Wall clock time and date at job start Wed Apr 1 2020 01:14:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.53006 * 109.47226 * 6.38569 * 3 2 1 5 5 H 1.08997 * 109.46829 * 55.00017 * 4 3 2 6 6 N 1.46500 * 109.47026 * 295.00322 * 4 3 2 7 7 C 1.34777 * 120.00425 * 84.99830 * 6 4 3 8 8 O 1.21587 * 119.99795 * 355.49935 * 7 6 4 9 9 N 1.34777 * 119.99975 * 175.50130 * 7 6 4 10 10 C 1.47077 * 120.87786 * 184.71559 * 9 7 6 11 11 C 1.53694 * 108.27613 * 128.75173 * 10 9 7 12 12 N 1.46904 * 109.25607 * 54.08354 * 11 10 9 13 13 C 1.46901 * 111.00079 * 172.60976 * 12 11 10 14 14 C 1.50705 * 109.46733 * 294.29987 * 13 12 11 15 15 H 1.07999 * 119.99820 * 0.02562 * 14 13 12 16 16 C 1.37872 * 119.99811 * 180.02562 * 14 13 12 17 17 N 1.31517 * 119.99919 * 179.97438 * 16 14 13 18 18 Si 1.86804 * 120.00064 * 359.97438 * 16 14 13 19 19 H 1.48494 * 109.46981 * 90.00271 * 18 16 14 20 20 H 1.48499 * 109.47005 * 210.00267 * 18 16 14 21 21 H 1.48493 * 109.46953 * 330.00134 * 18 16 14 22 22 C 1.46902 * 111.26647 * 296.75683 * 12 11 10 23 23 C 1.47080 * 120.88103 * 4.99223 * 9 7 6 24 24 C 1.50703 * 109.47135 * 174.99811 * 4 3 2 25 25 C 1.38233 * 119.99744 * 79.87099 * 24 4 3 26 26 C 1.38230 * 119.99911 * 180.02562 * 25 24 4 27 27 C 1.38239 * 120.00218 * 0.05982 * 26 25 24 28 28 C 1.38237 * 119.99773 * 0.02562 * 27 26 25 29 29 C 1.38234 * 120.00010 * 259.99701 * 24 4 3 30 30 H 4.44650 * 5.63237 * 179.97438 * 4 1 2 31 31 H 1.09003 * 109.47119 * 246.38690 * 3 2 1 32 32 H 1.08993 * 109.47377 * 126.38605 * 3 2 1 33 33 H 0.97002 * 119.99744 * 264.99907 * 6 4 3 34 34 H 1.08994 * 109.63095 * 248.52310 * 10 9 7 35 35 H 1.09006 * 109.63131 * 9.10604 * 10 9 7 36 36 H 1.08999 * 109.64964 * 294.07845 * 11 10 9 37 37 H 1.09001 * 109.44643 * 173.96048 * 11 10 9 38 38 H 1.09000 * 109.47345 * 54.29500 * 13 12 11 39 39 H 1.09001 * 109.47046 * 174.30479 * 13 12 11 40 40 H 0.97008 * 119.99988 * 179.97438 * 17 16 14 41 41 H 1.09008 * 109.49265 * 303.14176 * 22 12 11 42 42 H 1.08996 * 109.48922 * 183.06809 * 22 12 11 43 43 H 1.08994 * 109.62850 * 350.89829 * 23 9 7 44 44 H 1.09000 * 109.62673 * 111.47892 * 23 9 7 45 45 H 1.08000 * 120.00357 * 0.10534 * 25 24 4 46 46 H 1.08003 * 120.00252 * 180.34611 * 26 25 24 47 47 H 1.07995 * 120.00423 * 179.97438 * 27 26 25 48 48 H 1.08000 * 119.99899 * 179.97438 * 28 27 26 49 49 H 1.07999 * 119.99527 * 359.97438 * 29 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 6 3.1566 -1.4327 -0.1604 5 1 2.7222 -1.8749 -1.0570 6 7 2.7694 -2.2230 1.0107 7 6 1.5523 -2.7998 1.0621 8 8 0.7458 -2.5975 0.1751 9 7 1.2293 -3.6008 2.0968 10 6 -0.0526 -4.3213 2.1221 11 6 0.2336 -5.8043 2.4069 12 7 1.0328 -5.9164 3.6345 13 6 1.1810 -7.3206 4.0398 14 6 -0.1652 -7.8761 4.4276 15 1 -1.0430 -7.2489 4.3776 16 6 -0.2761 -9.1850 4.8463 17 7 -1.4508 -9.6697 5.1853 18 14 1.2421 -10.2700 4.9322 19 1 1.8589 -10.1526 6.2779 20 1 0.8555 -11.6826 4.6865 21 1 2.2186 -9.8374 3.9006 22 6 2.3439 -5.2726 3.4773 23 6 2.1468 -3.7727 3.2334 24 6 4.6586 -1.4200 -0.2838 25 6 5.4439 -1.3009 0.8476 26 6 6.8215 -1.2887 0.7345 27 6 7.4138 -1.3944 -0.5101 28 6 6.6284 -1.5118 -1.6416 29 6 5.2508 -1.5249 -1.5284 30 1 -1.0498 -0.0003 0.0002 31 1 3.0091 0.4125 0.9416 32 1 3.0090 0.6104 -0.8272 33 1 3.3889 -2.3312 1.7492 34 1 -0.6881 -3.9106 2.9066 35 1 -0.5478 -4.2216 1.1562 36 1 0.7853 -6.2379 1.5729 37 1 -0.7084 -6.3373 2.5363 38 1 1.5865 -7.8978 3.2088 39 1 1.8589 -7.3834 4.8910 40 1 -1.5289 -10.5908 5.4795 41 1 2.8662 -5.7137 2.6283 42 1 2.9321 -5.4198 4.3830 43 1 3.1064 -3.3101 3.0026 44 1 1.7187 -3.3102 4.1228 45 1 4.9812 -1.2186 1.8200 46 1 7.4352 -1.2012 1.6188 47 1 8.4901 -1.3845 -0.5986 48 1 7.0912 -1.5940 -2.6140 49 1 4.6371 -1.6164 -2.4123 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000868445833.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:14:22 Heat of formation + Delta-G solvation = 57.985834 kcal Electronic energy + Delta-G solvation = -29534.168907 eV Core-core repulsion = 25655.604112 eV Total energy + Delta-G solvation = -3878.564795 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.65364 -40.30037 -39.10940 -36.94912 -35.95346 -34.54154 -34.01996 -32.66950 -31.87478 -31.66516 -30.40648 -29.62926 -27.29398 -25.41554 -24.53279 -23.78780 -23.37262 -22.32773 -21.55267 -20.55097 -19.53155 -18.97707 -18.69671 -17.77130 -17.35370 -16.77325 -16.53881 -16.16767 -16.07575 -15.98554 -15.72705 -15.30827 -15.24221 -15.09700 -14.95143 -14.77447 -14.45833 -14.22676 -14.01118 -13.90099 -13.62295 -13.42910 -13.17388 -12.95033 -12.85214 -12.49715 -12.31304 -12.24209 -12.02376 -11.92559 -11.86381 -11.82932 -11.52330 -11.42393 -11.04146 -10.90038 -10.77487 -10.03949 -9.79964 -9.68511 -9.57468 -9.05009 -8.27781 -6.31447 0.37197 0.52115 1.34979 1.36898 1.46838 1.61486 2.02888 2.08175 2.25162 2.34492 2.82225 2.96490 3.04473 3.14838 3.44170 3.86745 3.93635 3.95310 4.04105 4.12517 4.14749 4.23631 4.28991 4.30763 4.33701 4.41292 4.51880 4.64008 4.64791 4.69733 4.74308 4.81704 4.84572 4.90436 4.94422 5.01200 5.06388 5.11302 5.17076 5.24971 5.41512 5.46132 5.52228 5.58435 5.66102 5.70521 5.87060 6.02388 6.11159 6.27630 6.61735 6.75153 6.92797 6.97147 7.32161 7.59285 8.88646 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.013375 B = 0.002687 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.954403 B =10419.099197 C =11958.201489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.200 4.200 3 C -0.012 4.012 4 C 0.219 3.781 5 H 0.075 0.925 6 N -0.730 5.730 7 C 0.703 3.297 8 O -0.610 6.610 9 N -0.629 5.629 10 C 0.150 3.850 11 C 0.059 3.941 12 N -0.538 5.538 13 C 0.173 3.827 14 C -0.517 4.517 15 H 0.040 0.960 16 C 0.008 3.992 17 N -0.948 5.948 18 Si 0.948 3.052 19 H -0.261 1.261 20 H -0.285 1.285 21 H -0.254 1.254 22 C 0.036 3.964 23 C 0.124 3.876 24 C -0.100 4.100 25 C -0.116 4.116 26 C -0.121 4.121 27 C -0.123 4.123 28 C -0.124 4.124 29 C -0.117 4.117 30 H 0.217 0.783 31 H 0.101 0.899 32 H 0.110 0.890 33 H 0.405 0.595 34 H 0.069 0.931 35 H 0.083 0.917 36 H 0.017 0.983 37 H 0.070 0.930 38 H -0.017 1.017 39 H 0.037 0.963 40 H 0.266 0.734 41 H 0.026 0.974 42 H 0.099 0.901 43 H 0.108 0.892 44 H 0.083 0.917 45 H 0.135 0.865 46 H 0.144 0.856 47 H 0.141 0.859 48 H 0.139 0.861 49 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.006 21.722 -10.727 32.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.200 4.200 3 C -0.049 4.049 4 C 0.113 3.887 5 H 0.093 0.907 6 N -0.389 5.389 7 C 0.405 3.595 8 O -0.489 6.489 9 N -0.367 5.367 10 C 0.026 3.974 11 C -0.070 4.070 12 N -0.263 5.263 13 C 0.046 3.954 14 C -0.555 4.555 15 H 0.058 0.942 16 C -0.190 4.190 17 N -0.588 5.588 18 Si 0.771 3.229 19 H -0.186 1.186 20 H -0.211 1.211 21 H -0.177 1.177 22 C -0.092 4.092 23 C 0.001 3.999 24 C -0.101 4.101 25 C -0.135 4.135 26 C -0.139 4.139 27 C -0.141 4.141 28 C -0.142 4.142 29 C -0.136 4.136 30 H 0.234 0.766 31 H 0.119 0.881 32 H 0.128 0.872 33 H 0.245 0.755 34 H 0.088 0.912 35 H 0.102 0.898 36 H 0.035 0.965 37 H 0.088 0.912 38 H 0.000 1.000 39 H 0.055 0.945 40 H 0.075 0.925 41 H 0.044 0.956 42 H 0.117 0.883 43 H 0.126 0.874 44 H 0.101 0.899 45 H 0.153 0.847 46 H 0.162 0.838 47 H 0.159 0.841 48 H 0.157 0.843 49 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 20.105 21.956 -10.946 31.719 hybrid contribution 0.135 -1.586 -0.129 1.597 sum 20.240 20.370 -11.074 30.777 Atomic orbital electron populations 1.25116 0.96667 0.99957 1.00986 1.23225 0.95147 1.01013 1.00613 1.19219 0.84134 0.96709 1.04857 1.19467 0.90569 0.90135 0.88497 0.90729 1.45255 1.15251 1.55643 1.22783 1.15925 0.82810 0.78798 0.81956 1.90919 1.50568 1.66815 1.40641 1.47371 1.20519 1.47998 1.20787 1.21461 0.84496 0.89400 1.02062 1.22325 0.98689 0.96030 0.89964 1.61800 1.15655 1.16932 1.31865 1.19934 0.95905 0.85075 0.94481 1.21258 0.94081 0.96509 1.43643 0.94193 1.25846 0.99164 0.99433 0.94532 1.70055 1.25752 1.16235 1.46803 0.85710 0.79708 0.77669 0.79794 1.18589 1.21066 1.17747 1.22588 0.90588 0.94770 1.01294 1.21839 0.93767 0.95273 0.88982 1.19730 0.92967 1.02607 0.94771 1.21128 0.94248 0.99899 0.98189 1.21447 0.94620 0.99164 0.98632 1.21543 1.01121 0.98815 0.92611 1.21414 0.93312 0.99532 0.99922 1.21192 0.95719 0.99742 0.96930 0.76648 0.88092 0.87208 0.75532 0.91244 0.89823 0.96468 0.91208 0.99956 0.94529 0.92462 0.95575 0.88250 0.87415 0.89924 0.84730 0.83847 0.84108 0.84272 0.85413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -5.71 17.71 74.32 1.32 -4.39 16 2 C -0.20 -5.09 11.13 31.12 0.35 -4.74 16 3 C -0.01 -0.20 5.36 28.79 0.15 -0.05 16 4 C 0.22 4.06 2.44 44.25 0.11 4.17 16 5 H 0.07 1.77 7.51 -2.39 -0.02 1.75 16 6 N -0.73 -15.00 4.90 -461.40 -2.26 -17.27 16 7 C 0.70 20.36 7.72 179.05 1.38 21.75 16 8 O -0.61 -21.75 12.32 -3.99 -0.05 -21.80 16 9 N -0.63 -18.11 3.00 -835.06 -2.51 -20.61 16 10 C 0.15 5.03 6.61 86.50 0.57 5.61 16 11 C 0.06 2.32 5.47 86.54 0.47 2.79 16 12 N -0.54 -21.31 4.62 -898.85 -4.15 -25.46 16 13 C 0.17 8.06 3.79 85.56 0.32 8.39 16 14 C -0.52 -29.45 8.96 25.60 0.23 -29.22 16 15 H 0.04 2.54 7.37 -2.91 -0.02 2.52 16 16 C 0.01 0.44 5.47 84.65 0.46 0.90 16 17 N -0.95 -59.02 13.96 21.45 0.30 -58.72 16 18 Si 0.95 43.45 27.47 68.60 1.88 45.33 16 19 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 20 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 21 H -0.25 -10.91 6.54 99.48 0.65 -10.25 16 22 C 0.04 1.06 5.62 86.38 0.49 1.54 16 23 C 0.12 2.85 6.59 86.35 0.57 3.42 16 24 C -0.10 -1.45 4.95 -19.87 -0.10 -1.54 16 25 C -0.12 -1.34 9.06 22.27 0.20 -1.14 16 26 C -0.12 -1.21 10.05 22.27 0.22 -0.99 16 27 C -0.12 -1.24 10.05 22.27 0.22 -1.02 16 28 C -0.12 -1.41 10.05 22.27 0.22 -1.18 16 29 C -0.12 -1.62 9.67 22.27 0.22 -1.40 16 30 H 0.22 5.02 7.80 -4.43 -0.03 4.98 16 31 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.40 6.18 4.37 -92.71 -0.40 5.78 16 34 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 35 H 0.08 2.91 7.09 -2.38 -0.02 2.90 16 36 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.07 3.15 6.67 -2.39 -0.02 3.14 16 38 H -0.02 -0.82 7.18 -2.39 -0.02 -0.84 16 39 H 0.04 1.63 7.40 -2.39 -0.02 1.61 16 40 H 0.27 15.48 8.31 -92.70 -0.77 14.71 16 41 H 0.03 0.78 8.14 -2.38 -0.02 0.76 16 42 H 0.10 2.53 7.99 -2.39 -0.02 2.51 16 43 H 0.11 1.61 5.63 -2.39 -0.01 1.60 16 44 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 45 H 0.13 1.09 6.92 -2.91 -0.02 1.07 16 46 H 0.14 0.83 8.06 -2.91 -0.02 0.81 16 47 H 0.14 0.83 8.06 -2.91 -0.02 0.81 16 48 H 0.14 1.06 8.06 -2.91 -0.02 1.03 16 49 H 0.13 1.59 8.04 -2.91 -0.02 1.57 16 Total: -1.00 -75.41 393.02 1.11 -74.30 By element: Atomic # 1 Polarization: 20.86 SS G_CDS: 0.48 Total: 21.35 kcal Atomic # 6 Polarization: -4.52 SS G_CDS: 7.41 Total: 2.89 kcal Atomic # 7 Polarization: -113.44 SS G_CDS: -8.62 Total: -122.07 kcal Atomic # 8 Polarization: -21.75 SS G_CDS: -0.05 Total: -21.80 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 1.88 Total: 45.33 kcal Total: -75.41 1.11 -74.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868445833.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.286 kcal (2) G-P(sol) polarization free energy of solvation -75.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds