Wall clock time and date at job start Wed Apr 1 2020 00:36:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34241 * 126.50214 * 2 1 4 4 N 1.36827 * 109.93345 * 179.75268 * 3 2 1 5 5 C 1.46506 * 125.06872 * 180.31176 * 4 3 2 6 6 C 1.50691 * 109.47231 * 265.07651 * 5 4 3 7 7 O 1.21282 * 120.00275 * 359.97438 * 6 5 4 8 8 N 1.34775 * 119.99950 * 179.97438 * 6 5 4 9 9 C 1.47019 * 125.65283 * 179.71166 * 8 6 5 10 10 C 1.54334 * 107.26918 * 178.85019 * 9 8 6 11 11 H 1.08995 * 110.66982 * 96.52575 * 10 9 8 12 12 C 1.52999 * 110.84842 * 219.67638 * 10 9 8 13 13 C 1.55159 * 103.02133 * 338.14116 * 10 9 8 14 14 H 1.09003 * 111.00263 * 277.23716 * 13 10 9 15 15 N 1.46488 * 111.00437 * 153.38134 * 13 10 9 16 16 C 1.36937 * 120.00375 * 161.35308 * 15 13 10 17 17 H 1.08011 * 119.99807 * 359.97438 * 16 15 13 18 18 C 1.38808 * 120.00401 * 179.97438 * 16 15 13 19 19 N 1.31614 * 119.99956 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 119.99941 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47224 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.47064 * 120.00226 * 20 18 16 23 23 H 1.48498 * 109.47242 * 239.99847 * 20 18 16 24 24 C 1.47427 * 125.64662 * 0.02562 * 8 6 5 25 25 C 1.37693 * 109.87379 * 0.38015 * 4 3 2 26 26 C 1.39125 * 133.51006 * 179.97438 * 25 4 3 27 27 C 1.37745 * 119.77716 * 179.67887 * 26 25 4 28 28 C 1.38827 * 120.67117 * 359.97438 * 27 26 25 29 29 C 1.36623 * 120.52722 * 0.02562 * 28 27 26 30 30 C 1.39637 * 119.76450 * 359.97438 * 29 28 27 31 31 H 1.08995 * 109.47110 * 270.02746 * 1 2 3 32 32 H 1.08997 * 109.46916 * 30.02857 * 1 2 3 33 33 H 1.08998 * 109.46775 * 150.02238 * 1 2 3 34 34 H 1.08007 * 125.03456 * 359.97438 * 3 2 1 35 35 H 1.09006 * 109.46391 * 25.07392 * 5 4 3 36 36 H 1.08997 * 109.46836 * 145.06810 * 5 4 3 37 37 H 1.09003 * 109.88499 * 298.39929 * 9 8 6 38 38 H 1.09009 * 109.87809 * 59.55957 * 9 8 6 39 39 H 1.09007 * 109.47221 * 173.69429 * 12 10 9 40 40 H 1.08994 * 109.47484 * 293.68811 * 12 10 9 41 41 H 1.09002 * 109.47709 * 53.69362 * 12 10 9 42 42 H 0.97002 * 120.00407 * 341.35179 * 15 13 10 43 43 H 0.97005 * 119.99631 * 180.02562 * 19 18 16 44 44 H 1.09002 * 110.37023 * 322.93222 * 24 8 6 45 45 H 1.09000 * 110.36967 * 85.14673 * 24 8 6 46 46 H 1.07998 * 120.10608 * 359.69378 * 26 25 4 47 47 H 1.08009 * 119.66169 * 179.97438 * 27 26 25 48 48 H 1.07997 * 119.73931 * 179.97438 * 28 27 26 49 49 H 1.08002 * 120.12080 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3055 1.0791 0.0000 4 7 3.6170 0.6889 0.0056 5 6 4.7657 1.5982 0.0137 6 6 5.2423 1.8181 -1.3988 7 8 4.6784 1.2690 -2.3215 8 7 6.2953 2.6249 -1.6367 9 6 6.8660 2.9217 -2.9588 10 6 8.0320 3.9095 -2.7432 11 1 8.9832 3.3789 -2.7018 12 6 8.0551 4.9729 -3.8429 13 6 7.6995 4.5483 -1.3689 14 1 6.9821 5.3615 -1.4793 15 7 8.9160 5.0116 -0.6970 16 6 8.8314 5.9259 0.3189 17 1 7.8676 6.3058 0.6245 18 6 9.9841 6.3645 0.9558 19 7 11.1585 5.9019 0.5830 20 14 9.8685 7.6123 2.3412 21 1 8.4454 7.9716 2.5663 22 1 10.4331 7.0264 3.5835 23 1 10.6352 8.8303 1.9755 24 6 7.0697 3.3511 -0.6138 25 6 3.6964 -0.6857 0.0008 26 6 4.7589 -1.5838 0.0026 27 6 4.5096 -2.9385 0.0030 28 6 3.2071 -3.4189 0.0021 29 6 2.1488 -2.5548 0.0003 30 6 2.3784 -1.1775 -0.0001 31 1 -0.3633 0.0005 1.0276 32 1 -0.3633 0.8897 -0.5143 33 1 -0.3633 -0.8902 -0.5135 34 1 1.9635 2.1035 -0.0004 35 1 4.4705 2.5524 0.4503 36 1 5.5704 1.1615 0.6051 37 1 7.2348 2.0043 -3.4178 38 1 6.1083 3.3786 -3.5955 39 1 8.8133 5.7206 -3.6096 40 1 8.2903 4.5031 -4.7979 41 1 7.0785 5.4530 -3.9049 42 1 9.7816 4.6707 -0.9717 43 1 11.9640 6.2082 1.0284 44 1 6.4115 3.7065 0.1790 45 1 7.8479 2.7094 -0.2006 46 1 5.7758 -1.2199 0.0040 47 1 5.3360 -3.6340 0.0040 48 1 3.0290 -4.4840 0.0020 49 1 1.1382 -2.9357 -0.0009 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000939281823.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:36:30 Heat of formation + Delta-G solvation = 24.876984 kcal Electronic energy + Delta-G solvation = -29276.708551 eV Core-core repulsion = 25396.708048 eV Total energy + Delta-G solvation = -3880.000503 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.43462 -41.07406 -39.06305 -37.85407 -35.89168 -34.78032 -33.99311 -32.54962 -31.43835 -30.74184 -29.57013 -29.14679 -27.58496 -26.03774 -25.69283 -23.67462 -23.11853 -22.43040 -21.36635 -20.64524 -20.33412 -19.11030 -18.42589 -17.93648 -17.55468 -17.22532 -16.67743 -16.34283 -16.30891 -15.82703 -15.39209 -15.17923 -14.90958 -14.78051 -14.56770 -14.53607 -14.31403 -14.14899 -13.97468 -13.67496 -13.55477 -13.30798 -13.10489 -13.05054 -12.94683 -12.90075 -12.87449 -12.48598 -12.24118 -12.22903 -12.12672 -12.00734 -11.72358 -11.69395 -11.41370 -11.18214 -10.94691 -10.41401 -9.79105 -9.11020 -9.04860 -8.47228 -7.94327 -5.23937 0.20541 0.68331 1.37421 1.45733 1.50193 1.52167 1.60271 1.81033 2.08061 2.56937 2.98615 3.25071 3.37834 3.64380 3.67562 3.74434 3.76940 3.87622 3.91148 4.03100 4.09908 4.14142 4.26473 4.34116 4.43558 4.44370 4.47205 4.54368 4.63312 4.64996 4.83618 4.85135 4.85665 4.87639 4.96989 5.00802 5.04455 5.10116 5.13561 5.20787 5.30785 5.31198 5.43303 5.56457 5.58556 5.69739 5.86290 5.90339 6.26299 6.27425 6.30443 6.40383 6.93838 7.34867 8.05769 8.29486 9.28657 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.013672 B = 0.002494 C = 0.002386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2047.554188 B =11222.482604 C =11731.608337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.189 4.189 3 C 0.045 3.955 4 N -0.473 5.473 5 C 0.099 3.901 6 C 0.507 3.493 7 O -0.572 6.572 8 N -0.607 5.607 9 C 0.120 3.880 10 C -0.103 4.103 11 H 0.078 0.922 12 C -0.130 4.130 13 C 0.172 3.828 14 H 0.066 0.934 15 N -0.720 5.720 16 C -0.237 4.237 17 H 0.082 0.918 18 C -0.069 4.069 19 N -0.966 5.966 20 Si 0.966 3.034 21 H -0.263 1.263 22 H -0.297 1.297 23 H -0.299 1.299 24 C 0.080 3.920 25 C 0.083 3.917 26 C -0.148 4.148 27 C -0.105 4.105 28 C -0.153 4.153 29 C -0.081 4.081 30 C -0.129 4.129 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.189 0.811 35 H 0.148 0.852 36 H 0.126 0.874 37 H 0.064 0.936 38 H 0.071 0.929 39 H 0.049 0.951 40 H 0.070 0.930 41 H 0.061 0.939 42 H 0.376 0.624 43 H 0.250 0.750 44 H 0.086 0.914 45 H 0.065 0.935 46 H 0.114 0.886 47 H 0.145 0.855 48 H 0.148 0.852 49 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.800 -12.795 -1.945 22.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.195 4.195 3 C -0.078 4.078 4 N -0.156 5.156 5 C -0.026 4.026 6 C 0.295 3.705 7 O -0.451 6.451 8 N -0.341 5.341 9 C -0.002 4.002 10 C -0.123 4.123 11 H 0.097 0.903 12 C -0.187 4.187 13 C 0.062 3.938 14 H 0.084 0.916 15 N -0.359 5.359 16 C -0.369 4.369 17 H 0.100 0.900 18 C -0.262 4.262 19 N -0.617 5.617 20 Si 0.796 3.204 21 H -0.187 1.187 22 H -0.224 1.224 23 H -0.226 1.226 24 C -0.045 4.045 25 C -0.022 4.022 26 C -0.169 4.169 27 C -0.124 4.124 28 C -0.172 4.172 29 C -0.099 4.099 30 C -0.134 4.134 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.084 0.916 34 H 0.206 0.794 35 H 0.166 0.834 36 H 0.144 0.856 37 H 0.082 0.918 38 H 0.090 0.910 39 H 0.069 0.931 40 H 0.089 0.911 41 H 0.080 0.920 42 H 0.209 0.791 43 H 0.059 0.941 44 H 0.104 0.896 45 H 0.083 0.917 46 H 0.132 0.868 47 H 0.162 0.838 48 H 0.166 0.834 49 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -17.991 -12.738 -2.285 22.161 hybrid contribution 1.179 0.736 0.563 1.499 sum -16.812 -12.002 -1.722 20.728 Atomic orbital electron populations 1.20101 0.87449 1.02797 1.02332 1.20665 0.96615 0.90335 1.11923 1.22065 0.81228 1.00505 1.04033 1.43489 1.05617 1.03604 1.62908 1.21686 0.89909 0.97265 0.93784 1.21028 0.79209 0.78099 0.92170 1.90729 1.57358 1.50109 1.46940 1.48532 1.30038 1.45686 1.09803 1.21982 0.95198 0.98414 0.84652 1.22387 0.97556 0.96215 0.96093 0.90317 1.21626 1.02157 0.97614 0.97326 1.21491 0.89020 0.93177 0.90149 0.91645 1.42408 1.03626 1.49771 1.40107 1.19626 0.93116 1.15487 1.08644 0.90019 1.25473 0.95253 1.02748 1.02693 1.69804 0.97565 1.48730 1.45569 0.85191 0.77801 0.78453 0.78993 1.18731 1.22448 1.22642 1.23324 0.95067 0.94622 0.91503 1.18548 0.96263 0.83337 1.04098 1.20249 0.96557 0.93233 1.06816 1.21124 0.98205 0.93802 0.99301 1.20950 0.91979 1.00732 1.03516 1.20551 1.00289 0.90404 0.98662 1.19510 0.92075 0.94464 1.07338 0.90924 0.90919 0.91631 0.79357 0.83448 0.85588 0.91800 0.91027 0.93147 0.91064 0.92006 0.79089 0.94095 0.89559 0.91662 0.86754 0.83764 0.83437 0.84281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.13 10.41 71.24 0.74 -0.39 16 2 C -0.19 -4.45 6.32 -18.63 -0.12 -4.57 16 3 C 0.05 1.06 11.19 83.00 0.93 1.99 16 4 N -0.47 -12.40 2.27 -519.98 -1.18 -13.58 16 5 C 0.10 2.25 5.49 85.63 0.47 2.72 16 6 C 0.51 14.80 7.92 87.65 0.69 15.50 16 7 O -0.57 -21.27 16.75 -3.04 -0.05 -21.32 16 8 N -0.61 -16.95 3.33 -811.75 -2.70 -19.65 16 9 C 0.12 3.28 6.48 86.73 0.56 3.84 16 10 C -0.10 -2.92 3.16 -9.60 -0.03 -2.95 16 11 H 0.08 2.36 7.99 -2.39 -0.02 2.34 16 12 C -0.13 -3.32 9.16 71.98 0.66 -2.66 16 13 C 0.17 5.73 3.14 46.39 0.15 5.88 16 14 H 0.07 2.22 8.04 -2.39 -0.02 2.20 16 15 N -0.72 -31.54 5.28 -316.37 -1.67 -33.21 16 16 C -0.24 -11.66 9.98 84.03 0.84 -10.82 16 17 H 0.08 3.81 7.83 -2.91 -0.02 3.78 16 18 C -0.07 -3.64 5.50 84.86 0.47 -3.17 16 19 N -0.97 -55.27 13.06 21.65 0.28 -54.99 16 20 Si 0.97 42.91 29.55 68.60 2.03 44.93 16 21 H -0.26 -10.82 7.11 99.48 0.71 -10.12 16 22 H -0.30 -13.39 7.11 99.48 0.71 -12.69 16 23 H -0.30 -13.57 7.11 99.48 0.71 -12.87 16 24 C 0.08 2.32 6.38 86.86 0.55 2.87 16 25 C 0.08 2.38 6.80 39.03 0.27 2.65 16 26 C -0.15 -3.93 10.00 22.37 0.22 -3.71 16 27 C -0.11 -2.33 10.01 22.29 0.22 -2.11 16 28 C -0.15 -3.10 9.97 22.03 0.22 -2.88 16 29 C -0.08 -1.81 10.05 22.23 0.22 -1.58 16 30 C -0.13 -3.47 6.35 -20.20 -0.13 -3.60 16 31 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.19 3.17 8.06 -2.91 -0.02 3.15 16 35 H 0.15 2.49 7.82 -2.38 -0.02 2.47 16 36 H 0.13 2.57 8.14 -2.39 -0.02 2.55 16 37 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.07 1.91 7.77 -2.38 -0.02 1.89 16 39 H 0.05 1.49 8.14 -2.38 -0.02 1.47 16 40 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.06 1.47 8.07 -2.39 -0.02 1.45 16 42 H 0.38 18.13 7.71 -92.71 -0.71 17.42 16 43 H 0.25 14.03 8.31 -92.70 -0.77 13.26 16 44 H 0.09 2.22 7.48 -2.39 -0.02 2.20 16 45 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 46 H 0.11 2.88 8.06 -2.91 -0.02 2.85 16 47 H 0.14 2.40 8.06 -2.91 -0.02 2.38 16 48 H 0.15 2.05 8.06 -2.91 -0.02 2.03 16 49 H 0.14 2.37 8.06 -2.91 -0.02 2.35 16 Total: -1.00 -68.37 406.31 3.88 -64.50 By element: Atomic # 1 Polarization: 36.08 SS G_CDS: 0.23 Total: 36.30 kcal Atomic # 6 Polarization: -9.93 SS G_CDS: 6.94 Total: -2.99 kcal Atomic # 7 Polarization: -116.16 SS G_CDS: -5.27 Total: -121.43 kcal Atomic # 8 Polarization: -21.27 SS G_CDS: -0.05 Total: -21.32 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.93 kcal Total: -68.37 3.88 -64.50 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939281823.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.372 kcal (2) G-P(sol) polarization free energy of solvation -68.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds