Wall clock time and date at job start Wed Apr 1 2020 00:22:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.67985 * 2 1 4 4 C 1.53096 * 109.57622 * 239.67473 * 2 1 3 5 5 C 1.52578 * 109.96012 * 303.21918 * 4 2 1 6 6 H 1.09004 * 109.18683 * 49.62266 * 5 4 2 7 7 N 1.46495 * 109.22669 * 169.00167 * 5 4 2 8 8 C 1.34780 * 120.00103 * 206.23820 * 7 5 4 9 9 O 1.21587 * 119.99718 * 359.97438 * 8 7 5 10 10 N 1.34779 * 120.00165 * 180.02562 * 8 7 5 11 11 C 1.46497 * 119.99872 * 180.02562 * 10 8 7 12 12 C 1.53051 * 109.45788 * 275.02478 * 11 10 8 13 13 C 1.53194 * 109.31161 * 178.60385 * 12 11 10 14 14 N 1.46923 * 108.76589 * 54.65426 * 13 12 11 15 15 C 1.36937 * 120.63331 * 126.40462 * 14 13 12 16 16 H 1.08005 * 119.99599 * 331.81152 * 15 14 13 17 17 C 1.38810 * 120.00406 * 151.80607 * 15 14 13 18 18 N 1.31619 * 119.99986 * 343.08656 * 17 15 14 19 19 Si 1.86802 * 120.00064 * 163.07983 * 17 15 14 20 20 H 1.48498 * 109.46828 * 90.00576 * 19 17 15 21 21 H 1.48503 * 109.47136 * 210.00327 * 19 17 15 22 22 H 1.48500 * 109.47191 * 330.00849 * 19 17 15 23 23 C 1.46929 * 118.73977 * 306.38611 * 14 13 12 24 24 C 1.53045 * 109.45996 * 154.97442 * 11 10 8 25 25 C 1.52579 * 110.72672 * 289.32342 * 5 4 2 26 26 C 1.53102 * 109.95436 * 70.67687 * 25 5 4 27 27 S 1.81742 * 109.57482 * 120.32144 * 2 1 3 28 28 H 1.08997 * 109.47058 * 299.67572 * 1 2 3 29 29 H 1.08997 * 109.46711 * 59.68024 * 1 2 3 30 30 H 1.09004 * 109.47123 * 179.67708 * 1 2 3 31 31 H 1.08997 * 109.46823 * 180.31948 * 3 2 1 32 32 H 1.08999 * 109.47198 * 300.32243 * 3 2 1 33 33 H 1.09003 * 109.47153 * 60.32135 * 3 2 1 34 34 H 1.09000 * 109.39188 * 183.06439 * 4 2 1 35 35 H 1.09004 * 109.38555 * 63.36952 * 4 2 1 36 36 H 0.97000 * 120.00127 * 25.96110 * 7 5 4 37 37 H 0.97003 * 119.99955 * 0.02562 * 10 8 7 38 38 H 1.08997 * 109.46487 * 34.99727 * 11 10 8 39 39 H 1.09002 * 109.49210 * 298.56592 * 12 11 10 40 40 H 1.08994 * 109.49598 * 58.66398 * 12 11 10 41 41 H 1.08995 * 109.59482 * 294.86786 * 13 12 11 42 42 H 1.09001 * 109.70298 * 174.50344 * 13 12 11 43 43 H 0.97004 * 119.99619 * 179.97438 * 18 17 15 44 44 H 1.09006 * 109.58214 * 293.81770 * 23 14 13 45 45 H 1.09006 * 109.58829 * 173.39754 * 23 14 13 46 46 H 1.09000 * 109.49341 * 301.33435 * 24 11 10 47 47 H 1.08993 * 109.49875 * 61.39608 * 24 11 10 48 48 H 1.08996 * 109.38957 * 190.81793 * 25 5 4 49 49 H 1.08996 * 109.39323 * 310.52687 * 25 5 4 50 50 H 1.08994 * 109.58011 * 56.77893 * 26 25 5 51 51 H 1.09000 * 109.57385 * 177.04162 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0453 1.4406 0.0000 4 6 2.0430 -0.7283 -1.2451 5 6 1.4773 -2.1446 -1.2902 6 1 0.3987 -2.1046 -1.1375 7 7 1.7573 -2.7344 -2.6016 8 6 0.9575 -3.7035 -3.0893 9 8 0.0039 -4.0885 -2.4406 10 7 1.2154 -4.2466 -4.2956 11 6 0.3458 -5.2995 -4.8259 12 6 0.7976 -6.6565 -4.2809 13 6 -0.1351 -7.7507 -4.8096 14 7 -0.1725 -7.6719 -6.2762 15 6 0.0988 -8.7746 -7.0415 16 1 0.7552 -9.5451 -6.6646 17 6 -0.4698 -8.9022 -8.3013 18 7 -1.5070 -8.1630 -8.6332 19 14 0.2373 -10.1229 -9.5258 20 1 -0.4369 -11.4358 -9.3614 21 1 0.0170 -9.6228 -10.9067 22 1 1.6938 -10.2805 -9.2828 23 6 -0.5071 -6.3874 -6.9064 24 6 0.4295 -5.3084 -6.3540 25 6 2.1066 -3.0123 -0.2043 26 6 1.6016 -2.5738 1.1729 27 16 2.1389 -0.8645 1.4781 28 1 -0.3633 0.5088 0.8929 29 1 -0.3633 0.5188 -0.8871 30 1 -0.3633 -1.0277 -0.0058 31 1 3.1352 1.4366 -0.0057 32 1 1.6791 1.9575 -0.8871 33 1 1.6885 1.9541 0.8929 34 1 3.1316 -0.7742 -1.2147 35 1 1.7300 -0.1850 -2.1367 36 1 2.5159 -2.4248 -3.1207 37 1 1.9768 -3.9402 -4.8126 38 1 -0.6829 -5.1095 -4.5196 39 1 1.8177 -6.8583 -4.6078 40 1 0.7602 -6.6418 -3.1917 41 1 -1.1379 -7.6008 -4.4099 42 1 0.2370 -8.7291 -4.5057 43 1 -1.9040 -8.2520 -9.5138 44 1 -1.5405 -6.1264 -6.6776 45 1 -0.3782 -6.4654 -7.9860 46 1 0.1301 -4.3341 -6.7403 47 1 1.4531 -5.5226 -6.6610 48 1 1.8376 -4.0550 -0.3731 49 1 3.1910 -2.9091 -0.2418 50 1 0.5130 -2.6239 1.1958 51 1 2.0137 -3.2305 1.9391 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892879282.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:22:21 Heat of formation + Delta-G solvation = -24.504138 kcal Electronic energy + Delta-G solvation = -28394.721025 eV Core-core repulsion = 24648.023147 eV Total energy + Delta-G solvation = -3746.697878 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.188 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.29324 -38.49680 -37.24373 -34.91229 -34.32344 -32.97587 -31.88048 -30.12788 -29.47236 -28.48229 -27.84237 -25.26441 -24.58033 -22.49366 -22.15335 -21.52633 -20.66165 -20.46226 -19.44105 -18.23170 -17.01218 -16.66218 -16.51184 -15.33794 -15.21549 -15.15402 -14.72477 -14.59272 -14.23653 -14.11416 -14.00020 -13.72188 -13.55489 -13.49705 -13.05979 -12.87940 -12.65449 -12.57601 -12.36890 -12.28540 -12.12422 -11.85725 -11.54587 -11.45513 -11.17282 -11.11759 -10.84885 -10.71217 -10.68857 -10.49897 -10.28232 -10.11587 -10.03876 -9.91107 -9.75206 -9.54051 -9.23151 -8.62096 -8.44458 -8.00428 -6.68449 -5.80164 -3.22143 1.38543 2.17006 2.69322 3.32724 3.36588 3.43615 3.45842 4.11623 4.14238 4.34349 4.47904 4.49013 4.58751 4.66761 4.76926 4.95748 5.03305 5.17742 5.26075 5.31529 5.33545 5.35784 5.40447 5.43180 5.49219 5.51049 5.54931 5.61190 5.66971 5.70863 5.78657 5.89596 5.95980 6.08401 6.28868 6.35614 6.39694 6.49649 6.57426 6.60801 6.80368 6.89135 6.98760 7.09949 7.31667 7.61193 7.78772 8.12318 8.44233 8.72933 9.20320 9.83629 10.40816 11.28827 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.033251 B = 0.001997 C = 0.001955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.870848 B =14018.295539 C =14319.302283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.018 4.018 3 C -0.128 4.128 4 C -0.121 4.121 5 C 0.155 3.845 6 H 0.094 0.906 7 N -0.747 5.747 8 C 0.702 3.298 9 O -0.590 6.590 10 N -0.739 5.739 11 C 0.169 3.831 12 C -0.138 4.138 13 C 0.147 3.853 14 N -0.593 5.593 15 C -0.251 4.251 16 H 0.065 0.935 17 C 0.001 3.999 18 N -0.903 5.903 19 Si 0.902 3.098 20 H -0.287 1.287 21 H -0.290 1.290 22 H -0.280 1.280 23 C 0.175 3.825 24 C -0.146 4.146 25 C -0.132 4.132 26 C -0.077 4.077 27 S -0.263 6.263 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.394 0.606 37 H 0.391 0.609 38 H 0.081 0.919 39 H 0.056 0.944 40 H 0.054 0.946 41 H 0.020 0.980 42 H 0.055 0.945 43 H 0.254 0.746 44 H 0.021 0.979 45 H 0.091 0.909 46 H 0.053 0.947 47 H 0.059 0.941 48 H 0.083 0.917 49 H 0.075 0.925 50 H 0.087 0.913 51 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.178 19.410 16.093 26.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.129 4.129 3 C -0.186 4.186 4 C -0.160 4.160 5 C 0.049 3.951 6 H 0.112 0.888 7 N -0.403 5.403 8 C 0.402 3.598 9 O -0.468 6.468 10 N -0.392 5.392 11 C 0.065 3.935 12 C -0.179 4.179 13 C 0.020 3.980 14 N -0.316 5.316 15 C -0.381 4.381 16 H 0.083 0.917 17 C -0.197 4.197 18 N -0.548 5.548 19 Si 0.732 3.268 20 H -0.214 1.214 21 H -0.216 1.216 22 H -0.205 1.205 23 C 0.048 3.952 24 C -0.186 4.186 25 C -0.172 4.172 26 C -0.226 4.226 27 S -0.035 6.035 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.085 0.915 34 H 0.099 0.901 35 H 0.100 0.900 36 H 0.227 0.773 37 H 0.224 0.776 38 H 0.099 0.901 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.038 0.962 42 H 0.074 0.926 43 H 0.064 0.936 44 H 0.039 0.961 45 H 0.110 0.890 46 H 0.072 0.928 47 H 0.078 0.922 48 H 0.101 0.899 49 H 0.093 0.907 50 H 0.105 0.895 51 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 8.736 19.416 17.413 27.505 hybrid contribution 0.436 -0.871 -2.130 2.342 sum 9.172 18.545 15.283 25.722 Atomic orbital electron populations 1.22219 0.92401 1.03093 1.03008 1.22636 0.98500 0.97973 0.93777 1.21663 1.01783 0.92285 1.02871 1.22092 1.01792 0.94637 0.97519 1.20774 1.01527 0.90840 0.81923 0.88804 1.45176 1.32723 1.41724 1.20638 1.16026 0.82527 0.79434 0.81806 1.90917 1.30973 1.65095 1.59796 1.45562 1.33140 1.41862 1.18619 1.20912 0.93637 0.85165 0.93766 1.22384 1.00609 0.95687 0.99212 1.20877 0.95661 0.95736 0.85690 1.44097 1.81426 1.06719 0.99324 1.19175 1.21662 0.99475 0.97782 0.91694 1.25057 0.95930 0.98866 0.99877 1.70028 1.21166 1.42876 1.20713 0.86306 0.78881 0.80845 0.80791 1.21384 1.21573 1.20524 1.20744 0.93196 0.82218 0.99039 1.22542 1.02441 1.00606 0.93008 1.22145 1.01242 1.01336 0.92522 1.23417 1.04205 0.94434 1.00525 1.86865 1.77353 1.07622 1.31688 0.91238 0.91494 0.91693 0.91552 0.91028 0.91527 0.90119 0.90038 0.77313 0.77646 0.90111 0.92497 0.92774 0.96192 0.92614 0.93611 0.96092 0.89040 0.92815 0.92250 0.89876 0.90673 0.89469 0.87547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 8.03 37.16 0.30 -0.79 16 2 C -0.02 -0.13 0.87 -90.57 -0.08 -0.21 16 3 C -0.13 -0.74 8.51 37.16 0.32 -0.42 16 4 C -0.12 -0.84 4.06 -26.90 -0.11 -0.95 16 5 C 0.16 1.44 2.05 -68.36 -0.14 1.30 16 6 H 0.09 1.08 5.22 -51.93 -0.27 0.81 16 7 N -0.75 -7.47 5.05 -59.10 -0.30 -7.77 16 8 C 0.70 10.06 8.44 -86.91 -0.73 9.32 16 9 O -0.59 -10.93 15.65 5.29 0.08 -10.85 16 10 N -0.74 -10.16 5.08 -58.63 -0.30 -10.46 16 11 C 0.17 2.93 2.42 -67.88 -0.16 2.77 16 12 C -0.14 -2.55 5.65 -26.60 -0.15 -2.70 16 13 C 0.15 3.19 6.52 -3.71 -0.02 3.17 16 14 N -0.59 -14.81 2.99 -172.32 -0.52 -15.32 16 15 C -0.25 -6.86 9.58 -15.06 -0.14 -7.00 16 16 H 0.07 1.74 7.89 -52.48 -0.41 1.33 16 17 C 0.00 0.03 4.92 -17.43 -0.09 -0.06 16 18 N -0.90 -26.01 11.20 55.49 0.62 -25.39 16 19 Si 0.90 21.48 29.59 -169.99 -5.03 16.45 16 20 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 C 0.17 4.08 5.30 -3.71 -0.02 4.06 16 24 C -0.15 -2.64 5.55 -26.61 -0.15 -2.79 16 25 C -0.13 -1.22 5.31 -26.89 -0.14 -1.37 16 26 C -0.08 -0.66 6.08 37.21 0.23 -0.43 16 27 S -0.26 -2.27 21.12 -107.50 -2.27 -4.54 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.56 5.15 -51.93 -0.27 0.29 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.08 0.52 8.06 -51.93 -0.42 0.11 16 35 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.39 2.85 8.61 -40.82 -0.35 2.50 16 37 H 0.39 4.25 8.62 -40.82 -0.35 3.90 16 38 H 0.08 1.60 7.58 -51.93 -0.39 1.21 16 39 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 43 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 44 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.09 2.37 6.06 -51.93 -0.31 2.06 16 46 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 47 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 48 H 0.08 0.95 8.09 -51.93 -0.42 0.53 16 49 H 0.07 0.65 8.06 -51.93 -0.42 0.23 16 50 H 0.09 0.77 7.43 -51.93 -0.39 0.39 16 51 H 0.11 0.82 8.14 -51.93 -0.42 0.39 16 LS Contribution 398.13 15.07 6.00 6.00 Total: -1.00 -31.57 398.13 -11.86 -43.43 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: -9.05 Total: 4.53 kcal Atomic # 6 Polarization: 5.02 SS G_CDS: -1.10 Total: 3.92 kcal Atomic # 7 Polarization: -58.45 SS G_CDS: -0.49 Total: -58.94 kcal Atomic # 8 Polarization: -10.93 SS G_CDS: 0.08 Total: -10.85 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.03 Total: 16.45 kcal Atomic # 16 Polarization: -2.27 SS G_CDS: -2.27 Total: -4.54 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -31.57 -11.86 -43.43 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892879282.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.927 kcal (2) G-P(sol) polarization free energy of solvation -31.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds