Wall clock time and date at job start Wed Apr 1 2020 00:11:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.35738 * 120.33637 * 2 1 4 4 C 1.40825 * 119.72280 * 180.02562 * 3 2 1 5 5 C 1.34538 * 120.58214 * 359.97438 * 4 3 2 6 6 N 1.37440 * 120.74252 * 0.03228 * 5 4 3 7 7 C 1.35133 * 131.28394 * 179.97438 * 6 5 4 8 8 C 1.38051 * 108.76978 * 179.97438 * 7 6 5 9 9 C 1.47498 * 126.37312 * 180.02562 * 8 7 6 10 10 O 1.21597 * 120.00174 * 180.02562 * 9 8 7 11 11 N 1.34779 * 120.00098 * 0.02936 * 9 8 7 12 12 C 1.46492 * 120.00075 * 180.02562 * 11 9 8 13 13 C 1.53001 * 109.46978 * 179.97438 * 12 11 9 14 14 C 1.53041 * 109.46230 * 295.02601 * 13 12 11 15 15 C 1.53190 * 109.31193 * 178.60198 * 14 13 12 16 16 N 1.46928 * 108.76803 * 54.65699 * 15 14 13 17 17 C 1.36936 * 120.63098 * 126.40756 * 16 15 14 18 18 H 1.07994 * 119.99741 * 331.81995 * 17 16 15 19 19 C 1.38809 * 119.99929 * 151.82693 * 17 16 15 20 20 N 1.31623 * 119.99954 * 343.06673 * 19 17 16 21 21 Si 1.86795 * 120.00102 * 163.07049 * 19 17 16 22 22 H 1.48504 * 109.47580 * 89.99588 * 21 19 17 23 23 H 1.48499 * 109.47387 * 209.99844 * 21 19 17 24 24 H 1.48502 * 109.47031 * 329.99660 * 21 19 17 25 25 C 1.46924 * 118.73689 * 306.38138 * 16 15 14 26 26 C 1.53039 * 109.46079 * 174.97030 * 13 12 11 27 27 C 1.41200 * 107.25843 * 0.26830 * 8 7 6 28 28 C 1.37944 * 119.81182 * 359.96803 * 6 5 4 29 29 H 1.08998 * 109.46961 * 269.97650 * 1 2 3 30 30 H 1.08992 * 109.46998 * 29.97582 * 1 2 3 31 31 H 1.08997 * 109.46833 * 149.97958 * 1 2 3 32 32 H 1.07998 * 120.13869 * 0.02562 * 3 2 1 33 33 H 1.07996 * 119.71132 * 179.97438 * 4 3 2 34 34 H 1.08003 * 119.62852 * 180.02562 * 5 4 3 35 35 H 1.08002 * 125.61395 * 0.02562 * 7 6 5 36 36 H 0.97006 * 119.99571 * 359.97438 * 11 9 8 37 37 H 1.08998 * 109.47574 * 59.99866 * 12 11 9 38 38 H 1.09005 * 109.47188 * 299.99261 * 12 11 9 39 39 H 1.09007 * 109.45957 * 54.99749 * 13 12 11 40 40 H 1.09005 * 109.49545 * 298.56737 * 14 13 12 41 41 H 1.08999 * 109.49919 * 58.65857 * 14 13 12 42 42 H 1.09000 * 109.59793 * 294.86031 * 15 14 13 43 43 H 1.08999 * 109.70159 * 174.50656 * 15 14 13 44 44 H 0.97000 * 119.99986 * 180.02562 * 20 19 17 45 45 H 1.09008 * 109.58790 * 293.82267 * 25 16 15 46 46 H 1.08997 * 109.70498 * 173.46900 * 25 16 15 47 47 H 1.08998 * 109.49955 * 301.33874 * 26 13 12 48 48 H 1.09001 * 109.50098 * 61.40551 * 26 13 12 49 49 H 1.07998 * 126.57230 * 179.69578 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1926 1.1715 0.0000 4 6 3.6008 1.1564 -0.0005 5 6 4.2728 -0.0091 -0.0006 6 7 3.6005 -1.2078 -0.0007 7 6 4.0499 -2.4822 -0.0012 8 6 2.9650 -3.3358 -0.0005 9 6 3.0119 -4.8100 -0.0002 10 8 1.9788 -5.4513 -0.0001 11 7 4.2000 -5.4465 0.0000 12 6 4.2466 -6.9106 -0.0003 13 6 5.7046 -7.3745 -0.0006 14 6 6.3754 -6.9471 -1.3081 15 6 7.8440 -7.3825 -1.2900 16 7 7.9058 -8.8262 -1.0242 17 6 8.5935 -9.6613 -1.8637 18 1 8.7035 -9.4068 -2.9074 19 6 9.1488 -10.8351 -1.3732 20 7 9.3131 -10.9940 -0.0770 21 14 9.6632 -12.1892 -2.5527 22 1 11.0768 -11.9823 -2.9579 23 1 9.5283 -13.5073 -1.8822 24 1 8.7933 -12.1545 -3.7558 25 6 7.2164 -9.3566 0.1598 26 6 5.7548 -8.8988 0.1257 27 6 1.8020 -2.5352 -0.0059 28 6 2.2211 -1.2203 -0.0002 29 1 -0.3633 -0.0004 1.0277 30 1 -0.3633 0.8901 -0.5134 31 1 -0.3633 -0.8898 -0.5141 32 1 1.6604 2.1113 0.0004 33 1 4.1461 2.0886 -0.0010 34 1 5.3529 -0.0026 -0.0006 35 1 5.0871 -2.7832 -0.0012 36 1 5.0242 -4.9349 -0.0004 37 1 3.7449 -7.2901 -0.8904 38 1 3.7445 -7.2903 0.8896 39 1 6.2296 -6.9229 0.8413 40 1 5.8664 -7.4182 -2.1490 41 1 6.3186 -5.8633 -1.4089 42 1 8.3755 -6.8433 -0.5058 43 1 8.3026 -7.1687 -2.2554 44 1 9.7016 -11.8140 0.2658 45 1 7.6967 -8.9785 1.0624 46 1 7.2584 -10.4458 0.1525 47 1 5.2563 -9.2043 1.0456 48 1 5.2513 -9.3514 -0.7286 49 1 0.7801 -2.8847 -0.0115 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000933483676.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:11:26 Heat of formation + Delta-G solvation = 26.633835 kcal Electronic energy + Delta-G solvation = -28607.667587 eV Core-core repulsion = 24727.743267 eV Total energy + Delta-G solvation = -3879.924320 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -43.22177 -40.66158 -39.29101 -37.56466 -36.39007 -35.02376 -34.48239 -32.61833 -31.54804 -31.21552 -29.62278 -28.32432 -27.77377 -26.00372 -24.47494 -23.72939 -22.97584 -22.63838 -22.27387 -21.05768 -20.50173 -18.85677 -18.60877 -17.93019 -17.12045 -16.79773 -16.66613 -16.60098 -16.14379 -16.07754 -15.65676 -15.29158 -15.11102 -14.96106 -14.80154 -14.67691 -14.27387 -14.12496 -13.99613 -13.83369 -13.66557 -13.41632 -13.14108 -12.98739 -12.81128 -12.57060 -12.54834 -12.34215 -12.25974 -12.04461 -12.01303 -11.82995 -11.61105 -11.31480 -11.10142 -11.09851 -11.00979 -10.52068 -10.13378 -9.53072 -8.65081 -8.30772 -7.86389 -5.30901 -0.19467 0.37516 1.08197 1.45742 1.48089 1.57307 1.69924 2.24691 2.48250 2.51948 2.55915 3.28205 3.51522 3.72789 3.75099 3.81850 3.89908 3.97098 4.02047 4.08858 4.11540 4.19019 4.41154 4.48975 4.53807 4.55938 4.71133 4.73780 4.76525 4.78871 4.82960 4.86141 4.95025 4.95432 5.03937 5.14370 5.15930 5.25321 5.30313 5.31092 5.34464 5.40557 5.47272 5.47973 5.57148 5.66637 5.67386 5.80724 5.88966 6.30328 6.41259 6.59987 7.17067 7.25604 7.89722 8.40244 9.19726 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.025680 B = 0.001892 C = 0.001812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.084689 B =14797.150992 C =15451.120160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.068 4.068 3 C -0.133 4.133 4 C -0.126 4.126 5 C 0.018 3.982 6 N -0.340 5.340 7 C 0.000 4.000 8 C -0.194 4.194 9 C 0.584 3.416 10 O -0.590 6.590 11 N -0.708 5.708 12 C 0.137 3.863 13 C -0.076 4.076 14 C -0.114 4.114 15 C 0.140 3.860 16 N -0.612 5.612 17 C -0.261 4.261 18 H 0.064 0.936 19 C -0.052 4.052 20 N -0.934 5.934 21 Si 0.964 3.036 22 H -0.284 1.284 23 H -0.293 1.293 24 H -0.273 1.273 25 C 0.178 3.822 26 C -0.123 4.123 27 C -0.167 4.167 28 C 0.021 3.979 29 H 0.081 0.919 30 H 0.092 0.908 31 H 0.062 0.938 32 H 0.159 0.841 33 H 0.181 0.819 34 H 0.194 0.806 35 H 0.209 0.791 36 H 0.413 0.587 37 H 0.055 0.945 38 H 0.062 0.938 39 H 0.079 0.921 40 H 0.048 0.952 41 H 0.085 0.915 42 H 0.020 0.980 43 H 0.051 0.949 44 H 0.249 0.751 45 H 0.000 1.000 46 H 0.050 0.950 47 H 0.068 0.932 48 H 0.049 0.951 49 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.085 29.327 1.666 32.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.069 4.069 3 C -0.153 4.153 4 C -0.146 4.146 5 C -0.099 4.099 6 N -0.002 5.002 7 C -0.134 4.134 8 C -0.202 4.202 9 C 0.373 3.627 10 O -0.471 6.471 11 N -0.359 5.359 12 C 0.013 3.987 13 C -0.095 4.095 14 C -0.153 4.153 15 C 0.015 3.985 16 N -0.336 5.336 17 C -0.391 4.391 18 H 0.082 0.918 19 C -0.248 4.248 20 N -0.580 5.580 21 Si 0.792 3.208 22 H -0.211 1.211 23 H -0.219 1.219 24 H -0.198 1.198 25 C 0.052 3.948 26 C -0.163 4.163 27 C -0.191 4.191 28 C -0.085 4.085 29 H 0.100 0.900 30 H 0.111 0.889 31 H 0.081 0.919 32 H 0.177 0.823 33 H 0.198 0.802 34 H 0.211 0.789 35 H 0.226 0.774 36 H 0.250 0.750 37 H 0.074 0.926 38 H 0.080 0.920 39 H 0.098 0.902 40 H 0.067 0.933 41 H 0.104 0.896 42 H 0.038 0.962 43 H 0.070 0.930 44 H 0.058 0.942 45 H 0.018 0.982 46 H 0.069 0.931 47 H 0.087 0.913 48 H 0.068 0.932 49 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -13.505 28.895 1.729 31.942 hybrid contribution 0.851 -1.282 -0.358 1.580 sum -12.653 27.612 1.371 30.405 Atomic orbital electron populations 1.20766 0.88573 1.03914 1.03391 1.19689 0.97574 0.89931 0.99663 1.21281 0.94456 0.98277 1.01335 1.21232 0.94711 0.98238 1.00397 1.22380 1.00139 0.82309 1.05077 1.41485 1.07004 1.06177 1.45542 1.22485 1.00082 0.80366 1.10474 1.19537 0.94697 0.91656 1.14285 1.17744 0.83215 0.86656 0.75094 1.90737 1.34981 1.68663 1.52746 1.45736 1.08202 1.07476 1.74477 1.21295 0.96694 0.79250 1.01484 1.21139 0.93640 0.95836 0.98921 1.21935 0.96138 1.00666 0.96599 1.21075 0.94976 0.84071 0.98371 1.44330 1.58523 1.02563 1.28182 1.19481 1.26882 1.02008 0.90735 0.91822 1.25772 0.99402 1.02435 0.97140 1.70174 1.48395 1.26635 1.12843 0.85332 0.78050 0.78789 0.78611 1.21051 1.21941 1.19776 1.20560 0.88747 0.98109 0.87396 1.21987 0.98046 0.95194 1.01036 1.21086 0.98538 0.89976 1.09502 1.18882 0.82737 0.95103 1.11733 0.90033 0.88913 0.91864 0.82294 0.80185 0.78883 0.77425 0.75010 0.92625 0.91950 0.90244 0.93277 0.89626 0.96181 0.93021 0.94166 0.98221 0.93117 0.91305 0.93228 0.83991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.20 9.91 71.24 0.71 -0.49 16 2 C -0.07 -1.01 5.91 -19.67 -0.12 -1.13 16 3 C -0.13 -1.32 9.72 22.32 0.22 -1.10 16 4 C -0.13 -0.96 9.97 22.06 0.22 -0.74 16 5 C 0.02 0.18 10.89 82.97 0.90 1.08 16 6 N -0.34 -5.77 2.92 -345.06 -1.01 -6.77 16 7 C 0.00 0.00 11.09 84.14 0.93 0.93 16 8 C -0.19 -4.79 6.12 -20.15 -0.12 -4.92 16 9 C 0.58 17.07 7.82 86.68 0.68 17.75 16 10 O -0.59 -22.32 16.92 -4.02 -0.07 -22.39 16 11 N -0.71 -17.08 5.26 -466.31 -2.45 -19.53 16 12 C 0.14 3.81 5.06 86.38 0.44 4.24 16 13 C -0.08 -2.28 2.19 -10.77 -0.02 -2.30 16 14 C -0.11 -3.49 5.25 30.67 0.16 -3.33 16 15 C 0.14 5.49 6.52 86.36 0.56 6.06 16 16 N -0.61 -30.41 2.99 -699.10 -2.09 -32.50 16 17 C -0.26 -14.38 9.58 84.03 0.81 -13.58 16 18 H 0.06 3.43 7.88 -2.91 -0.02 3.41 16 19 C -0.05 -2.94 4.92 84.86 0.42 -2.52 16 20 N -0.93 -55.48 11.19 21.65 0.24 -55.23 16 21 Si 0.96 45.26 29.59 68.60 2.03 47.29 16 22 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 23 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 24 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 25 C 0.18 8.49 5.30 86.36 0.46 8.94 16 26 C -0.12 -4.53 5.36 30.67 0.16 -4.36 16 27 C -0.17 -4.16 10.27 22.94 0.24 -3.92 16 28 C 0.02 0.42 6.60 38.90 0.26 0.68 16 29 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.09 0.60 8.08 -2.39 -0.02 0.58 16 31 H 0.06 0.82 7.69 -2.39 -0.02 0.80 16 32 H 0.16 0.68 8.06 -2.91 -0.02 0.66 16 33 H 0.18 0.08 8.06 -2.91 -0.02 0.06 16 34 H 0.19 0.59 8.06 -2.91 -0.02 0.57 16 35 H 0.21 2.03 7.42 -2.91 -0.02 2.00 16 36 H 0.41 7.35 6.54 -92.70 -0.61 6.74 16 37 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 39 H 0.08 2.26 8.14 -2.38 -0.02 2.24 16 40 H 0.05 1.64 8.14 -2.38 -0.02 1.62 16 41 H 0.09 1.97 7.15 -2.39 -0.02 1.95 16 42 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 43 H 0.05 2.00 7.93 -2.39 -0.02 1.98 16 44 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 45 H 0.00 -0.01 8.14 -2.38 -0.02 -0.03 16 46 H 0.05 2.78 6.07 -2.39 -0.01 2.77 16 47 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 48 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 49 H 0.14 3.62 7.93 -2.91 -0.02 3.59 16 Total: -1.00 -77.16 395.11 3.89 -73.27 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: 0.34 Total: 14.57 kcal Atomic # 6 Polarization: -5.60 SS G_CDS: 6.89 Total: 1.29 kcal Atomic # 7 Polarization: -108.73 SS G_CDS: -5.31 Total: -114.04 kcal Atomic # 8 Polarization: -22.32 SS G_CDS: -0.07 Total: -22.39 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -77.16 3.89 -73.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933483676.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.903 kcal (2) G-P(sol) polarization free energy of solvation -77.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds