Wall clock time and date at job start Wed Apr 1 2020 00:22:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.57401 * 2 1 4 4 C 1.53096 * 109.57363 * 120.25523 * 2 1 3 5 5 C 1.52584 * 109.95442 * 182.83028 * 4 2 1 6 6 H 1.09002 * 109.22504 * 49.60742 * 5 4 2 7 7 N 1.46504 * 109.22743 * 169.00080 * 5 4 2 8 8 C 1.34769 * 120.00303 * 205.59837 * 7 5 4 9 9 O 1.21591 * 120.00329 * 4.99020 * 8 7 5 10 10 N 1.34775 * 120.00266 * 184.98422 * 8 7 5 11 11 C 1.47084 * 120.88582 * 174.49704 * 10 8 7 12 12 C 1.53701 * 108.27133 * 128.75469 * 11 10 8 13 13 N 1.46901 * 109.25674 * 54.09199 * 12 11 10 14 14 C 1.46896 * 111.00022 * 172.60249 * 13 12 11 15 15 C 1.50702 * 109.47174 * 294.29899 * 14 13 12 16 16 H 1.08000 * 119.99959 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00055 * 179.97438 * 15 14 13 18 18 N 1.31518 * 119.99996 * 359.97438 * 17 15 14 19 19 Si 1.86808 * 119.99924 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46793 * 60.00255 * 19 17 15 21 21 H 1.48497 * 109.46884 * 179.97438 * 19 17 15 22 22 H 1.48490 * 109.46908 * 300.00070 * 19 17 15 23 23 C 1.46903 * 111.26524 * 296.75083 * 13 12 11 24 24 C 1.47088 * 120.87925 * 354.78020 * 10 8 7 25 25 C 1.52576 * 110.69583 * 289.30412 * 5 4 2 26 26 C 1.53123 * 109.94392 * 70.73768 * 25 5 4 27 27 S 1.81741 * 108.80578 * 296.91257 * 26 25 5 28 28 H 1.09004 * 109.47285 * 299.74133 * 1 2 3 29 29 H 1.08996 * 109.47509 * 59.74256 * 1 2 3 30 30 H 1.09004 * 109.47154 * 179.74364 * 1 2 3 31 31 H 1.09000 * 109.46855 * 180.25588 * 3 2 1 32 32 H 1.08996 * 109.47049 * 300.25941 * 3 2 1 33 33 H 1.09001 * 109.47064 * 60.25616 * 3 2 1 34 34 H 1.08994 * 109.39329 * 62.68736 * 4 2 1 35 35 H 1.08996 * 109.31260 * 302.92781 * 4 2 1 36 36 H 0.97000 * 119.99420 * 25.60565 * 7 5 4 37 37 H 1.08994 * 109.63043 * 248.52621 * 11 10 8 38 38 H 1.09001 * 109.62240 * 9.10854 * 11 10 8 39 39 H 1.08998 * 109.65293 * 294.07925 * 12 11 10 40 40 H 1.09000 * 109.43737 * 173.96533 * 12 11 10 41 41 H 1.08999 * 109.47335 * 54.29555 * 14 13 12 42 42 H 1.08995 * 109.47476 * 174.29754 * 14 13 12 43 43 H 0.97000 * 119.99766 * 180.02562 * 18 17 15 44 44 H 1.09001 * 109.49326 * 303.14629 * 23 13 12 45 45 H 1.08996 * 109.49134 * 183.06924 * 23 13 12 46 46 H 1.08999 * 109.62910 * 350.89882 * 24 10 8 47 47 H 1.09005 * 109.62736 * 111.47718 * 24 10 8 48 48 H 1.09003 * 109.38993 * 190.83883 * 25 5 4 49 49 H 1.08996 * 109.39225 * 310.55194 * 25 5 4 50 50 H 1.08994 * 109.57277 * 177.12744 * 26 25 5 51 51 H 1.08998 * 109.71262 * 56.78712 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0426 1.4416 0.0000 4 6 2.0429 -0.7268 1.2460 5 6 3.5670 -0.6710 1.2910 6 1 3.8932 0.3575 1.1369 7 7 4.0282 -1.1317 2.6030 8 6 5.2158 -0.7147 3.0845 9 8 5.8629 0.1134 2.4729 10 7 5.6863 -1.2154 4.2440 11 6 7.0309 -0.8659 4.7269 12 6 6.9106 -0.3857 6.1820 13 7 6.2134 -1.4081 6.9735 14 6 6.2310 -1.0698 8.4029 15 6 7.6485 -1.1162 8.9127 16 1 8.4555 -1.3710 8.2418 17 6 7.9150 -0.8323 10.2353 18 7 6.9324 -0.5205 11.0519 19 14 9.6720 -0.8905 10.8673 20 1 10.5007 0.0867 10.1165 21 1 9.6899 -0.5473 12.3120 22 1 10.2219 -2.2565 10.6756 23 6 4.8382 -1.6054 6.4961 24 6 4.8710 -2.1307 5.0570 25 6 4.1713 -1.5577 0.2062 26 6 3.9292 -0.9355 -1.1718 27 16 2.1390 -0.8663 -1.4771 28 1 -0.3634 0.5098 0.8923 29 1 -0.3634 0.5178 -0.8876 30 1 -0.3634 -1.0277 -0.0046 31 1 3.1325 1.4396 -0.0046 32 1 1.6764 1.9574 -0.8876 33 1 1.6839 1.9548 0.8923 34 1 1.7196 -1.7673 1.2168 35 1 1.6368 -0.2465 2.1362 36 1 3.4787 -1.7371 3.1250 37 1 7.6764 -1.7429 4.6796 38 1 7.4457 -0.0688 4.1099 39 1 6.3472 0.5468 6.2149 40 1 7.9067 -0.2234 6.5939 41 1 5.8268 -0.0675 8.5441 42 1 5.6232 -1.7876 8.9537 43 1 7.1200 -0.3205 11.9823 44 1 4.3035 -0.6559 6.5246 45 1 4.3314 -2.3280 7.1356 46 1 3.8573 -2.1703 4.6584 47 1 5.3130 -3.1270 5.0409 48 1 5.2436 -1.6560 0.3749 49 1 3.7082 -2.5436 0.2452 50 1 4.4069 -1.5467 -1.9374 51 1 4.3435 0.0723 -1.1981 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000897854530.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:22:11 Heat of formation + Delta-G solvation = -23.882933 kcal Electronic energy + Delta-G solvation = -28528.333841 eV Core-core repulsion = 24781.662901 eV Total energy + Delta-G solvation = -3746.670940 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.188 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.51024 -38.63878 -37.36218 -34.92207 -34.45902 -32.91668 -32.30602 -30.70442 -29.00960 -27.91576 -27.82568 -25.57631 -24.83355 -23.25609 -22.36549 -21.71740 -20.68819 -20.61248 -19.35380 -18.02562 -16.78146 -16.72917 -16.32402 -15.57202 -15.28232 -15.13670 -14.79265 -14.54456 -14.48529 -14.30856 -14.10133 -13.86762 -13.83349 -13.60142 -13.54717 -13.07579 -12.81392 -12.60170 -12.33957 -12.22169 -12.11050 -12.02235 -11.84565 -11.54992 -11.31727 -11.24879 -11.10385 -10.86143 -10.78697 -10.70502 -10.61557 -10.52870 -10.10295 -9.93011 -9.86344 -9.31683 -9.24518 -8.50310 -8.37673 -8.01332 -7.35846 -6.08063 -4.10014 1.37755 2.15834 2.60554 3.22864 3.30826 3.35017 3.37738 3.78642 4.11576 4.27110 4.37250 4.46137 4.57797 4.61906 4.73829 4.76116 4.94452 5.00215 5.17689 5.18943 5.24606 5.26750 5.32128 5.33002 5.35884 5.39478 5.42525 5.48924 5.54397 5.60029 5.67176 5.71036 5.75755 5.78982 5.89781 5.96130 6.00239 6.15590 6.37139 6.39680 6.52800 6.65180 7.00474 7.19104 7.25630 7.71684 7.94552 7.98740 8.09733 8.45089 8.61945 8.96925 9.54613 11.02717 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.028722 B = 0.002083 C = 0.002023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.629685 B =13440.493571 C =13836.718653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.018 4.018 3 C -0.148 4.148 4 C -0.121 4.121 5 C 0.153 3.847 6 H 0.095 0.905 7 N -0.745 5.745 8 C 0.708 3.292 9 O -0.596 6.596 10 N -0.624 5.624 11 C 0.133 3.867 12 C 0.051 3.949 13 N -0.535 5.535 14 C 0.194 3.806 15 C -0.510 4.510 16 H 0.064 0.936 17 C 0.056 3.944 18 N -0.898 5.898 19 Si 0.899 3.101 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.276 1.276 23 C 0.041 3.959 24 C 0.119 3.881 25 C -0.131 4.131 26 C -0.077 4.077 27 S -0.262 6.262 28 H 0.071 0.929 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.395 0.605 37 H 0.070 0.930 38 H 0.089 0.911 39 H 0.025 0.975 40 H 0.097 0.903 41 H -0.009 1.009 42 H 0.031 0.969 43 H 0.262 0.738 44 H 0.026 0.974 45 H 0.081 0.919 46 H 0.069 0.931 47 H 0.075 0.925 48 H 0.081 0.919 49 H 0.076 0.924 50 H 0.106 0.894 51 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.771 -1.575 -22.901 26.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.128 4.128 3 C -0.207 4.207 4 C -0.161 4.161 5 C 0.048 3.952 6 H 0.112 0.888 7 N -0.402 5.402 8 C 0.410 3.590 9 O -0.474 6.474 10 N -0.361 5.361 11 C 0.010 3.990 12 C -0.078 4.078 13 N -0.260 5.260 14 C 0.070 3.930 15 C -0.549 4.549 16 H 0.082 0.918 17 C -0.146 4.146 18 N -0.538 5.538 19 Si 0.727 3.273 20 H -0.202 1.202 21 H -0.214 1.214 22 H -0.201 1.201 23 C -0.089 4.089 24 C -0.005 4.005 25 C -0.172 4.172 26 C -0.226 4.226 27 S -0.034 6.034 28 H 0.090 0.910 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.232 0.768 37 H 0.089 0.911 38 H 0.107 0.893 39 H 0.043 0.957 40 H 0.115 0.885 41 H 0.009 0.991 42 H 0.049 0.951 43 H 0.072 0.928 44 H 0.044 0.956 45 H 0.099 0.901 46 H 0.087 0.913 47 H 0.094 0.906 48 H 0.099 0.901 49 H 0.094 0.906 50 H 0.124 0.876 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -12.636 -1.763 -24.095 27.265 hybrid contribution 0.853 0.821 1.958 2.288 sum -11.783 -0.942 -22.138 25.096 Atomic orbital electron populations 1.21669 0.90981 1.03095 1.02902 1.22636 0.99150 0.97340 0.93714 1.22214 1.01809 0.93631 1.03025 1.22096 0.94478 1.01944 0.97580 1.20796 0.92820 0.99745 0.81858 0.88765 1.45293 1.21030 1.53365 1.20540 1.15822 0.81191 0.81000 0.80997 1.90883 1.59561 1.36086 1.60918 1.47420 1.18059 1.49468 1.21157 1.21846 0.81437 1.00936 0.94810 1.22444 1.01273 0.92559 0.91564 1.62082 1.12313 1.45277 1.06331 1.19715 0.97982 0.94691 0.80652 1.21099 0.92712 1.46489 0.94574 0.91822 1.24994 0.97427 0.95296 0.96848 1.69946 1.31408 1.47212 1.05202 0.86543 0.84559 0.78611 0.77608 1.20220 1.21369 1.20115 1.22375 0.92521 0.99682 0.94321 1.21765 0.93807 0.93722 0.91213 1.22147 1.02785 0.99693 0.92543 1.23412 0.93816 1.04923 1.00451 1.86868 1.07498 1.77242 1.31811 0.90974 0.91528 0.91513 0.91765 0.91252 0.91456 0.90035 0.89968 0.76850 0.91130 0.89312 0.95717 0.88509 0.99148 0.95083 0.92811 0.95586 0.90101 0.91318 0.90625 0.90087 0.90557 0.87576 0.89500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.77 8.51 37.16 0.32 -0.46 16 2 C -0.02 -0.13 0.87 -90.57 -0.08 -0.21 16 3 C -0.15 -1.10 8.02 37.16 0.30 -0.80 16 4 C -0.12 -0.89 4.05 -26.89 -0.11 -1.00 16 5 C 0.15 1.46 2.08 -68.36 -0.14 1.32 16 6 H 0.09 1.09 5.19 -51.93 -0.27 0.82 16 7 N -0.75 -8.02 4.96 -59.10 -0.29 -8.32 16 8 C 0.71 10.47 8.20 -86.93 -0.71 9.76 16 9 O -0.60 -10.79 15.42 5.29 0.08 -10.71 16 10 N -0.62 -9.23 3.00 -177.90 -0.53 -9.76 16 11 C 0.13 2.15 6.64 -3.36 -0.02 2.13 16 12 C 0.05 0.97 5.47 -3.46 -0.02 0.95 16 13 N -0.53 -10.91 4.62 -235.47 -1.09 -11.99 16 14 C 0.19 4.88 4.72 -4.98 -0.02 4.86 16 15 C -0.51 -13.89 8.41 -34.44 -0.29 -14.18 16 16 H 0.06 1.70 7.13 -52.49 -0.37 1.33 16 17 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 18 N -0.90 -26.21 13.29 55.43 0.74 -25.47 16 19 Si 0.90 21.25 29.54 -169.99 -5.02 16.23 16 20 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 21 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 23 C 0.04 0.66 5.62 -3.70 -0.02 0.64 16 24 C 0.12 1.52 6.53 -3.60 -0.02 1.50 16 25 C -0.13 -1.18 5.31 -26.88 -0.14 -1.32 16 26 C -0.08 -0.63 6.08 37.22 0.23 -0.41 16 27 S -0.26 -2.24 21.12 -107.50 -2.27 -4.51 16 28 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.55 5.19 -51.93 -0.27 0.28 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.08 0.56 8.05 -51.93 -0.42 0.14 16 35 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.40 3.43 6.14 -40.82 -0.25 3.18 16 37 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.09 1.46 7.04 -51.93 -0.37 1.10 16 39 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.10 1.97 6.67 -51.93 -0.35 1.62 16 41 H -0.01 -0.25 8.12 -51.93 -0.42 -0.68 16 42 H 0.03 0.83 7.97 -51.93 -0.41 0.41 16 43 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 44 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 45 H 0.08 1.26 7.99 -51.93 -0.41 0.84 16 46 H 0.07 0.65 5.74 -51.93 -0.30 0.35 16 47 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 48 H 0.08 0.88 8.07 -51.93 -0.42 0.46 16 49 H 0.08 0.64 8.05 -51.93 -0.42 0.22 16 50 H 0.11 0.77 8.14 -51.93 -0.42 0.34 16 51 H 0.09 0.73 7.44 -51.93 -0.39 0.35 16 LS Contribution 395.90 15.07 5.97 5.97 Total: -1.00 -31.46 395.90 -12.12 -43.58 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -8.85 Total: 0.76 kcal Atomic # 6 Polarization: 5.08 SS G_CDS: -0.84 Total: 4.24 kcal Atomic # 7 Polarization: -54.37 SS G_CDS: -1.18 Total: -55.55 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: 0.08 Total: -10.71 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: -2.24 SS G_CDS: -2.27 Total: -4.51 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -31.46 -12.12 -43.58 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897854530.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.693 kcal (2) G-P(sol) polarization free energy of solvation -31.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds