44 16 13 O -0.58 -27.83 16.03 -3.03 -0.05 -27.88 16 14 C -0.07 -2.53 5.18 29.10 0.15 -2.38 16 15 C -0.19 -8.96 4.43 -19.41 -0.09 -9.04 16 16 C -0.09 -4.10 9.66 22.22 0.21 -3.88 16 17 C -0.24 -11.12 10.05 22.46 0.23 -10.90 16 18 C -0.12 -5.88 10.02 22.22 0.22 -5.66 16 19 C -0.19 -10.86 8.69 22.73 0.20 -10.66 16 20 C 0.09 5.15 5.56 -21.29 -0.12 5.03 16 21 C -0.48 -25.81 8.14 23.46 0.19 -25.62 16 22 H 0.07 3.72 6.67 -2.91 -0.02 3.70 16 23 C 0.03 1.75 5.16 85.25 0.44 2.19 16 24 N -0.83 -43.85 10.96 21.82 0.24 -43.61 16 25 Si 0.97 38.70 29.59 68.60 2.03 40.73 16 26 H -0.25 -9.28 7.11 99.48 0.71 -8.58 16 27 H -0.27 -10.40 7.11 99.48 0.71 -9.70 16 28 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 29 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.09 0.68 7.33 -2.39 -0.02 0.66 16 32 H 0.18 2.86 8.06 -2.91 -0.02 2.84 16 33 H 0.20 1.83 8.06 -2.91 -0.02 1.80 16 34 H 0.12 0.38 7.94 -2.39 -0.02 0.36 16 35 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16 36 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 37 H 0.07 0.81 7.64 -2.39 -0.02 0.79 16 38 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 39 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 40 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.42 6.52 8.47 -92.71 -0.79 5.74 16 43 H 0.10 3.52 7.08 -2.39 -0.02 3.51 16 44 H 0.11 3.20 8.05 -2.39 -0.02 3.18 16 45 H 0.12 4.37 8.06 -2.91 -0.02 4.34 16 46 H 0.11 4.46 8.06 -2.91 -0.02 4.43 16 47 H 0.10 4.59 8.06 -2.91 -0.02 4.57 16 48 H 0.10 5.58 6.20 -2.91 -0.02 5.56 16 49 H 0.29 13.74 8.30 -92.71 -0.77 12.97 16 Total: -1.00 -79.97 408.50 3.44 -76.53 By element: Atomic # 1 Polarization: 32.28 SS G_CDS: 0.17 Total: 32.45 kcal Atomic # 6 Polarization: -42.01 SS G_CDS: 7.16 Total: -34.84 kcal Atomic # 7 Polarization: -81.12 SS G_CDS: -5.87 Total: -86.99 kcal Atomic # 8 Polarization: -27.83 SS G_CDS: -0.05 Total: -27.88 kcal Atomic # 14 Polarization: 38.70 SS G_CDS: 2.03 Total: 40.73 kcal Total: -79.97 3.44 -76.53 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777405888.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.158 kcal (2) G-P(sol) polarization free energy of solvation -79.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.528 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds