Wall clock time and date at job start Wed Apr 1 2020 00:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.35738 * 120.33637 * 2 1 4 4 C 1.40825 * 119.72280 * 180.02562 * 3 2 1 5 5 C 1.34538 * 120.58214 * 359.97438 * 4 3 2 6 6 N 1.37440 * 120.74252 * 0.03228 * 5 4 3 7 7 C 1.35133 * 131.28394 * 179.97438 * 6 5 4 8 8 C 1.38051 * 108.76978 * 179.97438 * 7 6 5 9 9 C 1.47498 * 126.37312 * 180.02562 * 8 7 6 10 10 O 1.21597 * 120.00174 * 180.02562 * 9 8 7 11 11 N 1.34779 * 120.00098 * 0.02936 * 9 8 7 12 12 C 1.46492 * 120.00075 * 180.02562 * 11 9 8 13 13 C 1.53001 * 109.46978 * 179.97438 * 12 11 9 14 14 C 1.53041 * 109.46230 * 295.02601 * 13 12 11 15 15 C 1.53190 * 109.31193 * 178.60198 * 14 13 12 16 16 N 1.46928 * 108.76803 * 54.65699 * 15 14 13 17 17 C 1.36936 * 120.63098 * 126.40756 * 16 15 14 18 18 H 1.07994 * 119.99741 * 331.81995 * 17 16 15 19 19 C 1.38809 * 119.99929 * 151.82693 * 17 16 15 20 20 N 1.31623 * 119.99954 * 343.06673 * 19 17 16 21 21 Si 1.86795 * 120.00102 * 163.07049 * 19 17 16 22 22 H 1.48504 * 109.47580 * 89.99588 * 21 19 17 23 23 H 1.48499 * 109.47387 * 209.99844 * 21 19 17 24 24 H 1.48502 * 109.47031 * 329.99660 * 21 19 17 25 25 C 1.46924 * 118.73689 * 306.38138 * 16 15 14 26 26 C 1.53039 * 109.46079 * 174.97030 * 13 12 11 27 27 C 1.41200 * 107.25843 * 0.26830 * 8 7 6 28 28 C 1.37944 * 119.81182 * 359.96803 * 6 5 4 29 29 H 1.08998 * 109.46961 * 269.97650 * 1 2 3 30 30 H 1.08992 * 109.46998 * 29.97582 * 1 2 3 31 31 H 1.08997 * 109.46833 * 149.97958 * 1 2 3 32 32 H 1.07998 * 120.13869 * 0.02562 * 3 2 1 33 33 H 1.07996 * 119.71132 * 179.97438 * 4 3 2 34 34 H 1.08003 * 119.62852 * 180.02562 * 5 4 3 35 35 H 1.08002 * 125.61395 * 0.02562 * 7 6 5 36 36 H 0.97006 * 119.99571 * 359.97438 * 11 9 8 37 37 H 1.08998 * 109.47574 * 59.99866 * 12 11 9 38 38 H 1.09005 * 109.47188 * 299.99261 * 12 11 9 39 39 H 1.09007 * 109.45957 * 54.99749 * 13 12 11 40 40 H 1.09005 * 109.49545 * 298.56737 * 14 13 12 41 41 H 1.08999 * 109.49919 * 58.65857 * 14 13 12 42 42 H 1.09000 * 109.59793 * 294.86031 * 15 14 13 43 43 H 1.08999 * 109.70159 * 174.50656 * 15 14 13 44 44 H 0.97000 * 119.99986 * 180.02562 * 20 19 17 45 45 H 1.09008 * 109.58790 * 293.82267 * 25 16 15 46 46 H 1.08997 * 109.70498 * 173.46900 * 25 16 15 47 47 H 1.08998 * 109.49955 * 301.33874 * 26 13 12 48 48 H 1.09001 * 109.50098 * 61.40551 * 26 13 12 49 49 H 1.07998 * 126.57230 * 179.69578 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1926 1.1715 0.0000 4 6 3.6008 1.1564 -0.0005 5 6 4.2728 -0.0091 -0.0006 6 7 3.6005 -1.2078 -0.0007 7 6 4.0499 -2.4822 -0.0012 8 6 2.9650 -3.3358 -0.0005 9 6 3.0119 -4.8100 -0.0002 10 8 1.9788 -5.4513 -0.0001 11 7 4.2000 -5.4465 0.0000 12 6 4.2466 -6.9106 -0.0003 13 6 5.7046 -7.3745 -0.0006 14 6 6.3754 -6.9471 -1.3081 15 6 7.8440 -7.3825 -1.2900 16 7 7.9058 -8.8262 -1.0242 17 6 8.5935 -9.6613 -1.8637 18 1 8.7035 -9.4068 -2.9074 19 6 9.1488 -10.8351 -1.3732 20 7 9.3131 -10.9940 -0.0770 21 14 9.6632 -12.1892 -2.5527 22 1 11.0768 -11.9823 -2.9579 23 1 9.5283 -13.5073 -1.8822 24 1 8.7933 -12.1545 -3.7558 25 6 7.2164 -9.3566 0.1598 26 6 5.7548 -8.8988 0.1257 27 6 1.8020 -2.5352 -0.0059 28 6 2.2211 -1.2203 -0.0002 29 1 -0.3633 -0.0004 1.0277 30 1 -0.3633 0.8901 -0.5134 31 1 -0.3633 -0.8898 -0.5141 32 1 1.6604 2.1113 0.0004 33 1 4.1461 2.0886 -0.0010 34 1 5.3529 -0.0026 -0.0006 35 1 5.0871 -2.7832 -0.0012 36 1 5.0242 -4.9349 -0.0004 37 1 3.7449 -7.2901 -0.8904 38 1 3.7445 -7.2903 0.8896 39 1 6.2296 -6.9229 0.8413 40 1 5.8664 -7.4182 -2.1490 41 1 6.3186 -5.8633 -1.4089 42 1 8.3755 -6.8433 -0.5058 43 1 8.3026 -7.1687 -2.2554 44 1 9.7016 -11.8140 0.2658 45 1 7.6967 -8.9785 1.0624 46 1 7.2584 -10.4458 0.1525 47 1 5.2563 -9.2043 1.0456 48 1 5.2513 -9.3514 -0.7286 49 1 0.7801 -2.8847 -0.0115 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000933483676.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:11:27 Heat of formation + Delta-G solvation = 45.557713 kcal Electronic energy + Delta-G solvation = -28606.846986 eV Core-core repulsion = 24727.743267 eV Total energy + Delta-G solvation = -3879.103719 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.54413 -39.51013 -37.79513 -36.91701 -34.91055 -34.43192 -32.85173 -31.06335 -30.51474 -29.71324 -28.84583 -27.29111 -26.81946 -24.46231 -23.31168 -22.32454 -22.21346 -21.69764 -20.95143 -19.92720 -19.04862 -18.07952 -17.21198 -16.68845 -16.36933 -15.89260 -15.61243 -15.42722 -15.02708 -14.77589 -14.52313 -14.03539 -13.91728 -13.68751 -13.53580 -13.50959 -13.36283 -13.11896 -13.11647 -12.53401 -12.31734 -12.26231 -12.06301 -11.87106 -11.86749 -11.45904 -11.31441 -10.98363 -10.70111 -10.49348 -10.46187 -10.24351 -10.20521 -10.03900 -9.86077 -9.53406 -9.42230 -9.02166 -8.74065 -8.45840 -7.67622 -6.65597 -5.78198 -3.20390 0.39794 1.00985 1.93036 2.33001 3.10034 3.30538 3.37863 3.45141 3.47808 3.51363 4.08926 4.30333 4.41991 4.50572 4.56243 4.62137 4.80290 5.05615 5.07811 5.14004 5.21024 5.22557 5.27686 5.39804 5.42808 5.47633 5.57834 5.60604 5.63435 5.75449 5.90023 5.97298 5.98975 6.02748 6.08549 6.18503 6.33703 6.41191 6.45819 6.51710 6.53558 6.62027 6.71718 6.78347 6.82996 6.90649 6.99127 7.38475 7.61469 7.67361 7.80453 8.32291 8.46390 9.22567 9.86189 10.42899 11.30329 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.025680 B = 0.001892 C = 0.001812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.084689 B =14797.150992 C =15451.120160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.038 4.038 3 C -0.144 4.144 4 C -0.129 4.129 5 C 0.032 3.968 6 N -0.336 5.336 7 C -0.009 4.009 8 C -0.165 4.165 9 C 0.583 3.417 10 O -0.542 6.542 11 N -0.721 5.721 12 C 0.124 3.876 13 C -0.090 4.090 14 C -0.127 4.127 15 C 0.145 3.855 16 N -0.592 5.592 17 C -0.251 4.251 18 H 0.064 0.936 19 C 0.001 3.999 20 N -0.903 5.903 21 Si 0.901 3.099 22 H -0.287 1.287 23 H -0.289 1.289 24 H -0.279 1.279 25 C 0.172 3.828 26 C -0.133 4.133 27 C -0.133 4.133 28 C 0.026 3.974 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.133 0.867 33 H 0.146 0.854 34 H 0.162 0.838 35 H 0.177 0.823 36 H 0.398 0.602 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.068 0.932 40 H 0.060 0.940 41 H 0.046 0.954 42 H 0.015 0.985 43 H 0.052 0.948 44 H 0.253 0.747 45 H 0.017 0.983 46 H 0.088 0.912 47 H 0.051 0.949 48 H 0.058 0.942 49 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.561 25.799 2.136 29.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.039 4.039 3 C -0.164 4.164 4 C -0.149 4.149 5 C -0.086 4.086 6 N 0.001 4.999 7 C -0.143 4.143 8 C -0.173 4.173 9 C 0.370 3.630 10 O -0.420 6.420 11 N -0.372 5.372 12 C 0.001 3.999 13 C -0.109 4.109 14 C -0.166 4.166 15 C 0.019 3.981 16 N -0.315 5.315 17 C -0.381 4.381 18 H 0.082 0.918 19 C -0.197 4.197 20 N -0.548 5.548 21 Si 0.731 3.269 22 H -0.214 1.214 23 H -0.216 1.216 24 H -0.205 1.205 25 C 0.046 3.954 26 C -0.173 4.173 27 C -0.157 4.157 28 C -0.079 4.079 29 H 0.096 0.904 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.151 0.849 33 H 0.163 0.837 34 H 0.180 0.820 35 H 0.194 0.806 36 H 0.232 0.768 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.087 0.913 40 H 0.079 0.921 41 H 0.064 0.936 42 H 0.033 0.967 43 H 0.071 0.929 44 H 0.063 0.937 45 H 0.035 0.965 46 H 0.106 0.894 47 H 0.070 0.930 48 H 0.076 0.924 49 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -14.001 25.316 2.212 29.014 hybrid contribution 0.973 -0.396 -0.511 1.169 sum -13.028 24.920 1.701 28.171 Atomic orbital electron populations 1.20747 0.89568 1.03521 1.03017 1.19389 0.96519 0.90101 0.97895 1.20814 0.93691 0.97884 1.04058 1.20704 0.94818 0.97091 1.02275 1.21678 0.98476 0.83138 1.05264 1.41252 1.07193 1.05349 1.46109 1.22155 0.99532 0.80596 1.12043 1.19691 0.93329 0.92785 1.11499 1.17415 0.83671 0.85723 0.76178 1.90770 1.33375 1.67512 1.50388 1.45940 1.07865 1.08241 1.75114 1.21587 0.98060 0.78200 1.02043 1.21310 0.92783 0.98059 0.98720 1.22075 0.99259 0.98401 0.96888 1.20886 0.92311 0.86535 0.98374 1.44044 1.58410 1.00703 1.28348 1.19161 1.27436 1.01300 0.90211 0.91813 1.25042 0.98598 1.00344 0.95732 1.70029 1.47069 1.26409 1.11265 0.86318 0.78387 0.81755 0.80441 1.21448 1.21552 1.20494 1.20760 0.86043 1.00302 0.88304 1.22178 1.01648 0.92976 1.00472 1.21072 0.98781 0.88763 1.07090 1.18641 0.81791 0.94965 1.12454 0.90400 0.90857 0.90713 0.84941 0.83676 0.82032 0.80575 0.76772 0.91517 0.91693 0.91350 0.92117 0.93562 0.96692 0.92937 0.93655 0.96480 0.89422 0.93029 0.92359 0.82809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.65 9.91 36.01 0.36 -0.29 16 2 C -0.04 -0.31 5.91 -104.32 -0.62 -0.93 16 3 C -0.14 -0.95 9.72 -39.50 -0.38 -1.34 16 4 C -0.13 -0.76 9.97 -39.91 -0.40 -1.16 16 5 C 0.03 0.22 10.89 -16.35 -0.18 0.05 16 6 N -0.34 -3.23 2.92 -60.42 -0.18 -3.40 16 7 C -0.01 -0.09 11.09 -16.17 -0.18 -0.27 16 8 C -0.17 -2.05 6.12 -105.07 -0.64 -2.70 16 9 C 0.58 8.53 7.82 -12.49 -0.10 8.43 16 10 O -0.54 -9.92 16.92 5.28 0.09 -9.83 16 11 N -0.72 -9.28 5.26 -61.36 -0.32 -9.60 16 12 C 0.12 1.81 5.06 -4.05 -0.02 1.79 16 13 C -0.09 -1.41 2.19 -90.58 -0.20 -1.61 16 14 C -0.13 -2.07 5.25 -26.61 -0.14 -2.21 16 15 C 0.15 2.94 6.52 -3.71 -0.02 2.91 16 16 N -0.59 -14.62 2.99 -172.32 -0.52 -15.13 16 17 C -0.25 -6.87 9.58 -15.06 -0.14 -7.01 16 18 H 0.06 1.72 7.88 -52.49 -0.41 1.30 16 19 C 0.00 0.03 4.92 -17.43 -0.09 -0.05 16 20 N -0.90 -26.12 11.19 55.49 0.62 -25.50 16 21 Si 0.90 21.69 29.59 -169.99 -5.03 16.66 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 25 C 0.17 4.02 5.30 -3.71 -0.02 4.00 16 26 C -0.13 -2.47 5.36 -26.61 -0.14 -2.61 16 27 C -0.13 -1.58 10.27 -38.54 -0.40 -1.98 16 28 C 0.03 0.27 6.60 -84.00 -0.55 -0.28 16 29 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.31 8.08 -51.93 -0.42 -0.11 16 31 H 0.07 0.46 7.69 -51.93 -0.40 0.06 16 32 H 0.13 0.57 8.06 -52.49 -0.42 0.14 16 33 H 0.15 0.43 8.06 -52.49 -0.42 0.01 16 34 H 0.16 0.64 8.06 -52.48 -0.42 0.21 16 35 H 0.18 1.19 7.42 -52.49 -0.39 0.80 16 36 H 0.40 4.14 6.54 -40.82 -0.27 3.88 16 37 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.05 0.62 7.15 -51.93 -0.37 0.25 16 42 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 43 H 0.05 1.05 7.93 -51.93 -0.41 0.64 16 44 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 45 H 0.02 0.42 8.14 -51.92 -0.42 0.00 16 46 H 0.09 2.32 6.07 -51.93 -0.31 2.00 16 47 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 48 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 49 H 0.15 1.74 7.93 -52.49 -0.42 1.32 16 LS Contribution 395.11 15.07 5.95 5.95 Total: -1.00 -33.88 395.11 -10.86 -44.74 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -7.61 Total: 1.39 kcal Atomic # 6 Polarization: -1.41 SS G_CDS: -3.86 Total: -5.27 kcal Atomic # 7 Polarization: -53.24 SS G_CDS: -0.39 Total: -53.64 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: 0.09 Total: -9.83 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.03 Total: 16.66 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.88 -10.86 -44.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933483676.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.293 kcal (2) G-P(sol) polarization free energy of solvation -33.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds