Wall clock time and date at job start Wed Apr 1 2020 00:32:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38039 * 126.29065 * 2 1 4 4 C 1.47435 * 126.41243 * 359.96829 * 3 2 1 5 5 O 1.21598 * 120.00046 * 8.72429 * 4 3 2 6 6 N 1.34777 * 119.99820 * 188.99561 * 4 3 2 7 7 C 1.48080 * 127.85349 * 6.10829 * 6 4 3 8 8 C 1.54650 * 104.59855 * 139.98549 * 7 6 4 9 9 H 1.08996 * 113.21770 * 260.61009 * 8 7 6 10 10 C 1.56106 * 107.74714 * 134.01745 * 8 7 6 11 11 H 1.09005 * 116.23168 * 85.52368 * 10 8 7 12 12 C 1.53346 * 104.15199 * 316.23166 * 10 8 7 13 13 C 1.31791 * 108.42153 * 289.74431 * 12 10 8 14 14 C 1.54736 * 108.96936 * 0.07131 * 13 12 10 15 15 H 1.09000 * 117.39023 * 199.06846 * 14 13 12 16 16 C 1.57223 * 100.49548 * 213.17315 * 10 8 7 17 17 C 1.55783 * 104.62218 * 24.33326 * 8 7 6 18 18 C 1.52997 * 113.21303 * 236.29853 * 17 8 7 19 19 C 1.48077 * 127.85523 * 186.42089 * 6 4 3 20 20 C 1.41290 * 107.17239 * 180.22493 * 3 2 1 21 21 N 1.30449 * 108.01984 * 359.62286 * 20 3 2 22 22 N 1.34258 * 126.29353 * 180.02562 * 2 1 3 23 23 C 1.46499 * 125.75368 * 359.97426 * 22 2 1 24 24 C 1.50699 * 109.47115 * 90.00394 * 23 22 2 25 25 H 1.07997 * 119.99991 * 359.97438 * 24 23 22 26 26 C 1.37882 * 119.99946 * 180.02562 * 24 23 22 27 27 N 1.31517 * 119.99681 * 179.97438 * 26 24 23 28 28 Si 1.86797 * 120.00025 * 359.97438 * 26 24 23 29 29 H 1.48501 * 109.47005 * 90.00387 * 28 26 24 30 30 H 1.48505 * 109.46808 * 210.00044 * 28 26 24 31 31 H 1.48499 * 109.47260 * 330.00028 * 28 26 24 32 32 H 1.09000 * 109.47174 * 89.99999 * 1 2 3 33 33 H 1.09005 * 109.46836 * 209.99494 * 1 2 3 34 34 H 1.08999 * 109.47261 * 329.99771 * 1 2 3 35 35 H 1.09002 * 110.37425 * 258.86648 * 7 6 4 36 36 H 1.09000 * 110.37638 * 21.20452 * 7 6 4 37 37 H 1.08000 * 125.78762 * 109.73644 * 12 10 8 38 38 H 1.07991 * 125.78898 * 180.02562 * 13 12 10 39 39 H 1.08997 * 112.51982 * 173.22555 * 16 10 8 40 40 H 1.09000 * 112.52119 * 301.08241 * 16 10 8 41 41 H 1.09007 * 109.46741 * 179.79867 * 18 17 8 42 42 H 1.09001 * 109.47236 * 299.79080 * 18 17 8 43 43 H 1.08993 * 109.47424 * 59.79676 * 18 17 8 44 44 H 1.09007 * 110.37556 * 338.80353 * 19 6 4 45 45 H 1.09000 * 110.37607 * 101.03374 * 19 6 4 46 46 H 1.08000 * 125.98633 * 179.77197 * 20 3 2 47 47 H 1.09004 * 109.47303 * 210.00463 * 23 22 2 48 48 H 1.08998 * 109.47218 * 330.00491 * 23 22 2 49 49 H 0.96996 * 120.00066 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3241 1.1126 0.0000 4 6 1.8857 2.5203 -0.0007 5 8 0.7111 2.7914 0.1585 6 7 2.7862 3.5064 -0.1831 7 6 4.2223 3.3748 -0.5192 8 6 4.4892 4.5062 -1.5391 9 1 4.4903 4.1613 -2.5730 10 6 5.8085 5.2260 -1.1169 11 1 6.7363 4.7825 -1.4786 12 6 5.6792 5.3848 0.4028 13 6 4.7463 6.2823 0.6499 14 6 4.1741 6.7958 -0.6930 15 1 3.6387 7.7452 -0.6797 16 6 5.4893 6.6976 -1.5689 17 6 3.3866 5.5672 -1.2470 18 6 2.5341 5.9040 -2.4720 19 6 2.5658 4.9675 -0.0867 20 6 3.6590 0.6499 -0.0053 21 7 3.6341 -0.6544 -0.0001 22 7 2.3018 -1.0821 -0.0005 23 6 1.8502 -2.4758 -0.0006 24 6 1.6949 -2.9534 -1.4214 25 1 1.9106 -2.2855 -2.2422 26 6 1.2765 -4.2428 -1.6734 27 7 1.1406 -4.6595 -2.9134 28 14 0.9028 -5.3978 -0.2537 29 1 -0.5280 -5.2719 0.1233 30 1 1.1849 -6.7963 -0.6660 31 1 1.7544 -5.0435 0.9101 32 1 -0.3633 0.0000 -1.0277 33 1 -0.3633 -0.8901 0.5138 34 1 -0.3634 0.8899 0.5139 35 1 4.8348 3.5116 0.3720 36 1 4.4190 2.4020 -0.9700 37 1 6.2548 4.8514 1.1448 38 1 4.4282 6.6096 1.6286 39 1 6.2549 7.4065 -1.2538 40 1 5.2764 6.7698 -2.6355 41 1 1.7834 6.6459 -2.1993 42 1 3.1721 6.3052 -3.2595 43 1 2.0394 5.0011 -2.8298 44 1 1.5081 5.2007 -0.2100 45 1 2.9275 5.3436 0.8702 46 1 4.5448 1.2677 -0.0101 47 1 2.5850 -3.0959 0.5130 48 1 0.8917 -2.5472 0.5135 49 1 0.8466 -5.5666 -3.0908 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000887877094.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:00 Heat of formation + Delta-G solvation = 99.710772 kcal Electronic energy + Delta-G solvation = -30416.203341 eV Core-core repulsion = 26539.447875 eV Total energy + Delta-G solvation = -3876.755466 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.11183 -40.78853 -38.42470 -35.60849 -33.93041 -32.75493 -32.09983 -31.24718 -30.71881 -28.96720 -28.02422 -27.04192 -26.40122 -25.81308 -23.58756 -23.03318 -21.17290 -20.86277 -19.94689 -19.67056 -18.55448 -17.67552 -17.22338 -16.81394 -16.36576 -16.30291 -15.47633 -15.07766 -14.84380 -14.52565 -14.20957 -13.80741 -13.67749 -13.41116 -13.21882 -12.87023 -12.70415 -12.57377 -12.51105 -12.46367 -12.37710 -12.20693 -12.00468 -11.67039 -11.59196 -11.54981 -11.39330 -11.22064 -11.07270 -10.84099 -10.71067 -10.57638 -10.39286 -10.33811 -10.20167 -9.79218 -9.39345 -9.30580 -8.85150 -8.64074 -8.37853 -7.91475 -6.33237 -4.37781 1.97671 2.14452 2.74184 3.01759 3.10856 3.18075 3.19560 3.35853 3.84313 4.02168 4.15147 4.15567 4.22442 4.63873 4.69535 4.83211 4.90918 4.93183 4.96560 5.04902 5.08759 5.11526 5.17753 5.29376 5.34133 5.39705 5.51168 5.55082 5.59410 5.65390 5.67782 5.73473 5.75361 5.80659 5.84390 5.88545 5.93034 5.99377 6.04074 6.08429 6.20675 6.26403 6.39097 6.50584 6.53125 6.60969 6.69186 7.04162 7.18417 7.57586 7.81049 8.19948 8.28441 8.59735 8.69967 9.20773 10.79046 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.022392 B = 0.002655 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.119505 B =10543.402926 C =10785.602653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.167 3.833 3 C -0.324 4.324 4 C 0.624 3.376 5 O -0.556 6.556 6 N -0.621 5.621 7 C 0.090 3.910 8 C -0.096 4.096 9 H 0.096 0.904 10 C -0.071 4.071 11 H 0.104 0.896 12 C -0.165 4.165 13 C -0.165 4.165 14 C -0.067 4.067 15 H 0.105 0.895 16 C -0.117 4.117 17 C -0.073 4.073 18 C -0.128 4.128 19 C 0.114 3.886 20 C 0.049 3.951 21 N -0.293 5.293 22 N -0.313 5.313 23 C 0.225 3.775 24 C -0.545 4.545 25 H 0.081 0.919 26 C 0.081 3.919 27 N -0.883 5.883 28 Si 0.872 3.128 29 H -0.270 1.270 30 H -0.278 1.278 31 H -0.263 1.263 32 H 0.085 0.915 33 H 0.071 0.929 34 H 0.097 0.903 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.128 0.872 38 H 0.124 0.876 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.058 0.942 42 H 0.058 0.942 43 H 0.060 0.940 44 H 0.078 0.922 45 H 0.077 0.923 46 H 0.186 0.814 47 H 0.055 0.945 48 H 0.048 0.952 49 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.709 23.202 5.266 25.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.031 3.969 3 C -0.339 4.339 4 C 0.417 3.583 5 O -0.435 6.435 6 N -0.354 5.354 7 C -0.033 4.033 8 C -0.115 4.115 9 H 0.114 0.886 10 C -0.089 4.089 11 H 0.122 0.878 12 C -0.183 4.183 13 C -0.183 4.183 14 C -0.085 4.085 15 H 0.123 0.877 16 C -0.154 4.154 17 C -0.074 4.074 18 C -0.185 4.185 19 C -0.009 4.009 20 C -0.137 4.137 21 N -0.113 5.113 22 N -0.090 5.090 23 C 0.106 3.894 24 C -0.583 4.583 25 H 0.099 0.901 26 C -0.124 4.124 27 N -0.520 5.520 28 Si 0.698 3.302 29 H -0.195 1.195 30 H -0.203 1.203 31 H -0.188 1.188 32 H 0.104 0.896 33 H 0.089 0.911 34 H 0.115 0.885 35 H 0.099 0.901 36 H 0.108 0.892 37 H 0.145 0.855 38 H 0.142 0.858 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.079 0.921 44 H 0.096 0.904 45 H 0.095 0.905 46 H 0.203 0.797 47 H 0.073 0.927 48 H 0.065 0.935 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 7.603 21.782 5.264 23.664 hybrid contribution -0.520 -0.181 0.599 0.814 sum 7.083 21.601 5.863 23.476 Atomic orbital electron populations 1.20620 0.86744 1.03875 1.04162 1.21440 0.94920 0.86363 0.94196 1.19597 0.93107 0.92325 1.28880 1.16902 0.83719 0.83063 0.74594 1.90682 1.16684 1.83889 1.52292 1.48577 1.09769 1.05686 1.71398 1.23109 0.82401 0.99740 0.98016 1.23444 0.93906 0.94545 0.99586 0.88555 1.22936 0.97264 0.95756 0.92952 0.87814 1.23899 0.99193 0.98531 0.96640 1.24163 0.97264 0.99008 0.97868 1.23435 0.95448 0.96995 0.92634 0.87738 1.24202 0.96162 0.95536 0.99526 1.22630 0.94866 0.94429 0.95428 1.21609 0.99033 1.01808 0.96094 1.22528 1.00748 0.80175 0.97404 1.24261 0.96894 0.92447 1.00108 1.77153 0.98073 1.12444 1.23624 1.48899 1.02809 1.07487 1.49802 1.20148 0.95711 0.73360 1.00201 1.21088 1.47995 0.99189 0.90000 0.90053 1.24791 0.94285 0.97405 0.95871 1.69863 1.45189 1.18253 1.18665 0.86906 0.79537 0.81032 0.82719 1.19495 1.20349 1.18772 0.89601 0.91052 0.88465 0.90080 0.89153 0.85461 0.85814 0.90834 0.90743 0.92303 0.92274 0.92071 0.90388 0.90494 0.79739 0.92728 0.93453 0.91972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.75 9.66 36.01 0.35 -1.40 16 2 C 0.17 3.45 7.00 -81.60 -0.57 2.88 16 3 C -0.32 -6.15 6.05 -105.07 -0.64 -6.78 16 4 C 0.62 11.08 7.89 -12.51 -0.10 10.98 16 5 O -0.56 -11.13 15.07 5.28 0.08 -11.05 16 6 N -0.62 -8.56 3.31 -170.59 -0.56 -9.13 16 7 C 0.09 0.98 4.86 -2.31 -0.01 0.97 16 8 C -0.10 -0.86 3.66 -86.60 -0.32 -1.18 16 9 H 0.10 0.89 8.00 -51.93 -0.42 0.48 16 10 C -0.07 -0.50 4.98 -86.48 -0.43 -0.93 16 11 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 12 C -0.16 -1.21 7.52 -34.87 -0.26 -1.47 16 13 C -0.17 -1.22 7.53 -34.13 -0.26 -1.48 16 14 C -0.07 -0.47 4.71 -85.12 -0.40 -0.87 16 15 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 16 C -0.12 -0.76 6.62 -21.50 -0.14 -0.90 16 17 C -0.07 -0.64 0.80 -150.71 -0.12 -0.77 16 18 C -0.13 -1.12 8.91 37.16 0.33 -0.79 16 19 C 0.11 1.30 5.89 -2.52 -0.01 1.28 16 20 C 0.05 0.88 10.33 -16.98 -0.18 0.71 16 21 N -0.29 -6.31 12.50 30.86 0.39 -5.93 16 22 N -0.31 -7.05 3.56 -57.77 -0.21 -7.26 16 23 C 0.22 5.29 5.03 -5.19 -0.03 5.27 16 24 C -0.54 -15.02 9.94 -34.44 -0.34 -15.36 16 25 H 0.08 2.53 8.06 -52.49 -0.42 2.11 16 26 C 0.08 2.24 5.47 -17.82 -0.10 2.14 16 27 N -0.88 -25.94 13.96 55.43 0.77 -25.17 16 28 Si 0.87 19.87 27.47 -169.99 -4.67 15.20 16 29 H -0.27 -5.95 7.11 56.52 0.40 -5.54 16 30 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 31 H -0.26 -5.72 6.54 56.52 0.37 -5.35 16 32 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 33 H 0.07 1.21 7.05 -51.93 -0.37 0.84 16 34 H 0.10 1.71 6.37 -51.93 -0.33 1.38 16 35 H 0.08 0.78 5.54 -51.93 -0.29 0.50 16 36 H 0.09 1.06 4.89 -51.93 -0.25 0.80 16 37 H 0.13 0.84 8.00 -52.49 -0.42 0.42 16 38 H 0.12 0.83 8.01 -52.49 -0.42 0.41 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.07 0.47 7.55 -51.93 -0.39 0.07 16 41 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.06 0.44 7.56 -51.93 -0.39 0.05 16 43 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 44 H 0.08 1.00 7.61 -51.93 -0.40 0.60 16 45 H 0.08 0.81 5.55 -51.93 -0.29 0.52 16 46 H 0.19 2.53 5.12 -52.49 -0.27 2.27 16 47 H 0.05 1.29 7.20 -51.93 -0.37 0.91 16 48 H 0.05 1.03 6.44 -51.93 -0.33 0.70 16 49 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 373.61 15.07 5.63 5.63 Total: -1.00 -32.38 373.61 -8.86 -41.24 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -7.07 Total: 4.16 kcal Atomic # 6 Polarization: -4.48 SS G_CDS: -3.23 Total: -7.71 kcal Atomic # 7 Polarization: -47.87 SS G_CDS: 0.39 Total: -47.48 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: 0.08 Total: -11.05 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -4.67 Total: 15.20 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.38 -8.86 -41.24 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887877094.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.955 kcal (2) G-P(sol) polarization free energy of solvation -32.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds