Wall clock time and date at job start Wed Apr 1 2020 00:36:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34241 * 126.50214 * 2 1 4 4 N 1.36827 * 109.93345 * 179.75268 * 3 2 1 5 5 C 1.46506 * 125.06872 * 180.31176 * 4 3 2 6 6 C 1.50691 * 109.47231 * 265.07651 * 5 4 3 7 7 O 1.21282 * 120.00275 * 359.97438 * 6 5 4 8 8 N 1.34775 * 119.99950 * 179.97438 * 6 5 4 9 9 C 1.47019 * 125.65283 * 179.71166 * 8 6 5 10 10 C 1.54334 * 107.26918 * 178.85019 * 9 8 6 11 11 H 1.08995 * 110.66982 * 96.52575 * 10 9 8 12 12 C 1.52999 * 110.84842 * 219.67638 * 10 9 8 13 13 C 1.55159 * 103.02133 * 338.14116 * 10 9 8 14 14 H 1.09003 * 111.00263 * 277.23716 * 13 10 9 15 15 N 1.46488 * 111.00437 * 153.38134 * 13 10 9 16 16 C 1.36937 * 120.00375 * 161.35308 * 15 13 10 17 17 H 1.08011 * 119.99807 * 359.97438 * 16 15 13 18 18 C 1.38808 * 120.00401 * 179.97438 * 16 15 13 19 19 N 1.31614 * 119.99956 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 119.99941 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47224 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.47064 * 120.00226 * 20 18 16 23 23 H 1.48498 * 109.47242 * 239.99847 * 20 18 16 24 24 C 1.47427 * 125.64662 * 0.02562 * 8 6 5 25 25 C 1.37693 * 109.87379 * 0.38015 * 4 3 2 26 26 C 1.39125 * 133.51006 * 179.97438 * 25 4 3 27 27 C 1.37745 * 119.77716 * 179.67887 * 26 25 4 28 28 C 1.38827 * 120.67117 * 359.97438 * 27 26 25 29 29 C 1.36623 * 120.52722 * 0.02562 * 28 27 26 30 30 C 1.39637 * 119.76450 * 359.97438 * 29 28 27 31 31 H 1.08995 * 109.47110 * 270.02746 * 1 2 3 32 32 H 1.08997 * 109.46916 * 30.02857 * 1 2 3 33 33 H 1.08998 * 109.46775 * 150.02238 * 1 2 3 34 34 H 1.08007 * 125.03456 * 359.97438 * 3 2 1 35 35 H 1.09006 * 109.46391 * 25.07392 * 5 4 3 36 36 H 1.08997 * 109.46836 * 145.06810 * 5 4 3 37 37 H 1.09003 * 109.88499 * 298.39929 * 9 8 6 38 38 H 1.09009 * 109.87809 * 59.55957 * 9 8 6 39 39 H 1.09007 * 109.47221 * 173.69429 * 12 10 9 40 40 H 1.08994 * 109.47484 * 293.68811 * 12 10 9 41 41 H 1.09002 * 109.47709 * 53.69362 * 12 10 9 42 42 H 0.97002 * 120.00407 * 341.35179 * 15 13 10 43 43 H 0.97005 * 119.99631 * 180.02562 * 19 18 16 44 44 H 1.09002 * 110.37023 * 322.93222 * 24 8 6 45 45 H 1.09000 * 110.36967 * 85.14673 * 24 8 6 46 46 H 1.07998 * 120.10608 * 359.69378 * 26 25 4 47 47 H 1.08009 * 119.66169 * 179.97438 * 27 26 25 48 48 H 1.07997 * 119.73931 * 179.97438 * 28 27 26 49 49 H 1.08002 * 120.12080 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3055 1.0791 0.0000 4 7 3.6170 0.6889 0.0056 5 6 4.7657 1.5982 0.0137 6 6 5.2423 1.8181 -1.3988 7 8 4.6784 1.2690 -2.3215 8 7 6.2953 2.6249 -1.6367 9 6 6.8660 2.9217 -2.9588 10 6 8.0320 3.9095 -2.7432 11 1 8.9832 3.3789 -2.7018 12 6 8.0551 4.9729 -3.8429 13 6 7.6995 4.5483 -1.3689 14 1 6.9821 5.3615 -1.4793 15 7 8.9160 5.0116 -0.6970 16 6 8.8314 5.9259 0.3189 17 1 7.8676 6.3058 0.6245 18 6 9.9841 6.3645 0.9558 19 7 11.1585 5.9019 0.5830 20 14 9.8685 7.6123 2.3412 21 1 8.4454 7.9716 2.5663 22 1 10.4331 7.0264 3.5835 23 1 10.6352 8.8303 1.9755 24 6 7.0697 3.3511 -0.6138 25 6 3.6964 -0.6857 0.0008 26 6 4.7589 -1.5838 0.0026 27 6 4.5096 -2.9385 0.0030 28 6 3.2071 -3.4189 0.0021 29 6 2.1488 -2.5548 0.0003 30 6 2.3784 -1.1775 -0.0001 31 1 -0.3633 0.0005 1.0276 32 1 -0.3633 0.8897 -0.5143 33 1 -0.3633 -0.8902 -0.5135 34 1 1.9635 2.1035 -0.0004 35 1 4.4705 2.5524 0.4503 36 1 5.5704 1.1615 0.6051 37 1 7.2348 2.0043 -3.4178 38 1 6.1083 3.3786 -3.5955 39 1 8.8133 5.7206 -3.6096 40 1 8.2903 4.5031 -4.7979 41 1 7.0785 5.4530 -3.9049 42 1 9.7816 4.6707 -0.9717 43 1 11.9640 6.2082 1.0284 44 1 6.4115 3.7065 0.1790 45 1 7.8479 2.7094 -0.2006 46 1 5.7758 -1.2199 0.0040 47 1 5.3360 -3.6340 0.0040 48 1 3.0290 -4.4840 0.0020 49 1 1.1382 -2.9357 -0.0009 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000939281823.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:36:31 Heat of formation + Delta-G solvation = 40.859399 kcal Electronic energy + Delta-G solvation = -29276.015502 eV Core-core repulsion = 25396.708048 eV Total energy + Delta-G solvation = -3879.307453 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.50759 -39.85689 -37.79121 -36.92139 -34.20731 -33.84864 -32.66546 -30.88216 -30.48650 -29.90239 -28.64031 -27.64980 -26.55321 -24.94389 -24.06614 -22.74371 -21.85652 -21.39368 -20.04234 -19.66754 -19.25745 -17.35857 -17.22334 -16.84076 -16.64077 -15.99355 -15.50014 -15.37845 -14.94901 -14.45328 -14.16088 -13.96908 -13.85255 -13.66250 -13.25270 -13.23353 -13.09800 -13.08393 -12.98680 -12.75070 -12.63025 -12.22046 -12.17174 -11.95365 -11.77266 -11.54825 -11.43674 -11.21520 -11.11295 -10.86647 -10.82200 -10.71044 -10.32578 -10.03728 -10.00267 -9.83054 -9.48956 -9.13566 -8.51795 -8.18015 -7.57601 -7.20286 -5.95568 -3.27089 1.11306 1.60794 2.43178 2.55685 2.70544 3.18150 3.31760 3.38051 3.40221 3.91078 4.36096 4.48435 4.53953 4.61684 4.70083 4.89001 4.90969 4.95968 5.00442 5.07867 5.11439 5.22214 5.28870 5.42684 5.49685 5.52458 5.60943 5.61270 5.67530 5.71309 5.72034 5.80537 5.83956 5.89891 5.90966 6.08513 6.11824 6.13598 6.20941 6.33740 6.36477 6.46336 6.50526 6.58433 6.72949 6.74191 6.78949 7.18319 7.22037 7.52851 7.58347 8.12872 8.21769 9.33976 9.86628 10.21414 11.26197 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.013672 B = 0.002494 C = 0.002386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2047.554188 B =11222.482604 C =11731.608337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.178 4.178 3 C 0.061 3.939 4 N -0.466 5.466 5 C 0.096 3.904 6 C 0.505 3.495 7 O -0.533 6.533 8 N -0.610 5.610 9 C 0.118 3.882 10 C -0.113 4.113 11 H 0.085 0.915 12 C -0.135 4.135 13 C 0.179 3.821 14 H 0.066 0.934 15 N -0.710 5.710 16 C -0.251 4.251 17 H 0.073 0.927 18 C -0.006 4.006 19 N -0.927 5.927 20 Si 0.907 3.093 21 H -0.279 1.279 22 H -0.290 1.290 23 H -0.290 1.290 24 C 0.067 3.933 25 C 0.112 3.888 26 C -0.124 4.124 27 C -0.102 4.102 28 C -0.150 4.150 29 C -0.073 4.073 30 C -0.102 4.102 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.165 0.835 35 H 0.121 0.879 36 H 0.115 0.885 37 H 0.062 0.938 38 H 0.066 0.934 39 H 0.069 0.931 40 H 0.050 0.950 41 H 0.052 0.948 42 H 0.388 0.612 43 H 0.257 0.743 44 H 0.069 0.931 45 H 0.073 0.927 46 H 0.115 0.885 47 H 0.122 0.878 48 H 0.119 0.881 49 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.749 -12.358 -2.242 20.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.185 4.185 3 C -0.063 4.063 4 N -0.148 5.148 5 C -0.030 4.030 6 C 0.291 3.709 7 O -0.410 6.410 8 N -0.345 5.345 9 C -0.005 4.005 10 C -0.133 4.133 11 H 0.103 0.897 12 C -0.192 4.192 13 C 0.066 3.934 14 H 0.084 0.916 15 N -0.350 5.350 16 C -0.381 4.381 17 H 0.091 0.909 18 C -0.203 4.203 19 N -0.574 5.574 20 Si 0.738 3.262 21 H -0.204 1.204 22 H -0.217 1.217 23 H -0.217 1.217 24 C -0.059 4.059 25 C 0.006 3.994 26 C -0.144 4.144 27 C -0.122 4.122 28 C -0.170 4.170 29 C -0.091 4.091 30 C -0.107 4.107 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.182 0.818 35 H 0.138 0.862 36 H 0.133 0.867 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.069 0.931 41 H 0.071 0.929 42 H 0.222 0.778 43 H 0.067 0.933 44 H 0.088 0.912 45 H 0.091 0.909 46 H 0.133 0.867 47 H 0.140 0.860 48 H 0.137 0.863 49 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -15.881 -12.296 -2.575 20.249 hybrid contribution 0.611 0.696 0.742 1.187 sum -15.270 -11.601 -1.833 19.264 Atomic orbital electron populations 1.20047 0.89525 1.02059 1.01374 1.20202 0.95083 0.90737 1.12447 1.21549 0.81543 0.99214 1.04033 1.43347 1.05019 1.03744 1.62666 1.21572 0.89599 0.95995 0.95799 1.20514 0.79956 0.79141 0.91290 1.90748 1.56194 1.48675 1.45397 1.48538 1.30183 1.45848 1.09895 1.21993 0.95393 0.98540 0.84550 1.22483 0.97663 0.96066 0.97058 0.89674 1.21669 1.02293 0.98387 0.96873 1.21336 0.90637 0.92507 0.88904 0.91614 1.42307 1.02558 1.49915 1.40216 1.19252 0.93110 1.16521 1.09256 0.90938 1.24772 0.95262 1.00321 0.99981 1.69663 0.97134 1.46722 1.43926 0.86130 0.77368 0.80909 0.81793 1.20446 1.21722 1.21707 1.23637 0.94982 0.95773 0.91509 1.18181 0.95495 0.82566 1.03124 1.20034 0.96604 0.92331 1.05472 1.20758 0.96962 0.94026 1.00414 1.20569 0.92475 0.99277 1.04641 1.20195 0.98863 0.90847 0.99217 1.19057 0.91795 0.93195 1.06630 0.92085 0.92038 0.92003 0.81754 0.86153 0.86676 0.91915 0.91573 0.91242 0.93118 0.92873 0.77788 0.93290 0.91228 0.90858 0.86666 0.85958 0.86288 0.86371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.65 10.41 36.00 0.37 -0.28 16 2 C -0.18 -2.19 6.32 -102.71 -0.65 -2.84 16 3 C 0.06 0.75 11.19 -16.73 -0.19 0.56 16 4 N -0.47 -6.28 2.27 -115.71 -0.26 -6.54 16 5 C 0.10 1.16 5.49 -5.20 -0.03 1.13 16 6 C 0.50 7.64 7.92 -10.99 -0.09 7.56 16 7 O -0.53 -10.03 16.75 5.56 0.09 -9.94 16 8 N -0.61 -8.94 3.33 -170.51 -0.57 -9.51 16 9 C 0.12 1.69 6.48 -3.06 -0.02 1.67 16 10 C -0.11 -1.66 3.16 -88.78 -0.28 -1.94 16 11 H 0.08 1.29 7.99 -51.93 -0.42 0.88 16 12 C -0.13 -1.81 9.16 37.16 0.34 -1.47 16 13 C 0.18 3.07 3.14 -65.78 -0.21 2.87 16 14 H 0.07 1.17 8.04 -51.93 -0.42 0.75 16 15 N -0.71 -15.66 5.28 -51.35 -0.27 -15.93 16 16 C -0.25 -6.25 9.98 -15.06 -0.15 -6.41 16 17 H 0.07 1.76 7.83 -52.48 -0.41 1.35 16 18 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 19 N -0.93 -26.07 13.06 55.49 0.72 -25.35 16 20 Si 0.91 20.89 29.55 -169.99 -5.02 15.86 16 21 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 24 C 0.07 1.02 6.38 -2.52 -0.02 1.00 16 25 C 0.11 1.62 6.80 -83.99 -0.57 1.05 16 26 C -0.12 -1.65 10.00 -39.43 -0.39 -2.04 16 27 C -0.10 -1.18 10.01 -39.54 -0.40 -1.58 16 28 C -0.15 -1.65 9.97 -39.95 -0.40 -2.05 16 29 C -0.07 -0.86 10.05 -39.64 -0.40 -1.26 16 30 C -0.10 -1.41 6.35 -105.13 -0.67 -2.07 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.17 1.54 8.06 -52.48 -0.42 1.12 16 35 H 0.12 1.17 7.82 -51.93 -0.41 0.76 16 36 H 0.12 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.07 0.94 7.77 -51.92 -0.40 0.53 16 39 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 40 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.05 0.68 8.07 -51.93 -0.42 0.26 16 42 H 0.39 9.22 7.71 -40.82 -0.31 8.90 16 43 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 44 H 0.07 0.98 7.48 -51.93 -0.39 0.59 16 45 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 46 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 47 H 0.12 1.12 8.06 -52.48 -0.42 0.69 16 48 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 49 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 LS Contribution 406.31 15.07 6.12 6.12 Total: -1.00 -31.54 406.31 -10.82 -42.36 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: -7.81 Total: 9.29 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: -3.83 Total: -6.37 kcal Atomic # 7 Polarization: -56.95 SS G_CDS: -0.38 Total: -57.32 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: 0.09 Total: -9.94 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -31.54 -10.82 -42.36 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939281823.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.218 kcal (2) G-P(sol) polarization free energy of solvation -31.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds