Wall clock time and date at job start Wed Apr 1 2020 01:14:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.53006 * 109.47226 * 6.38569 * 3 2 1 5 5 H 1.08997 * 109.46829 * 55.00017 * 4 3 2 6 6 N 1.46500 * 109.47026 * 295.00322 * 4 3 2 7 7 C 1.34777 * 120.00425 * 84.99830 * 6 4 3 8 8 O 1.21587 * 119.99795 * 355.49935 * 7 6 4 9 9 N 1.34777 * 119.99975 * 175.50130 * 7 6 4 10 10 C 1.47077 * 120.87786 * 184.71559 * 9 7 6 11 11 C 1.53694 * 108.27613 * 128.75173 * 10 9 7 12 12 N 1.46904 * 109.25607 * 54.08354 * 11 10 9 13 13 C 1.46901 * 111.00079 * 172.60976 * 12 11 10 14 14 C 1.50705 * 109.46733 * 294.29987 * 13 12 11 15 15 H 1.07999 * 119.99820 * 0.02562 * 14 13 12 16 16 C 1.37872 * 119.99811 * 180.02562 * 14 13 12 17 17 N 1.31517 * 119.99919 * 179.97438 * 16 14 13 18 18 Si 1.86804 * 120.00064 * 359.97438 * 16 14 13 19 19 H 1.48494 * 109.46981 * 90.00271 * 18 16 14 20 20 H 1.48499 * 109.47005 * 210.00267 * 18 16 14 21 21 H 1.48493 * 109.46953 * 330.00134 * 18 16 14 22 22 C 1.46902 * 111.26647 * 296.75683 * 12 11 10 23 23 C 1.47080 * 120.88103 * 4.99223 * 9 7 6 24 24 C 1.50703 * 109.47135 * 174.99811 * 4 3 2 25 25 C 1.38233 * 119.99744 * 79.87099 * 24 4 3 26 26 C 1.38230 * 119.99911 * 180.02562 * 25 24 4 27 27 C 1.38239 * 120.00218 * 0.05982 * 26 25 24 28 28 C 1.38237 * 119.99773 * 0.02562 * 27 26 25 29 29 C 1.38234 * 120.00010 * 259.99701 * 24 4 3 30 30 H 4.44650 * 5.63237 * 179.97438 * 4 1 2 31 31 H 1.09003 * 109.47119 * 246.38690 * 3 2 1 32 32 H 1.08993 * 109.47377 * 126.38605 * 3 2 1 33 33 H 0.97002 * 119.99744 * 264.99907 * 6 4 3 34 34 H 1.08994 * 109.63095 * 248.52310 * 10 9 7 35 35 H 1.09006 * 109.63131 * 9.10604 * 10 9 7 36 36 H 1.08999 * 109.64964 * 294.07845 * 11 10 9 37 37 H 1.09001 * 109.44643 * 173.96048 * 11 10 9 38 38 H 1.09000 * 109.47345 * 54.29500 * 13 12 11 39 39 H 1.09001 * 109.47046 * 174.30479 * 13 12 11 40 40 H 0.97008 * 119.99988 * 179.97438 * 17 16 14 41 41 H 1.09008 * 109.49265 * 303.14176 * 22 12 11 42 42 H 1.08996 * 109.48922 * 183.06809 * 22 12 11 43 43 H 1.08994 * 109.62850 * 350.89829 * 23 9 7 44 44 H 1.09000 * 109.62673 * 111.47892 * 23 9 7 45 45 H 1.08000 * 120.00357 * 0.10534 * 25 24 4 46 46 H 1.08003 * 120.00252 * 180.34611 * 26 25 24 47 47 H 1.07995 * 120.00423 * 179.97438 * 27 26 25 48 48 H 1.08000 * 119.99899 * 179.97438 * 28 27 26 49 49 H 1.07999 * 119.99527 * 359.97438 * 29 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 6 3.1566 -1.4327 -0.1604 5 1 2.7222 -1.8749 -1.0570 6 7 2.7694 -2.2230 1.0107 7 6 1.5523 -2.7998 1.0621 8 8 0.7458 -2.5975 0.1751 9 7 1.2293 -3.6008 2.0968 10 6 -0.0526 -4.3213 2.1221 11 6 0.2336 -5.8043 2.4069 12 7 1.0328 -5.9164 3.6345 13 6 1.1810 -7.3206 4.0398 14 6 -0.1652 -7.8761 4.4276 15 1 -1.0430 -7.2489 4.3776 16 6 -0.2761 -9.1850 4.8463 17 7 -1.4508 -9.6697 5.1853 18 14 1.2421 -10.2700 4.9322 19 1 1.8589 -10.1526 6.2779 20 1 0.8555 -11.6826 4.6865 21 1 2.2186 -9.8374 3.9006 22 6 2.3439 -5.2726 3.4773 23 6 2.1468 -3.7727 3.2334 24 6 4.6586 -1.4200 -0.2838 25 6 5.4439 -1.3009 0.8476 26 6 6.8215 -1.2887 0.7345 27 6 7.4138 -1.3944 -0.5101 28 6 6.6284 -1.5118 -1.6416 29 6 5.2508 -1.5249 -1.5284 30 1 -1.0498 -0.0003 0.0002 31 1 3.0091 0.4125 0.9416 32 1 3.0090 0.6104 -0.8272 33 1 3.3889 -2.3312 1.7492 34 1 -0.6881 -3.9106 2.9066 35 1 -0.5478 -4.2216 1.1562 36 1 0.7853 -6.2379 1.5729 37 1 -0.7084 -6.3373 2.5363 38 1 1.5865 -7.8978 3.2088 39 1 1.8589 -7.3834 4.8910 40 1 -1.5289 -10.5908 5.4795 41 1 2.8662 -5.7137 2.6283 42 1 2.9321 -5.4198 4.3830 43 1 3.1064 -3.3101 3.0026 44 1 1.7187 -3.3102 4.1228 45 1 4.9812 -1.2186 1.8200 46 1 7.4352 -1.2012 1.6188 47 1 8.4901 -1.3845 -0.5986 48 1 7.0912 -1.5940 -2.6140 49 1 4.6371 -1.6164 -2.4123 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000868445833.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:14:24 Heat of formation + Delta-G solvation = 79.035047 kcal Electronic energy + Delta-G solvation = -29533.256145 eV Core-core repulsion = 25655.604112 eV Total energy + Delta-G solvation = -3877.652033 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.63128 -39.52148 -37.82804 -36.00234 -34.48475 -33.18065 -32.35716 -31.77006 -31.24969 -30.56924 -29.09431 -28.42646 -25.73073 -24.53273 -23.30358 -23.06854 -21.94543 -21.23001 -20.42283 -19.43066 -18.44041 -17.77930 -17.10700 -16.77335 -16.42865 -15.63257 -15.55220 -15.11111 -14.81063 -14.57369 -14.48288 -14.30344 -14.14074 -14.00165 -13.78687 -13.57214 -13.46841 -13.22745 -12.95125 -12.65598 -12.49442 -12.28977 -12.06765 -11.60285 -11.48791 -11.33175 -11.20001 -10.93597 -10.77833 -10.57046 -10.47580 -10.33270 -10.03550 -9.93768 -9.78284 -9.33597 -9.30195 -9.21732 -8.89748 -8.60677 -8.35134 -7.45772 -6.08758 -4.06685 0.91217 1.01927 2.69576 3.01296 3.07063 3.25240 3.33188 3.34474 3.38880 3.44229 3.90281 4.18639 4.38370 4.48469 4.60277 4.62190 4.65326 4.76950 5.01023 5.04020 5.12819 5.13142 5.20490 5.21299 5.30109 5.35300 5.41034 5.54271 5.59922 5.61347 5.70668 5.77799 5.88338 5.98392 6.05592 6.08984 6.13965 6.14741 6.16637 6.37917 6.47891 6.51616 6.58946 6.62249 6.81007 6.93073 7.06376 7.52526 7.79869 7.90727 7.95244 8.03737 8.60119 8.73404 8.99147 9.52539 11.04142 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.013375 B = 0.002687 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.954403 B =10419.099197 C =11958.201489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.193 4.193 3 C -0.012 4.012 4 C 0.212 3.788 5 H 0.099 0.901 6 N -0.745 5.745 7 C 0.707 3.293 8 O -0.579 6.579 9 N -0.626 5.626 10 C 0.136 3.864 11 C 0.050 3.950 12 N -0.525 5.525 13 C 0.163 3.837 14 C -0.511 4.511 15 H 0.082 0.918 16 C 0.069 3.931 17 N -0.898 5.898 18 Si 0.875 3.125 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.269 1.269 22 C 0.038 3.962 23 C 0.120 3.880 24 C -0.091 4.091 25 C -0.112 4.112 26 C -0.116 4.116 27 C -0.119 4.119 28 C -0.117 4.117 29 C -0.105 4.105 30 H 0.208 0.792 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.393 0.607 34 H 0.070 0.930 35 H 0.089 0.911 36 H 0.024 0.976 37 H 0.102 0.898 38 H -0.012 1.012 39 H 0.025 0.975 40 H 0.264 0.736 41 H 0.027 0.973 42 H 0.080 0.920 43 H 0.067 0.933 44 H 0.076 0.924 45 H 0.121 0.879 46 H 0.124 0.876 47 H 0.122 0.878 48 H 0.124 0.876 49 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.848 20.614 -11.018 28.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.193 4.193 3 C -0.050 4.050 4 C 0.106 3.894 5 H 0.116 0.884 6 N -0.404 5.404 7 C 0.409 3.591 8 O -0.456 6.456 9 N -0.363 5.363 10 C 0.013 3.987 11 C -0.079 4.079 12 N -0.250 5.250 13 C 0.037 3.963 14 C -0.549 4.549 15 H 0.100 0.900 16 C -0.133 4.133 17 N -0.537 5.537 18 Si 0.702 3.298 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.194 1.194 22 C -0.091 4.091 23 C -0.004 4.004 24 C -0.092 4.092 25 C -0.130 4.130 26 C -0.134 4.134 27 C -0.137 4.137 28 C -0.135 4.135 29 C -0.123 4.123 30 H 0.225 0.775 31 H 0.102 0.898 32 H 0.109 0.891 33 H 0.231 0.769 34 H 0.089 0.911 35 H 0.108 0.892 36 H 0.043 0.957 37 H 0.120 0.880 38 H 0.006 0.994 39 H 0.043 0.957 40 H 0.074 0.926 41 H 0.045 0.955 42 H 0.098 0.902 43 H 0.086 0.914 44 H 0.094 0.906 45 H 0.139 0.861 46 H 0.142 0.858 47 H 0.140 0.860 48 H 0.142 0.858 49 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 15.895 20.805 -11.242 28.494 hybrid contribution 1.448 -1.319 0.012 1.959 sum 17.343 19.487 -11.230 28.401 Atomic orbital electron populations 1.24580 0.95665 0.99134 1.00004 1.22406 0.93889 1.01680 1.01355 1.19041 0.86163 0.96593 1.03165 1.19538 0.89273 0.90473 0.90089 0.88353 1.45363 1.16534 1.56459 1.22054 1.15768 0.82071 0.78749 0.82517 1.90932 1.49323 1.65783 1.39549 1.47389 1.20857 1.48118 1.19977 1.21789 0.83398 0.90979 1.02515 1.22496 1.00344 0.94587 0.90449 1.61896 1.12858 1.18868 1.31382 1.20173 0.98534 0.83151 0.94444 1.21011 0.93218 0.96613 1.44097 0.90013 1.24895 0.95709 0.97741 0.94920 1.69893 1.23036 1.15605 1.45197 0.86869 0.83887 0.80181 0.78850 1.20130 1.21176 1.19373 1.22427 0.92893 0.93497 1.00328 1.21707 0.92267 0.97008 0.89416 1.19898 0.94356 1.00957 0.93989 1.20947 0.93856 1.00176 0.98031 1.21156 0.94650 0.99799 0.97772 1.21214 0.99995 0.99767 0.92727 1.21166 0.93626 0.99859 0.98820 1.21038 0.95020 0.99408 0.96853 0.77465 0.89824 0.89130 0.76922 0.91123 0.89235 0.95740 0.87988 0.99411 0.95711 0.92611 0.95507 0.90193 0.91449 0.90603 0.86110 0.85798 0.85996 0.85814 0.85631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.37 17.71 29.55 0.52 -1.85 16 2 C -0.19 -2.51 11.13 -37.12 -0.41 -2.93 16 3 C -0.01 -0.11 5.36 -29.52 -0.16 -0.27 16 4 C 0.21 2.14 2.44 -69.08 -0.17 1.97 16 5 H 0.10 1.18 7.51 -51.93 -0.39 0.79 16 6 N -0.75 -8.48 4.90 -59.81 -0.29 -8.77 16 7 C 0.71 10.64 7.72 -86.92 -0.67 9.97 16 8 O -0.58 -10.29 12.32 5.29 0.07 -10.23 16 9 N -0.63 -9.41 3.00 -177.92 -0.53 -9.94 16 10 C 0.14 2.25 6.61 -3.37 -0.02 2.23 16 11 C 0.05 0.96 5.47 -3.46 -0.02 0.94 16 12 N -0.53 -10.54 4.62 -235.46 -1.09 -11.63 16 13 C 0.16 3.85 3.79 -4.97 -0.02 3.83 16 14 C -0.51 -14.18 8.96 -34.44 -0.31 -14.49 16 15 H 0.08 2.46 7.37 -52.49 -0.39 2.07 16 16 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 17 N -0.90 -27.18 13.96 55.43 0.77 -26.40 16 18 Si 0.87 21.19 27.47 -169.99 -4.67 16.52 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 20 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.27 -6.31 6.54 56.52 0.37 -5.94 16 22 C 0.04 0.60 5.62 -3.70 -0.02 0.58 16 23 C 0.12 1.55 6.59 -3.60 -0.02 1.53 16 24 C -0.09 -0.76 4.95 -104.62 -0.52 -1.28 16 25 C -0.11 -0.83 9.06 -39.59 -0.36 -1.19 16 26 C -0.12 -0.78 10.05 -39.58 -0.40 -1.18 16 27 C -0.12 -0.79 10.05 -39.58 -0.40 -1.19 16 28 C -0.12 -0.80 10.05 -39.58 -0.40 -1.20 16 29 C -0.10 -0.81 9.67 -39.58 -0.38 -1.20 16 30 H 0.21 2.32 7.80 -54.10 -0.42 1.89 16 31 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.39 3.70 4.37 -40.82 -0.18 3.52 16 34 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 35 H 0.09 1.50 7.09 -51.93 -0.37 1.14 16 36 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.10 2.15 6.67 -51.93 -0.35 1.80 16 38 H -0.01 -0.29 7.18 -51.93 -0.37 -0.66 16 39 H 0.02 0.58 7.40 -51.93 -0.38 0.20 16 40 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 41 H 0.03 0.44 8.14 -51.92 -0.42 0.02 16 42 H 0.08 1.17 7.99 -51.93 -0.41 0.75 16 43 H 0.07 0.66 5.63 -51.93 -0.29 0.36 16 44 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 45 H 0.12 0.74 6.92 -52.49 -0.36 0.38 16 46 H 0.12 0.61 8.06 -52.48 -0.42 0.19 16 47 H 0.12 0.58 8.06 -52.49 -0.42 0.15 16 48 H 0.12 0.62 8.06 -52.49 -0.42 0.20 16 49 H 0.13 0.84 8.04 -52.49 -0.42 0.42 16 LS Contribution 393.02 15.07 5.92 5.92 Total: -1.00 -33.65 393.02 -10.99 -44.63 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -7.31 Total: 3.73 kcal Atomic # 6 Polarization: 0.01 SS G_CDS: -3.85 Total: -3.84 kcal Atomic # 7 Polarization: -55.60 SS G_CDS: -1.14 Total: -56.74 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: 0.07 Total: -10.23 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.67 Total: 16.52 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.65 -10.99 -44.63 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868445833.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.670 kcal (2) G-P(sol) polarization free energy of solvation -33.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.635 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds