Wall clock time and date at job start Wed Apr 1 2020 00:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38039 * 126.29065 * 2 1 4 4 C 1.47435 * 126.41243 * 359.96829 * 3 2 1 5 5 O 1.21598 * 120.00046 * 8.72429 * 4 3 2 6 6 N 1.34777 * 119.99820 * 188.99561 * 4 3 2 7 7 C 1.48080 * 127.85349 * 6.10829 * 6 4 3 8 8 C 1.54650 * 104.59855 * 139.98549 * 7 6 4 9 9 H 1.08996 * 113.21770 * 260.61009 * 8 7 6 10 10 C 1.56106 * 107.74714 * 134.01745 * 8 7 6 11 11 H 1.09005 * 116.23168 * 85.52368 * 10 8 7 12 12 C 1.53346 * 104.15199 * 316.23166 * 10 8 7 13 13 C 1.31791 * 108.42153 * 289.74431 * 12 10 8 14 14 C 1.54736 * 108.96936 * 0.07131 * 13 12 10 15 15 H 1.09000 * 117.39023 * 199.06846 * 14 13 12 16 16 C 1.57223 * 100.49548 * 213.17315 * 10 8 7 17 17 C 1.55783 * 104.62218 * 24.33326 * 8 7 6 18 18 C 1.52997 * 113.21303 * 236.29853 * 17 8 7 19 19 C 1.48077 * 127.85523 * 186.42089 * 6 4 3 20 20 C 1.41290 * 107.17239 * 180.22493 * 3 2 1 21 21 N 1.30449 * 108.01984 * 359.62286 * 20 3 2 22 22 N 1.34258 * 126.29353 * 180.02562 * 2 1 3 23 23 C 1.46499 * 125.75368 * 359.97426 * 22 2 1 24 24 C 1.50699 * 109.47115 * 90.00394 * 23 22 2 25 25 H 1.07997 * 119.99991 * 359.97438 * 24 23 22 26 26 C 1.37882 * 119.99946 * 180.02562 * 24 23 22 27 27 N 1.31517 * 119.99681 * 179.97438 * 26 24 23 28 28 Si 1.86797 * 120.00025 * 359.97438 * 26 24 23 29 29 H 1.48501 * 109.47005 * 90.00387 * 28 26 24 30 30 H 1.48505 * 109.46808 * 210.00044 * 28 26 24 31 31 H 1.48499 * 109.47260 * 330.00028 * 28 26 24 32 32 H 1.09000 * 109.47174 * 89.99999 * 1 2 3 33 33 H 1.09005 * 109.46836 * 209.99494 * 1 2 3 34 34 H 1.08999 * 109.47261 * 329.99771 * 1 2 3 35 35 H 1.09002 * 110.37425 * 258.86648 * 7 6 4 36 36 H 1.09000 * 110.37638 * 21.20452 * 7 6 4 37 37 H 1.08000 * 125.78762 * 109.73644 * 12 10 8 38 38 H 1.07991 * 125.78898 * 180.02562 * 13 12 10 39 39 H 1.08997 * 112.51982 * 173.22555 * 16 10 8 40 40 H 1.09000 * 112.52119 * 301.08241 * 16 10 8 41 41 H 1.09007 * 109.46741 * 179.79867 * 18 17 8 42 42 H 1.09001 * 109.47236 * 299.79080 * 18 17 8 43 43 H 1.08993 * 109.47424 * 59.79676 * 18 17 8 44 44 H 1.09007 * 110.37556 * 338.80353 * 19 6 4 45 45 H 1.09000 * 110.37607 * 101.03374 * 19 6 4 46 46 H 1.08000 * 125.98633 * 179.77197 * 20 3 2 47 47 H 1.09004 * 109.47303 * 210.00463 * 23 22 2 48 48 H 1.08998 * 109.47218 * 330.00491 * 23 22 2 49 49 H 0.96996 * 120.00066 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3241 1.1126 0.0000 4 6 1.8857 2.5203 -0.0007 5 8 0.7111 2.7914 0.1585 6 7 2.7862 3.5064 -0.1831 7 6 4.2223 3.3748 -0.5192 8 6 4.4892 4.5062 -1.5391 9 1 4.4903 4.1613 -2.5730 10 6 5.8085 5.2260 -1.1169 11 1 6.7363 4.7825 -1.4786 12 6 5.6792 5.3848 0.4028 13 6 4.7463 6.2823 0.6499 14 6 4.1741 6.7958 -0.6930 15 1 3.6387 7.7452 -0.6797 16 6 5.4893 6.6976 -1.5689 17 6 3.3866 5.5672 -1.2470 18 6 2.5341 5.9040 -2.4720 19 6 2.5658 4.9675 -0.0867 20 6 3.6590 0.6499 -0.0053 21 7 3.6341 -0.6544 -0.0001 22 7 2.3018 -1.0821 -0.0005 23 6 1.8502 -2.4758 -0.0006 24 6 1.6949 -2.9534 -1.4214 25 1 1.9106 -2.2855 -2.2422 26 6 1.2765 -4.2428 -1.6734 27 7 1.1406 -4.6595 -2.9134 28 14 0.9028 -5.3978 -0.2537 29 1 -0.5280 -5.2719 0.1233 30 1 1.1849 -6.7963 -0.6660 31 1 1.7544 -5.0435 0.9101 32 1 -0.3633 0.0000 -1.0277 33 1 -0.3633 -0.8901 0.5138 34 1 -0.3634 0.8899 0.5139 35 1 4.8348 3.5116 0.3720 36 1 4.4190 2.4020 -0.9700 37 1 6.2548 4.8514 1.1448 38 1 4.4282 6.6096 1.6286 39 1 6.2549 7.4065 -1.2538 40 1 5.2764 6.7698 -2.6355 41 1 1.7834 6.6459 -2.1993 42 1 3.1721 6.3052 -3.2595 43 1 2.0394 5.0011 -2.8298 44 1 1.5081 5.2007 -0.2100 45 1 2.9275 5.3436 0.8702 46 1 4.5448 1.2677 -0.0101 47 1 2.5850 -3.0959 0.5130 48 1 0.8917 -2.5472 0.5135 49 1 0.8466 -5.5666 -3.0908 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000887877094.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:31:59 Heat of formation + Delta-G solvation = 80.497408 kcal Electronic energy + Delta-G solvation = -30417.036495 eV Core-core repulsion = 26539.447875 eV Total energy + Delta-G solvation = -3877.588620 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.90378 -42.26944 -39.73833 -36.66158 -35.78288 -34.13400 -33.40115 -32.83464 -31.48130 -30.15000 -29.30617 -28.36061 -27.36822 -26.75557 -24.93689 -24.54168 -22.51479 -21.65672 -21.02194 -20.58304 -19.90364 -19.30751 -18.55155 -17.96583 -17.26472 -17.13797 -16.80349 -16.52904 -16.37536 -16.03091 -15.45179 -15.07195 -14.81445 -14.61656 -14.40857 -14.21542 -14.16604 -13.87576 -13.75565 -13.63309 -13.31904 -13.17647 -13.14649 -13.07515 -12.91513 -12.57818 -12.44399 -12.22231 -12.14995 -11.98962 -11.86948 -11.86600 -11.66480 -11.44848 -11.32605 -10.99985 -10.93402 -10.79368 -10.30560 -10.10368 -9.60422 -9.20362 -8.44888 -6.57138 0.59317 1.23969 1.32612 1.33689 1.41112 1.43923 1.57359 2.05853 2.23188 2.44115 2.87334 3.28594 3.42731 3.58446 3.65421 3.66492 3.97726 4.07522 4.08542 4.12618 4.16044 4.19911 4.27846 4.32847 4.33352 4.41456 4.49017 4.60167 4.64233 4.65460 4.67487 4.75642 4.83267 4.86723 4.95365 5.00554 5.02823 5.06154 5.10211 5.12208 5.15199 5.22931 5.28112 5.37184 5.39161 5.42223 5.57397 5.66536 5.79711 6.14219 6.17729 6.45453 6.57386 6.71597 7.06695 7.23921 8.71662 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.022392 B = 0.002655 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.119505 B =10543.402926 C =10785.602653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.148 3.852 3 C -0.327 4.327 4 C 0.619 3.381 5 O -0.587 6.587 6 N -0.617 5.617 7 C 0.085 3.915 8 C -0.095 4.095 9 H 0.092 0.908 10 C -0.065 4.065 11 H 0.117 0.883 12 C -0.170 4.170 13 C -0.172 4.172 14 C -0.061 4.061 15 H 0.117 0.883 16 C -0.111 4.111 17 C -0.069 4.069 18 C -0.127 4.127 19 C 0.110 3.890 20 C 0.069 3.931 21 N -0.329 5.329 22 N -0.336 5.336 23 C 0.233 3.767 24 C -0.554 4.554 25 H 0.026 0.974 26 C 0.024 3.976 27 N -0.935 5.935 28 Si 0.949 3.051 29 H -0.252 1.252 30 H -0.276 1.276 31 H -0.242 1.242 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.103 0.897 35 H 0.101 0.899 36 H 0.081 0.919 37 H 0.137 0.863 38 H 0.131 0.869 39 H 0.083 0.917 40 H 0.078 0.922 41 H 0.065 0.935 42 H 0.075 0.925 43 H 0.034 0.966 44 H 0.059 0.941 45 H 0.092 0.908 46 H 0.226 0.774 47 H 0.058 0.942 48 H 0.071 0.929 49 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.028 24.733 7.100 27.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.013 3.987 3 C -0.342 4.342 4 C 0.411 3.589 5 O -0.469 6.469 6 N -0.349 5.349 7 C -0.036 4.036 8 C -0.115 4.115 9 H 0.111 0.889 10 C -0.084 4.084 11 H 0.135 0.865 12 C -0.188 4.188 13 C -0.190 4.190 14 C -0.080 4.080 15 H 0.135 0.865 16 C -0.149 4.149 17 C -0.070 4.070 18 C -0.184 4.184 19 C -0.011 4.011 20 C -0.117 4.117 21 N -0.148 5.148 22 N -0.113 5.113 23 C 0.114 3.886 24 C -0.592 4.592 25 H 0.044 0.956 26 C -0.176 4.176 27 N -0.572 5.572 28 Si 0.770 3.230 29 H -0.176 1.176 30 H -0.201 1.201 31 H -0.166 1.166 32 H 0.096 0.904 33 H 0.102 0.898 34 H 0.121 0.879 35 H 0.119 0.881 36 H 0.099 0.901 37 H 0.154 0.846 38 H 0.148 0.852 39 H 0.102 0.898 40 H 0.097 0.903 41 H 0.084 0.916 42 H 0.094 0.906 43 H 0.053 0.947 44 H 0.078 0.922 45 H 0.109 0.891 46 H 0.241 0.759 47 H 0.076 0.924 48 H 0.089 0.911 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 8.961 23.370 7.095 26.015 hybrid contribution -0.862 -0.471 -0.078 0.986 sum 8.099 22.899 7.017 25.282 Atomic orbital electron populations 1.20617 0.85620 1.04740 1.03844 1.21940 0.95993 0.86563 0.94247 1.19901 0.93436 0.92907 1.27982 1.16790 0.83883 0.83259 0.75014 1.90654 1.17976 1.84273 1.53998 1.48612 1.10563 1.06181 1.69534 1.23345 0.80719 1.00156 0.99422 1.23444 0.95302 0.93905 0.98816 0.88929 1.22973 0.96534 0.95903 0.92970 0.86533 1.24076 0.99241 0.98574 0.96868 1.24329 0.97320 0.99099 0.98263 1.23469 0.95405 0.96451 0.92638 0.86486 1.24188 0.95870 0.95149 0.99661 1.22615 0.94527 0.95353 0.94467 1.21597 0.99401 1.00807 0.96587 1.22769 1.00350 0.78652 0.99344 1.24902 0.97862 0.91580 0.97393 1.77096 0.98044 1.14196 1.25510 1.48789 1.03462 1.07317 1.51701 1.19920 0.96839 0.74375 0.97507 1.21168 1.48275 0.98896 0.90848 0.95604 1.25813 0.93560 0.99180 0.99066 1.70021 1.46537 1.19124 1.21569 0.85704 0.80461 0.77844 0.79024 1.17638 1.20135 1.16577 0.90424 0.89815 0.87870 0.88112 0.90112 0.84561 0.85151 0.89822 0.90319 0.91631 0.90595 0.94725 0.92218 0.89055 0.75854 0.92425 0.91145 0.91593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.35 9.66 71.24 0.69 -2.66 16 2 C 0.15 6.21 7.00 42.14 0.30 6.50 16 3 C -0.33 -12.46 6.05 -20.15 -0.12 -12.59 16 4 C 0.62 22.02 7.89 86.67 0.68 22.71 16 5 O -0.59 -23.87 15.07 -4.02 -0.06 -23.94 16 6 N -0.62 -16.54 3.31 -811.90 -2.69 -19.23 16 7 C 0.09 1.70 4.86 86.64 0.42 2.12 16 8 C -0.10 -1.53 3.66 -8.19 -0.03 -1.56 16 9 H 0.09 1.58 8.00 -2.39 -0.02 1.56 16 10 C -0.07 -0.73 4.98 -8.11 -0.04 -0.77 16 11 H 0.12 1.05 8.14 -2.38 -0.02 1.03 16 12 C -0.17 -1.94 7.52 25.79 0.19 -1.75 16 13 C -0.17 -2.02 7.53 26.26 0.20 -1.83 16 14 C -0.06 -0.69 4.71 -7.23 -0.03 -0.73 16 15 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 16 C -0.11 -1.08 6.62 33.98 0.23 -0.86 16 17 C -0.07 -1.10 0.80 -49.72 -0.04 -1.14 16 18 C -0.13 -2.09 8.91 71.98 0.64 -1.45 16 19 C 0.11 2.39 5.89 86.50 0.51 2.90 16 20 C 0.07 2.43 10.33 85.65 0.88 3.31 16 21 N -0.33 -14.23 12.50 -56.27 -0.70 -14.93 16 22 N -0.34 -15.32 3.56 -336.70 -1.20 -16.52 16 23 C 0.23 11.01 5.03 85.63 0.43 11.44 16 24 C -0.55 -31.59 9.94 25.60 0.25 -31.33 16 25 H 0.03 1.71 8.06 -2.91 -0.02 1.68 16 26 C 0.02 1.35 5.47 84.66 0.46 1.81 16 27 N -0.93 -56.62 13.96 21.45 0.30 -56.32 16 28 Si 0.95 40.54 27.47 68.60 1.88 42.43 16 29 H -0.25 -10.06 7.11 99.48 0.71 -9.35 16 30 H -0.28 -11.65 7.11 99.48 0.71 -10.95 16 31 H -0.24 -9.50 6.54 99.48 0.65 -8.85 16 32 H 0.08 2.97 8.14 -2.39 -0.02 2.95 16 33 H 0.08 2.83 7.05 -2.38 -0.02 2.81 16 34 H 0.10 3.68 6.37 -2.39 -0.02 3.66 16 35 H 0.10 1.66 5.54 -2.39 -0.01 1.64 16 36 H 0.08 1.76 4.89 -2.39 -0.01 1.75 16 37 H 0.14 1.33 8.00 -2.91 -0.02 1.30 16 38 H 0.13 1.37 8.01 -2.92 -0.02 1.34 16 39 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.08 0.73 7.55 -2.39 -0.02 0.71 16 41 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 42 H 0.08 0.99 7.56 -2.39 -0.02 0.97 16 43 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 44 H 0.06 1.52 7.61 -2.38 -0.02 1.50 16 45 H 0.09 1.74 5.55 -2.39 -0.01 1.72 16 46 H 0.23 5.72 5.12 -2.91 -0.01 5.71 16 47 H 0.06 2.67 7.20 -2.38 -0.02 2.65 16 48 H 0.07 2.98 6.44 -2.39 -0.02 2.96 16 49 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -73.65 373.61 4.07 -69.57 By element: Atomic # 1 Polarization: 23.88 SS G_CDS: 0.92 Total: 24.79 kcal Atomic # 6 Polarization: -11.48 SS G_CDS: 5.62 Total: -5.86 kcal Atomic # 7 Polarization: -102.71 SS G_CDS: -4.29 Total: -107.00 kcal Atomic # 8 Polarization: -23.87 SS G_CDS: -0.06 Total: -23.94 kcal Atomic # 14 Polarization: 40.54 SS G_CDS: 1.88 Total: 42.43 kcal Total: -73.65 4.07 -69.57 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887877094.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.071 kcal (2) G-P(sol) polarization free energy of solvation -73.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.574 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds