Wall clock time and date at job start Wed Apr 1 2020 00:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.57401 * 2 1 4 4 C 1.53096 * 109.57363 * 120.25523 * 2 1 3 5 5 C 1.52584 * 109.95442 * 182.83028 * 4 2 1 6 6 H 1.09002 * 109.22504 * 49.60742 * 5 4 2 7 7 N 1.46504 * 109.22743 * 169.00080 * 5 4 2 8 8 C 1.34769 * 120.00303 * 205.59837 * 7 5 4 9 9 O 1.21591 * 120.00329 * 4.99020 * 8 7 5 10 10 N 1.34775 * 120.00266 * 184.98422 * 8 7 5 11 11 C 1.47084 * 120.88582 * 174.49704 * 10 8 7 12 12 C 1.53701 * 108.27133 * 128.75469 * 11 10 8 13 13 N 1.46901 * 109.25674 * 54.09199 * 12 11 10 14 14 C 1.46896 * 111.00022 * 172.60249 * 13 12 11 15 15 C 1.50702 * 109.47174 * 294.29899 * 14 13 12 16 16 H 1.08000 * 119.99959 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00055 * 179.97438 * 15 14 13 18 18 N 1.31518 * 119.99996 * 359.97438 * 17 15 14 19 19 Si 1.86808 * 119.99924 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46793 * 60.00255 * 19 17 15 21 21 H 1.48497 * 109.46884 * 179.97438 * 19 17 15 22 22 H 1.48490 * 109.46908 * 300.00070 * 19 17 15 23 23 C 1.46903 * 111.26524 * 296.75083 * 13 12 11 24 24 C 1.47088 * 120.87925 * 354.78020 * 10 8 7 25 25 C 1.52576 * 110.69583 * 289.30412 * 5 4 2 26 26 C 1.53123 * 109.94392 * 70.73768 * 25 5 4 27 27 S 1.81741 * 108.80578 * 296.91257 * 26 25 5 28 28 H 1.09004 * 109.47285 * 299.74133 * 1 2 3 29 29 H 1.08996 * 109.47509 * 59.74256 * 1 2 3 30 30 H 1.09004 * 109.47154 * 179.74364 * 1 2 3 31 31 H 1.09000 * 109.46855 * 180.25588 * 3 2 1 32 32 H 1.08996 * 109.47049 * 300.25941 * 3 2 1 33 33 H 1.09001 * 109.47064 * 60.25616 * 3 2 1 34 34 H 1.08994 * 109.39329 * 62.68736 * 4 2 1 35 35 H 1.08996 * 109.31260 * 302.92781 * 4 2 1 36 36 H 0.97000 * 119.99420 * 25.60565 * 7 5 4 37 37 H 1.08994 * 109.63043 * 248.52621 * 11 10 8 38 38 H 1.09001 * 109.62240 * 9.10854 * 11 10 8 39 39 H 1.08998 * 109.65293 * 294.07925 * 12 11 10 40 40 H 1.09000 * 109.43737 * 173.96533 * 12 11 10 41 41 H 1.08999 * 109.47335 * 54.29555 * 14 13 12 42 42 H 1.08995 * 109.47476 * 174.29754 * 14 13 12 43 43 H 0.97000 * 119.99766 * 180.02562 * 18 17 15 44 44 H 1.09001 * 109.49326 * 303.14629 * 23 13 12 45 45 H 1.08996 * 109.49134 * 183.06924 * 23 13 12 46 46 H 1.08999 * 109.62910 * 350.89882 * 24 10 8 47 47 H 1.09005 * 109.62736 * 111.47718 * 24 10 8 48 48 H 1.09003 * 109.38993 * 190.83883 * 25 5 4 49 49 H 1.08996 * 109.39225 * 310.55194 * 25 5 4 50 50 H 1.08994 * 109.57277 * 177.12744 * 26 25 5 51 51 H 1.08998 * 109.71262 * 56.78712 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0426 1.4416 0.0000 4 6 2.0429 -0.7268 1.2460 5 6 3.5670 -0.6710 1.2910 6 1 3.8932 0.3575 1.1369 7 7 4.0282 -1.1317 2.6030 8 6 5.2158 -0.7147 3.0845 9 8 5.8629 0.1134 2.4729 10 7 5.6863 -1.2154 4.2440 11 6 7.0309 -0.8659 4.7269 12 6 6.9106 -0.3857 6.1820 13 7 6.2134 -1.4081 6.9735 14 6 6.2310 -1.0698 8.4029 15 6 7.6485 -1.1162 8.9127 16 1 8.4555 -1.3710 8.2418 17 6 7.9150 -0.8323 10.2353 18 7 6.9324 -0.5205 11.0519 19 14 9.6720 -0.8905 10.8673 20 1 10.5007 0.0867 10.1165 21 1 9.6899 -0.5473 12.3120 22 1 10.2219 -2.2565 10.6756 23 6 4.8382 -1.6054 6.4961 24 6 4.8710 -2.1307 5.0570 25 6 4.1713 -1.5577 0.2062 26 6 3.9292 -0.9355 -1.1718 27 16 2.1390 -0.8663 -1.4771 28 1 -0.3634 0.5098 0.8923 29 1 -0.3634 0.5178 -0.8876 30 1 -0.3634 -1.0277 -0.0046 31 1 3.1325 1.4396 -0.0046 32 1 1.6764 1.9574 -0.8876 33 1 1.6839 1.9548 0.8923 34 1 1.7196 -1.7673 1.2168 35 1 1.6368 -0.2465 2.1362 36 1 3.4787 -1.7371 3.1250 37 1 7.6764 -1.7429 4.6796 38 1 7.4457 -0.0688 4.1099 39 1 6.3472 0.5468 6.2149 40 1 7.9067 -0.2234 6.5939 41 1 5.8268 -0.0675 8.5441 42 1 5.6232 -1.7876 8.9537 43 1 7.1200 -0.3205 11.9823 44 1 4.3035 -0.6559 6.5246 45 1 4.3314 -2.3280 7.1356 46 1 3.8573 -2.1703 4.6584 47 1 5.3130 -3.1270 5.0409 48 1 5.2436 -1.6560 0.3749 49 1 3.7082 -2.5436 0.2452 50 1 4.4069 -1.5467 -1.9374 51 1 4.3435 0.0723 -1.1981 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000897854530.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:22:10 Heat of formation + Delta-G solvation = -43.510803 kcal Electronic energy + Delta-G solvation = -28529.184969 eV Core-core repulsion = 24781.662901 eV Total energy + Delta-G solvation = -3747.522069 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.188 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.62621 -39.66290 -38.56882 -35.99821 -35.71717 -34.45720 -33.62257 -32.00200 -30.21010 -29.19697 -28.36446 -27.19360 -25.66467 -24.57275 -23.97285 -22.76428 -21.89966 -21.35149 -20.50318 -19.17268 -18.49985 -17.66035 -17.46730 -16.85202 -16.59139 -16.16872 -15.96244 -15.87766 -15.53163 -15.43732 -15.17353 -15.05546 -14.91710 -14.72341 -14.36397 -14.19019 -14.05818 -13.69276 -13.50587 -13.14932 -13.06934 -12.90249 -12.77589 -12.72066 -12.57197 -12.49172 -12.38273 -12.31225 -12.20198 -12.12220 -11.85050 -11.72269 -11.40158 -11.36421 -11.18201 -10.61735 -10.60543 -10.27528 -9.62697 -9.05533 -8.68523 -8.21100 -6.30914 0.75387 1.42368 1.44835 1.51961 1.52441 1.54048 2.06683 2.40281 2.78835 3.11165 3.21837 3.47980 3.67332 3.77952 3.90634 3.94497 3.97887 4.04673 4.12516 4.15996 4.24543 4.29445 4.30563 4.42743 4.57596 4.59746 4.68875 4.70873 4.76305 4.79836 4.83282 4.84323 4.89589 4.93630 4.94280 5.00796 5.01723 5.06885 5.16325 5.21665 5.23377 5.31218 5.43460 5.47913 5.63185 5.90903 6.02955 6.24732 6.57549 6.84366 6.91023 7.38845 7.49203 8.89751 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.028722 B = 0.002083 C = 0.002023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.629685 B =13440.493571 C =13836.718653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.013 4.013 3 C -0.147 4.147 4 C -0.114 4.114 5 C 0.154 3.846 6 H 0.073 0.927 7 N -0.728 5.728 8 C 0.706 3.294 9 O -0.632 6.632 10 N -0.628 5.628 11 C 0.145 3.855 12 C 0.057 3.943 13 N -0.537 5.537 14 C 0.209 3.791 15 C -0.524 4.524 16 H 0.065 0.935 17 C 0.002 3.998 18 N -0.934 5.934 19 Si 0.968 3.032 20 H -0.269 1.269 21 H -0.285 1.285 22 H -0.266 1.266 23 C 0.037 3.963 24 C 0.127 3.873 25 C -0.124 4.124 26 C -0.073 4.073 27 S -0.278 6.278 28 H 0.084 0.916 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.049 0.951 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.409 0.591 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.007 0.993 40 H 0.079 0.921 41 H -0.043 1.043 42 H 0.011 0.989 43 H 0.264 0.736 44 H 0.017 0.983 45 H 0.090 0.910 46 H 0.110 0.890 47 H 0.088 0.912 48 H 0.061 0.939 49 H 0.087 0.913 50 H 0.115 0.885 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.531 -2.874 -23.994 27.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.124 4.124 3 C -0.206 4.206 4 C -0.153 4.153 5 C 0.048 3.952 6 H 0.091 0.909 7 N -0.385 5.385 8 C 0.408 3.592 9 O -0.514 6.514 10 N -0.365 5.365 11 C 0.022 3.978 12 C -0.072 4.072 13 N -0.262 5.262 14 C 0.083 3.917 15 C -0.562 4.562 16 H 0.084 0.916 17 C -0.196 4.196 18 N -0.575 5.575 19 Si 0.792 3.208 20 H -0.194 1.194 21 H -0.211 1.211 22 H -0.191 1.191 23 C -0.092 4.092 24 C 0.005 3.995 25 C -0.164 4.164 26 C -0.222 4.222 27 S -0.051 6.051 28 H 0.103 0.897 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.068 0.932 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.113 0.887 35 H 0.109 0.891 36 H 0.247 0.753 37 H 0.099 0.901 38 H 0.103 0.897 39 H 0.026 0.974 40 H 0.097 0.903 41 H -0.025 1.025 42 H 0.029 0.971 43 H 0.073 0.927 44 H 0.035 0.965 45 H 0.108 0.892 46 H 0.128 0.872 47 H 0.106 0.894 48 H 0.080 0.920 49 H 0.106 0.894 50 H 0.134 0.866 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -13.439 -3.094 -25.220 28.744 hybrid contribution 1.018 1.264 2.254 2.778 sum -12.421 -1.830 -22.965 26.173 Atomic orbital electron populations 1.21672 0.89681 1.03528 1.03512 1.22691 1.00024 0.96792 0.92864 1.22196 1.00858 0.94078 1.03440 1.22056 0.92455 1.02896 0.97932 1.20876 0.94391 0.98665 0.81232 0.90911 1.45161 1.19636 1.52800 1.20918 1.15949 0.81911 0.80611 0.80721 1.90864 1.60867 1.37729 1.61903 1.47418 1.17697 1.49803 1.21549 1.21585 0.82738 1.01150 0.92355 1.22359 0.99806 0.91769 0.93281 1.62006 1.15128 1.45100 1.03988 1.19362 0.96579 0.92135 0.83598 1.21439 0.93673 1.46174 0.94947 0.91637 1.25899 1.01768 0.94805 0.97143 1.70073 1.33671 1.48187 1.05537 0.85455 0.79306 0.79053 0.76938 1.19416 1.21051 1.19114 1.22532 0.90025 0.99723 0.96927 1.21847 0.95947 0.93301 0.88446 1.22057 1.01497 1.00124 0.92724 1.23365 0.93828 1.04665 1.00321 1.86940 1.07587 1.77405 1.33127 0.89726 0.91585 0.91146 0.93235 0.90970 0.90920 0.88718 0.89091 0.75266 0.90113 0.89691 0.97448 0.90295 1.02541 0.97051 0.92707 0.96501 0.89179 0.87204 0.89353 0.92044 0.89448 0.86644 0.90227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.20 8.51 71.98 0.61 -0.59 16 2 C -0.01 -0.17 0.87 -10.76 -0.01 -0.18 16 3 C -0.15 -2.03 8.02 71.98 0.58 -1.45 16 4 C -0.11 -1.37 4.05 30.49 0.12 -1.25 16 5 C 0.15 2.67 2.08 44.71 0.09 2.77 16 6 H 0.07 1.65 5.19 -2.39 -0.01 1.64 16 7 N -0.73 -14.02 4.96 -459.15 -2.28 -16.30 16 8 C 0.71 19.93 8.20 179.06 1.47 21.40 16 9 O -0.63 -22.77 15.42 -4.00 -0.06 -22.83 16 10 N -0.63 -17.60 3.00 -835.02 -2.51 -20.11 16 11 C 0.15 4.65 6.64 86.50 0.57 5.22 16 12 C 0.06 2.22 5.47 86.54 0.47 2.69 16 13 N -0.54 -22.07 4.62 -898.89 -4.15 -26.22 16 14 C 0.21 10.86 4.72 85.56 0.40 11.26 16 15 C -0.52 -29.01 8.41 25.60 0.22 -28.79 16 16 H 0.07 3.53 7.13 -2.91 -0.02 3.51 16 17 C 0.00 0.11 5.46 84.65 0.46 0.57 16 18 N -0.93 -55.54 13.29 21.45 0.28 -55.26 16 19 Si 0.97 43.67 29.54 68.60 2.03 45.70 16 20 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 21 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 22 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 23 C 0.04 1.17 5.62 86.38 0.49 1.66 16 24 C 0.13 2.92 6.53 86.34 0.56 3.48 16 25 C -0.12 -2.05 5.31 30.49 0.16 -1.89 16 26 C -0.07 -1.13 6.08 72.02 0.44 -0.69 16 27 S -0.28 -4.33 21.12 -56.49 -1.19 -5.53 16 28 H 0.08 0.62 8.14 -2.38 -0.02 0.60 16 29 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.07 0.64 8.14 -2.38 -0.02 0.63 16 31 H 0.05 0.84 5.19 -2.39 -0.01 0.82 16 32 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.09 0.95 8.05 -2.39 -0.02 0.93 16 35 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.41 5.60 6.14 -92.71 -0.57 5.03 16 37 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 38 H 0.08 2.81 7.04 -2.39 -0.02 2.79 16 39 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 40 H 0.08 3.31 6.67 -2.39 -0.02 3.30 16 41 H -0.04 -2.48 8.12 -2.39 -0.02 -2.50 16 42 H 0.01 0.63 7.97 -2.39 -0.02 0.61 16 43 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 44 H 0.02 0.57 8.14 -2.39 -0.02 0.55 16 45 H 0.09 2.69 7.99 -2.39 -0.02 2.67 16 46 H 0.11 1.63 5.74 -2.39 -0.01 1.62 16 47 H 0.09 1.90 8.14 -2.38 -0.02 1.88 16 48 H 0.06 1.28 8.07 -2.39 -0.02 1.27 16 49 H 0.09 1.26 8.05 -2.39 -0.02 1.24 16 50 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16 51 H 0.08 1.34 7.44 -2.39 -0.02 1.32 16 Total: -1.00 -69.61 395.90 -0.90 -70.51 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: 0.34 Total: 15.82 kcal Atomic # 6 Polarization: 7.57 SS G_CDS: 6.64 Total: 14.22 kcal Atomic # 7 Polarization: -109.23 SS G_CDS: -8.65 Total: -117.88 kcal Atomic # 8 Polarization: -22.77 SS G_CDS: -0.06 Total: -22.83 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Atomic # 16 Polarization: -4.33 SS G_CDS: -1.19 Total: -5.53 kcal Total: -69.61 -0.90 -70.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897854530.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.998 kcal (2) G-P(sol) polarization free energy of solvation -69.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds