Wall clock time and date at job start Wed Apr 1 2020 00:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.67985 * 2 1 4 4 C 1.53096 * 109.57622 * 239.67473 * 2 1 3 5 5 C 1.52578 * 109.96012 * 303.21918 * 4 2 1 6 6 H 1.09004 * 109.18683 * 49.62266 * 5 4 2 7 7 N 1.46495 * 109.22669 * 169.00167 * 5 4 2 8 8 C 1.34780 * 120.00103 * 206.23820 * 7 5 4 9 9 O 1.21587 * 119.99718 * 359.97438 * 8 7 5 10 10 N 1.34779 * 120.00165 * 180.02562 * 8 7 5 11 11 C 1.46497 * 119.99872 * 180.02562 * 10 8 7 12 12 C 1.53051 * 109.45788 * 275.02478 * 11 10 8 13 13 C 1.53194 * 109.31161 * 178.60385 * 12 11 10 14 14 N 1.46923 * 108.76589 * 54.65426 * 13 12 11 15 15 C 1.36937 * 120.63331 * 126.40462 * 14 13 12 16 16 H 1.08005 * 119.99599 * 331.81152 * 15 14 13 17 17 C 1.38810 * 120.00406 * 151.80607 * 15 14 13 18 18 N 1.31619 * 119.99986 * 343.08656 * 17 15 14 19 19 Si 1.86802 * 120.00064 * 163.07983 * 17 15 14 20 20 H 1.48498 * 109.46828 * 90.00576 * 19 17 15 21 21 H 1.48503 * 109.47136 * 210.00327 * 19 17 15 22 22 H 1.48500 * 109.47191 * 330.00849 * 19 17 15 23 23 C 1.46929 * 118.73977 * 306.38611 * 14 13 12 24 24 C 1.53045 * 109.45996 * 154.97442 * 11 10 8 25 25 C 1.52579 * 110.72672 * 289.32342 * 5 4 2 26 26 C 1.53102 * 109.95436 * 70.67687 * 25 5 4 27 27 S 1.81742 * 109.57482 * 120.32144 * 2 1 3 28 28 H 1.08997 * 109.47058 * 299.67572 * 1 2 3 29 29 H 1.08997 * 109.46711 * 59.68024 * 1 2 3 30 30 H 1.09004 * 109.47123 * 179.67708 * 1 2 3 31 31 H 1.08997 * 109.46823 * 180.31948 * 3 2 1 32 32 H 1.08999 * 109.47198 * 300.32243 * 3 2 1 33 33 H 1.09003 * 109.47153 * 60.32135 * 3 2 1 34 34 H 1.09000 * 109.39188 * 183.06439 * 4 2 1 35 35 H 1.09004 * 109.38555 * 63.36952 * 4 2 1 36 36 H 0.97000 * 120.00127 * 25.96110 * 7 5 4 37 37 H 0.97003 * 119.99955 * 0.02562 * 10 8 7 38 38 H 1.08997 * 109.46487 * 34.99727 * 11 10 8 39 39 H 1.09002 * 109.49210 * 298.56592 * 12 11 10 40 40 H 1.08994 * 109.49598 * 58.66398 * 12 11 10 41 41 H 1.08995 * 109.59482 * 294.86786 * 13 12 11 42 42 H 1.09001 * 109.70298 * 174.50344 * 13 12 11 43 43 H 0.97004 * 119.99619 * 179.97438 * 18 17 15 44 44 H 1.09006 * 109.58214 * 293.81770 * 23 14 13 45 45 H 1.09006 * 109.58829 * 173.39754 * 23 14 13 46 46 H 1.09000 * 109.49341 * 301.33435 * 24 11 10 47 47 H 1.08993 * 109.49875 * 61.39608 * 24 11 10 48 48 H 1.08996 * 109.38957 * 190.81793 * 25 5 4 49 49 H 1.08996 * 109.39323 * 310.52687 * 25 5 4 50 50 H 1.08994 * 109.58011 * 56.77893 * 26 25 5 51 51 H 1.09000 * 109.57385 * 177.04162 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0453 1.4406 0.0000 4 6 2.0430 -0.7283 -1.2451 5 6 1.4773 -2.1446 -1.2902 6 1 0.3987 -2.1046 -1.1375 7 7 1.7573 -2.7344 -2.6016 8 6 0.9575 -3.7035 -3.0893 9 8 0.0039 -4.0885 -2.4406 10 7 1.2154 -4.2466 -4.2956 11 6 0.3458 -5.2995 -4.8259 12 6 0.7976 -6.6565 -4.2809 13 6 -0.1351 -7.7507 -4.8096 14 7 -0.1725 -7.6719 -6.2762 15 6 0.0988 -8.7746 -7.0415 16 1 0.7552 -9.5451 -6.6646 17 6 -0.4698 -8.9022 -8.3013 18 7 -1.5070 -8.1630 -8.6332 19 14 0.2373 -10.1229 -9.5258 20 1 -0.4369 -11.4358 -9.3614 21 1 0.0170 -9.6228 -10.9067 22 1 1.6938 -10.2805 -9.2828 23 6 -0.5071 -6.3874 -6.9064 24 6 0.4295 -5.3084 -6.3540 25 6 2.1066 -3.0123 -0.2043 26 6 1.6016 -2.5738 1.1729 27 16 2.1389 -0.8645 1.4781 28 1 -0.3633 0.5088 0.8929 29 1 -0.3633 0.5188 -0.8871 30 1 -0.3633 -1.0277 -0.0058 31 1 3.1352 1.4366 -0.0057 32 1 1.6791 1.9575 -0.8871 33 1 1.6885 1.9541 0.8929 34 1 3.1316 -0.7742 -1.2147 35 1 1.7300 -0.1850 -2.1367 36 1 2.5159 -2.4248 -3.1207 37 1 1.9768 -3.9402 -4.8126 38 1 -0.6829 -5.1095 -4.5196 39 1 1.8177 -6.8583 -4.6078 40 1 0.7602 -6.6418 -3.1917 41 1 -1.1379 -7.6008 -4.4099 42 1 0.2370 -8.7291 -4.5057 43 1 -1.9040 -8.2520 -9.5138 44 1 -1.5405 -6.1264 -6.6776 45 1 -0.3782 -6.4654 -7.9860 46 1 0.1301 -4.3341 -6.7403 47 1 1.4531 -5.5226 -6.6610 48 1 1.8376 -4.0550 -0.3731 49 1 3.1910 -2.9091 -0.2418 50 1 0.5130 -2.6239 1.1958 51 1 2.0137 -3.2305 1.9391 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892879282.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:22:19 Heat of formation + Delta-G solvation = -43.830893 kcal Electronic energy + Delta-G solvation = -28395.559096 eV Core-core repulsion = 24648.023147 eV Total energy + Delta-G solvation = -3747.535949 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.188 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.38697 -39.58328 -38.58604 -36.02574 -35.57890 -34.17700 -33.37518 -31.75558 -31.10072 -29.32515 -28.36133 -26.90671 -25.55571 -24.02695 -23.72590 -22.54048 -21.68207 -21.22440 -21.03113 -19.45451 -18.64242 -17.70492 -17.41685 -16.87098 -16.33081 -16.20738 -15.87268 -15.69850 -15.36898 -15.30084 -15.05944 -14.93925 -14.74397 -14.67262 -14.31954 -14.15300 -14.06814 -13.64372 -13.21365 -13.13682 -13.01162 -12.88582 -12.71921 -12.61295 -12.51669 -12.48581 -12.23317 -12.13336 -12.02168 -11.88354 -11.81162 -11.56457 -11.39464 -11.36080 -11.20268 -10.60040 -10.56044 -10.30249 -9.75616 -8.71113 -8.68769 -7.88087 -5.33734 0.75341 1.48189 1.49346 1.51965 1.59469 1.65848 2.18179 2.51935 3.19210 3.29834 3.49556 3.66093 3.70354 3.79802 3.90457 3.94162 3.99698 4.06959 4.15253 4.29978 4.32350 4.34748 4.46429 4.60334 4.65034 4.69773 4.76869 4.80960 4.81556 4.84338 4.85730 4.90509 4.94808 4.99195 5.05953 5.06484 5.08371 5.16144 5.23847 5.29550 5.32606 5.46757 5.52121 5.61198 5.64540 5.70263 6.05640 6.38941 7.14291 7.14943 7.63034 7.83702 8.36805 9.19109 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.033251 B = 0.001997 C = 0.001955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.870848 B =14018.295539 C =14319.302283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.014 4.014 3 C -0.125 4.125 4 C -0.112 4.112 5 C 0.155 3.845 6 H 0.071 0.929 7 N -0.727 5.727 8 C 0.701 3.299 9 O -0.634 6.634 10 N -0.726 5.726 11 C 0.182 3.818 12 C -0.122 4.122 13 C 0.144 3.856 14 N -0.609 5.609 15 C -0.263 4.263 16 H 0.067 0.933 17 C -0.051 4.051 18 N -0.936 5.936 19 Si 0.969 3.031 20 H -0.287 1.287 21 H -0.291 1.291 22 H -0.269 1.269 23 C 0.178 3.822 24 C -0.127 4.127 25 C -0.125 4.125 26 C -0.074 4.074 27 S -0.280 6.280 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.047 0.953 31 H 0.069 0.931 32 H 0.087 0.913 33 H 0.064 0.936 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.412 0.588 37 H 0.410 0.590 38 H 0.054 0.946 39 H 0.065 0.935 40 H 0.056 0.944 41 H 0.006 0.994 42 H 0.057 0.943 43 H 0.251 0.749 44 H -0.006 1.006 45 H 0.064 0.936 46 H 0.076 0.924 47 H 0.071 0.929 48 H 0.058 0.942 49 H 0.086 0.914 50 H 0.078 0.922 51 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.620 21.036 16.108 28.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.124 4.124 3 C -0.183 4.183 4 C -0.151 4.151 5 C 0.050 3.950 6 H 0.089 0.911 7 N -0.382 5.382 8 C 0.401 3.599 9 O -0.515 6.515 10 N -0.381 5.381 11 C 0.077 3.923 12 C -0.162 4.162 13 C 0.018 3.982 14 N -0.333 5.333 15 C -0.393 4.393 16 H 0.085 0.915 17 C -0.246 4.246 18 N -0.582 5.582 19 Si 0.797 3.203 20 H -0.214 1.214 21 H -0.217 1.217 22 H -0.194 1.194 23 C 0.052 3.948 24 C -0.167 4.167 25 C -0.166 4.166 26 C -0.222 4.222 27 S -0.053 6.053 28 H 0.089 0.911 29 H 0.094 0.906 30 H 0.066 0.934 31 H 0.088 0.912 32 H 0.105 0.895 33 H 0.083 0.917 34 H 0.112 0.888 35 H 0.113 0.887 36 H 0.248 0.752 37 H 0.246 0.754 38 H 0.072 0.928 39 H 0.084 0.916 40 H 0.075 0.925 41 H 0.024 0.976 42 H 0.075 0.925 43 H 0.060 0.940 44 H 0.012 0.988 45 H 0.082 0.918 46 H 0.095 0.905 47 H 0.089 0.911 48 H 0.077 0.923 49 H 0.105 0.895 50 H 0.096 0.904 51 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 11.248 21.090 17.447 29.592 hybrid contribution -0.385 -1.358 -2.047 2.487 sum 10.863 19.732 15.400 27.285 Atomic orbital electron populations 1.22202 0.92760 1.02139 1.03530 1.22716 0.98176 0.98673 0.92814 1.21668 1.02012 0.91073 1.03564 1.22041 1.02374 0.92770 0.97958 1.20829 1.00506 0.92338 0.81342 0.91050 1.44964 1.32298 1.40139 1.20841 1.16147 0.82394 0.79887 0.81505 1.90901 1.33082 1.66603 1.60956 1.45128 1.33189 1.40987 1.18771 1.20464 0.92998 0.85696 0.93166 1.22168 0.99935 0.95021 0.99115 1.20964 0.95807 0.97249 0.84168 1.44357 1.81545 1.06866 1.00497 1.19503 1.21359 1.00145 0.98319 0.91537 1.25830 0.96279 1.00931 1.01545 1.70187 1.22478 1.44637 1.20849 0.85258 0.78536 0.78369 0.78143 1.21403 1.21713 1.19352 1.20575 0.93146 0.83406 0.97666 1.22247 1.01497 0.99658 0.93249 1.22060 1.01802 0.99812 0.92883 1.23354 1.03657 0.94830 1.00395 1.86933 1.77342 1.07668 1.33328 0.91088 0.90608 0.93383 0.91163 0.89478 0.91694 0.88819 0.88654 0.75163 0.75413 0.92758 0.91600 0.92503 0.97642 0.92494 0.93998 0.98818 0.91792 0.90496 0.91077 0.92318 0.89541 0.90381 0.86893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 8.03 71.98 0.58 -1.42 16 2 C -0.01 -0.17 0.87 -10.76 -0.01 -0.17 16 3 C -0.12 -1.10 8.51 71.98 0.61 -0.49 16 4 C -0.11 -1.25 4.06 30.49 0.12 -1.13 16 5 C 0.16 2.66 2.05 44.71 0.09 2.75 16 6 H 0.07 1.62 5.22 -2.38 -0.01 1.61 16 7 N -0.73 -12.90 5.05 -459.16 -2.32 -15.23 16 8 C 0.70 19.08 8.44 179.05 1.51 20.59 16 9 O -0.63 -23.52 15.65 -3.99 -0.06 -23.58 16 10 N -0.73 -18.41 5.08 -457.66 -2.33 -20.73 16 11 C 0.18 6.16 2.42 45.02 0.11 6.26 16 12 C -0.12 -4.39 5.65 30.68 0.17 -4.21 16 13 C 0.14 6.32 6.52 86.36 0.56 6.88 16 14 N -0.61 -30.84 2.99 -699.09 -2.09 -32.93 16 15 C -0.26 -14.46 9.58 84.03 0.81 -13.65 16 16 H 0.07 3.56 7.89 -2.91 -0.02 3.54 16 17 C -0.05 -2.81 4.92 84.86 0.42 -2.39 16 18 N -0.94 -55.10 11.20 21.65 0.24 -54.86 16 19 Si 0.97 44.37 29.59 68.60 2.03 46.40 16 20 H -0.29 -13.07 7.11 99.48 0.71 -12.37 16 21 H -0.29 -13.27 7.11 99.48 0.71 -12.57 16 22 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 23 C 0.18 8.49 5.30 86.36 0.46 8.95 16 24 C -0.13 -4.44 5.55 30.67 0.17 -4.27 16 25 C -0.13 -2.20 5.31 30.49 0.16 -2.04 16 26 C -0.07 -1.22 6.08 72.02 0.44 -0.79 16 27 S -0.28 -4.49 21.12 -56.49 -1.19 -5.68 16 28 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.05 0.82 5.15 -2.39 -0.01 0.81 16 31 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.09 0.87 8.06 -2.39 -0.02 0.85 16 35 H 0.10 0.87 8.14 -2.38 -0.02 0.85 16 36 H 0.41 4.51 8.61 -92.71 -0.80 3.71 16 37 H 0.41 7.49 8.62 -92.71 -0.80 6.69 16 38 H 0.05 2.17 7.58 -2.39 -0.02 2.15 16 39 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 40 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 41 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 42 H 0.06 2.43 7.93 -2.39 -0.02 2.41 16 43 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 44 H -0.01 -0.33 8.14 -2.38 -0.02 -0.35 16 45 H 0.06 3.40 6.06 -2.38 -0.01 3.38 16 46 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 47 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 48 H 0.06 1.34 8.09 -2.39 -0.02 1.32 16 49 H 0.09 1.32 8.06 -2.39 -0.02 1.30 16 50 H 0.08 1.43 7.43 -2.39 -0.02 1.41 16 51 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -70.01 398.13 -0.19 -70.20 By element: Atomic # 1 Polarization: 22.19 SS G_CDS: -0.67 Total: 21.51 kcal Atomic # 6 Polarization: 8.69 SS G_CDS: 6.20 Total: 14.90 kcal Atomic # 7 Polarization: -117.26 SS G_CDS: -6.50 Total: -123.75 kcal Atomic # 8 Polarization: -23.52 SS G_CDS: -0.06 Total: -23.58 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Atomic # 16 Polarization: -4.49 SS G_CDS: -1.19 Total: -5.68 kcal Total: -70.01 -0.19 -70.20 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892879282.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.372 kcal (2) G-P(sol) polarization free energy of solvation -70.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds