Wall clock time and date at job start Wed Apr 1 2020 00:45:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.36861 * 125.01912 * 2 1 4 4 H 0.97005 * 125.00993 * 0.03422 * 3 2 1 5 5 C 1.37398 * 109.98172 * 180.28623 * 3 2 1 6 6 C 1.39371 * 133.24381 * 180.44592 * 5 3 2 7 7 C 1.36313 * 120.23790 * 179.61913 * 6 5 3 8 8 C 1.40209 * 120.66550 * 359.70600 * 7 6 5 9 9 C 1.47656 * 119.97257 * 180.02562 * 8 7 6 10 10 O 1.21579 * 120.00114 * 352.02245 * 9 8 7 11 11 N 1.34774 * 120.00125 * 172.01277 * 9 8 7 12 12 C 1.47020 * 125.64987 * 5.34993 * 11 9 8 13 13 C 1.54320 * 107.27334 * 181.02150 * 12 11 9 14 14 H 1.09000 * 110.71993 * 263.82487 * 13 12 11 15 15 N 1.46498 * 110.71871 * 140.73625 * 13 12 11 16 16 C 1.36929 * 120.00542 * 86.45338 * 15 13 12 17 17 H 1.08003 * 119.99837 * 359.97438 * 16 15 13 18 18 C 1.38809 * 120.00399 * 179.97438 * 16 15 13 19 19 N 1.31626 * 120.00246 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 119.99789 * 359.97438 * 18 16 15 21 21 H 1.48503 * 109.47050 * 90.00053 * 20 18 16 22 22 H 1.48510 * 109.47030 * 209.99876 * 20 18 16 23 23 H 1.48494 * 109.47498 * 329.99894 * 20 18 16 24 24 C 1.55151 * 102.94189 * 22.18969 * 13 12 11 25 25 H 1.09005 * 111.00330 * 82.57770 * 24 13 12 26 26 C 1.53001 * 111.00549 * 206.38636 * 24 13 12 27 27 C 1.47422 * 125.64785 * 185.04041 * 11 9 8 28 28 C 1.39153 * 120.05662 * 0.02562 * 8 7 6 29 29 C 1.39266 * 119.39144 * 359.97438 * 28 8 7 30 30 C 1.34195 * 125.02288 * 180.02562 * 2 1 3 31 31 C 1.50700 * 126.53861 * 359.95156 * 30 2 1 32 32 H 1.08996 * 109.47128 * 89.97551 * 1 2 3 33 33 H 1.09005 * 109.47055 * 209.97024 * 1 2 3 34 34 H 1.08993 * 109.47371 * 329.97058 * 1 2 3 35 35 H 1.08000 * 119.87991 * 359.32358 * 6 5 3 36 36 H 1.08003 * 119.66992 * 179.69277 * 7 6 5 37 37 H 1.09005 * 109.87924 * 300.44078 * 12 11 9 38 38 H 1.09002 * 109.88196 * 61.59651 * 12 11 9 39 39 H 0.97004 * 119.99803 * 266.45002 * 15 13 12 40 40 H 0.96996 * 119.99589 * 180.02562 * 19 18 16 41 41 H 1.09002 * 109.46958 * 60.00175 * 26 24 13 42 42 H 1.08997 * 109.47445 * 180.02562 * 26 24 13 43 43 H 1.09003 * 109.47132 * 299.99915 * 26 24 13 44 44 H 1.09003 * 110.36714 * 274.74669 * 27 11 9 45 45 H 1.09002 * 110.37206 * 37.06972 * 27 11 9 46 46 H 1.08001 * 120.29867 * 180.02562 * 28 8 7 47 47 H 1.09005 * 109.46583 * 90.02893 * 31 30 2 48 48 H 1.09001 * 109.47019 * 210.02379 * 31 30 2 49 49 H 1.08991 * 109.47698 * 330.02987 * 31 30 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2924 1.1208 0.0000 4 1 1.9611 2.0325 0.0005 5 6 3.6193 0.7644 -0.0065 6 6 4.8048 1.4971 -0.0013 7 6 6.0079 0.8562 -0.0026 8 6 6.0720 -0.5445 -0.0030 9 6 7.3835 -1.2229 -0.0038 10 8 8.4024 -0.5760 -0.1504 11 7 7.4511 -2.5591 0.1580 12 6 6.3014 -3.4723 0.2339 13 6 6.8596 -4.8952 0.4468 14 1 6.9374 -5.4250 -0.5026 15 7 6.0243 -5.6440 1.3890 16 6 4.9286 -6.3298 0.9373 17 1 4.6799 -6.3184 -0.1137 18 6 4.1375 -7.0398 1.8300 19 7 3.0845 -7.6994 1.3956 20 14 4.5681 -7.0602 3.6475 21 1 3.8890 -5.9294 4.3298 22 1 4.1194 -8.3422 4.2482 23 1 6.0380 -6.9253 3.8097 24 6 8.2666 -4.6306 1.0448 25 1 8.2072 -4.4492 2.1180 26 6 9.2190 -5.7884 0.7392 27 6 8.6903 -3.3480 0.2819 28 6 4.9007 -1.2957 -0.0025 29 6 3.6703 -0.6434 -0.0011 30 6 2.2771 -1.0990 -0.0005 31 6 1.8005 -2.5286 -0.0001 32 1 -0.3633 0.0004 -1.0276 33 1 -0.3633 -0.8903 0.5134 34 1 -0.3634 0.8896 0.5142 35 1 4.7702 2.5765 -0.0011 36 1 6.9210 1.4330 -0.0036 37 1 5.6627 -3.1953 1.0727 38 1 5.7339 -3.4319 -0.6959 39 1 6.2475 -5.6541 2.3330 40 1 2.5316 -8.1952 2.0195 41 1 9.3144 -5.9051 -0.3404 42 1 10.1977 -5.5772 1.1700 43 1 8.8233 -6.7079 1.1705 44 1 9.0788 -3.6015 -0.7045 45 1 9.4361 -2.7958 0.8538 46 1 4.9455 -2.3748 -0.0023 47 1 1.6854 -2.8734 -1.0278 48 1 2.5300 -3.1547 0.5136 49 1 0.8415 -2.5918 0.5139 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000939722886.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:45:00 Heat of formation + Delta-G solvation = 53.337826 kcal Electronic energy + Delta-G solvation = -30188.389501 eV Core-core repulsion = 26309.623153 eV Total energy + Delta-G solvation = -3878.766348 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.44508 -39.98853 -37.78197 -36.57306 -34.24461 -33.39925 -32.55081 -31.15099 -31.11469 -30.06252 -28.15894 -27.91171 -26.24278 -25.76302 -24.21336 -22.83252 -21.53773 -21.20476 -20.18904 -19.81486 -18.71932 -17.79144 -17.53439 -16.90518 -16.03836 -15.89901 -15.16915 -15.03435 -14.67413 -14.47616 -14.26531 -13.82664 -13.61784 -13.35866 -13.20841 -13.12657 -12.94958 -12.85853 -12.66587 -12.58467 -12.52574 -12.41731 -12.14245 -12.01506 -11.73875 -11.52544 -11.42660 -11.27190 -11.08415 -10.90226 -10.65906 -10.39131 -10.26332 -10.01487 -9.72929 -9.64993 -9.50287 -8.99982 -8.42255 -8.08798 -7.56440 -7.41012 -5.86391 -3.24203 1.05332 1.30930 2.63599 3.00021 3.10967 3.23279 3.32109 3.35364 3.41265 4.06744 4.50803 4.52838 4.66585 4.71895 4.98953 5.01679 5.02189 5.05053 5.08076 5.24808 5.32697 5.38475 5.42386 5.47893 5.49709 5.64425 5.66856 5.70015 5.75090 5.78380 5.87670 5.88080 5.95968 6.04785 6.07520 6.10121 6.17438 6.23936 6.32089 6.38704 6.44507 6.45841 6.47178 6.61270 6.69992 6.74703 6.88057 7.12715 7.46825 7.77346 7.88176 8.32118 8.42004 9.08828 9.81381 9.99621 11.30965 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.008316 B = 0.004644 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3366.193486 B = 6028.266295 C = 8877.055142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.058 3.942 3 N -0.591 5.591 4 H 0.412 0.588 5 C 0.118 3.882 6 C -0.147 4.147 7 C -0.043 4.043 8 C -0.165 4.165 9 C 0.577 3.423 10 O -0.556 6.556 11 N -0.610 5.610 12 C 0.063 3.937 13 C 0.180 3.820 14 H 0.076 0.924 15 N -0.736 5.736 16 C -0.252 4.252 17 H 0.093 0.907 18 C 0.014 3.986 19 N -0.927 5.927 20 Si 0.879 3.121 21 H -0.283 1.283 22 H -0.291 1.291 23 H -0.276 1.276 24 C -0.117 4.117 25 H 0.082 0.918 26 C -0.135 4.135 27 C 0.116 3.884 28 C -0.057 4.057 29 C -0.115 4.115 30 C -0.147 4.147 31 C -0.085 4.085 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.064 0.936 35 H 0.121 0.879 36 H 0.134 0.866 37 H 0.084 0.916 38 H 0.073 0.927 39 H 0.364 0.636 40 H 0.260 0.740 41 H 0.056 0.944 42 H 0.051 0.949 43 H 0.066 0.934 44 H 0.068 0.932 45 H 0.073 0.927 46 H 0.171 0.829 47 H 0.066 0.934 48 H 0.077 0.923 49 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.093 15.664 -2.896 15.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.048 4.048 3 N -0.195 5.195 4 H 0.248 0.752 5 C 0.010 3.990 6 C -0.167 4.167 7 C -0.063 4.063 8 C -0.170 4.170 9 C 0.368 3.632 10 O -0.436 6.436 11 N -0.343 5.343 12 C -0.062 4.062 13 C 0.068 3.932 14 H 0.094 0.906 15 N -0.377 5.377 16 C -0.382 4.382 17 H 0.111 0.889 18 C -0.183 4.183 19 N -0.574 5.574 20 Si 0.709 3.291 21 H -0.210 1.210 22 H -0.217 1.217 23 H -0.202 1.202 24 C -0.137 4.137 25 H 0.100 0.900 26 C -0.192 4.192 27 C -0.007 4.007 28 C -0.075 4.075 29 C -0.119 4.119 30 C -0.153 4.153 31 C -0.142 4.142 32 H 0.094 0.906 33 H 0.105 0.895 34 H 0.083 0.917 35 H 0.139 0.861 36 H 0.152 0.848 37 H 0.102 0.898 38 H 0.091 0.909 39 H 0.198 0.802 40 H 0.071 0.929 41 H 0.075 0.925 42 H 0.070 0.930 43 H 0.085 0.915 44 H 0.087 0.913 45 H 0.092 0.908 46 H 0.188 0.812 47 H 0.085 0.915 48 H 0.096 0.904 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.136 16.017 -3.111 16.317 hybrid contribution -0.121 0.584 1.377 1.500 sum 0.014 16.602 -1.734 16.692 Atomic orbital electron populations 1.20438 0.87745 1.03592 1.02969 1.20056 0.93257 0.85345 1.06135 1.41601 1.03988 1.08078 1.65802 0.75171 1.18417 0.84527 0.94317 1.01783 1.19593 0.89369 0.98926 1.08861 1.20510 0.97211 0.92889 0.95679 1.19510 0.92359 0.93950 1.11141 1.17891 0.88748 0.80309 0.76225 1.90718 1.36601 1.64703 1.51623 1.48355 1.09000 1.05508 1.71392 1.23681 0.88822 0.92163 1.01540 1.21282 0.88052 0.89242 0.94576 0.90599 1.42714 1.30978 1.58745 1.05294 1.19049 1.00476 1.23186 0.95456 0.88897 1.24634 0.97124 0.99280 0.97277 1.69693 1.17533 1.36210 1.33943 0.86650 0.77962 0.77379 0.87139 1.20976 1.21698 1.20225 1.22702 0.96626 0.94143 1.00238 0.89977 1.21625 0.97938 0.98012 1.01670 1.22293 0.87094 0.91170 1.00126 1.22495 0.89647 1.03116 0.92261 1.19079 0.93346 0.91682 1.07816 1.20252 0.90215 0.95251 1.09596 1.20218 1.01441 0.90309 1.02201 0.90630 0.89479 0.91713 0.86060 0.84802 0.89803 0.90884 0.80230 0.92942 0.92459 0.93034 0.91468 0.91337 0.90818 0.81237 0.91511 0.90413 0.91874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.72 10.18 36.01 0.37 -0.35 16 2 C 0.06 0.67 7.08 -81.77 -0.58 0.09 16 3 N -0.59 -6.40 6.05 -6.91 -0.04 -6.44 16 4 H 0.41 3.03 8.96 -40.82 -0.37 2.67 16 5 C 0.12 1.60 7.27 -83.95 -0.61 0.99 16 6 C -0.15 -1.84 10.00 -39.85 -0.40 -2.24 16 7 C -0.04 -0.61 9.51 -39.54 -0.38 -0.99 16 8 C -0.17 -2.67 5.87 -104.97 -0.62 -3.29 16 9 C 0.58 10.11 7.80 -12.42 -0.10 10.02 16 10 O -0.56 -10.91 16.65 5.30 0.09 -10.83 16 11 N -0.61 -9.91 3.32 -175.95 -0.58 -10.50 16 12 C 0.06 1.04 4.62 -3.07 -0.01 1.03 16 13 C 0.18 3.12 3.05 -66.10 -0.20 2.91 16 14 H 0.08 1.34 8.02 -51.93 -0.42 0.92 16 15 N -0.74 -15.60 4.98 -51.66 -0.26 -15.86 16 16 C -0.25 -6.42 10.46 -15.06 -0.16 -6.58 16 17 H 0.09 2.53 8.06 -52.48 -0.42 2.11 16 18 C 0.01 0.37 5.50 -17.43 -0.10 0.27 16 19 N -0.93 -27.20 13.97 55.49 0.78 -26.42 16 20 Si 0.88 20.81 27.73 -169.99 -4.71 16.10 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 23 H -0.28 -6.16 6.52 56.52 0.37 -5.79 16 24 C -0.12 -1.71 3.27 -88.36 -0.29 -2.00 16 25 H 0.08 1.24 8.01 -51.93 -0.42 0.82 16 26 C -0.13 -1.74 9.31 37.16 0.35 -1.39 16 27 C 0.12 1.68 6.36 -2.41 -0.02 1.67 16 28 C -0.06 -0.92 8.64 -38.86 -0.34 -1.25 16 29 C -0.11 -1.77 6.34 -105.16 -0.67 -2.44 16 30 C -0.15 -2.08 6.32 -102.69 -0.65 -2.73 16 31 C -0.08 -1.18 10.17 36.01 0.37 -0.82 16 32 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.09 0.68 7.04 -51.93 -0.37 0.32 16 34 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 36 H 0.13 1.81 7.64 -52.48 -0.40 1.41 16 37 H 0.08 1.48 6.55 -51.93 -0.34 1.14 16 38 H 0.07 1.19 6.80 -51.93 -0.35 0.83 16 39 H 0.36 7.75 5.59 -40.82 -0.23 7.52 16 40 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 41 H 0.06 0.69 8.07 -51.93 -0.42 0.27 16 42 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.07 0.93 7.99 -51.93 -0.41 0.51 16 45 H 0.07 1.06 8.09 -51.93 -0.42 0.64 16 46 H 0.17 2.76 2.76 -58.17 -0.16 2.60 16 47 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 48 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 49 H 0.06 0.77 7.05 -51.93 -0.37 0.41 16 LS Contribution 391.05 15.07 5.89 5.89 Total: -1.00 -31.89 391.05 -10.08 -41.97 By element: Atomic # 1 Polarization: 20.40 SS G_CDS: -7.22 Total: 13.18 kcal Atomic # 6 Polarization: -3.07 SS G_CDS: -4.02 Total: -7.10 kcal Atomic # 7 Polarization: -59.11 SS G_CDS: -0.11 Total: -59.22 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: 0.09 Total: -10.83 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -4.71 Total: 16.10 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -31.89 -10.08 -41.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939722886.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.312 kcal (2) G-P(sol) polarization free energy of solvation -31.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.974 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds