Wall clock time and date at job start Wed Apr 1 2020 00:44:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.36861 * 125.01912 * 2 1 4 4 H 0.97005 * 125.00993 * 0.03422 * 3 2 1 5 5 C 1.37398 * 109.98172 * 180.28623 * 3 2 1 6 6 C 1.39371 * 133.24381 * 180.44592 * 5 3 2 7 7 C 1.36313 * 120.23790 * 179.61913 * 6 5 3 8 8 C 1.40209 * 120.66550 * 359.70600 * 7 6 5 9 9 C 1.47656 * 119.97257 * 180.02562 * 8 7 6 10 10 O 1.21579 * 120.00114 * 352.02245 * 9 8 7 11 11 N 1.34774 * 120.00125 * 172.01277 * 9 8 7 12 12 C 1.47020 * 125.64987 * 5.34993 * 11 9 8 13 13 C 1.54320 * 107.27334 * 181.02150 * 12 11 9 14 14 H 1.09000 * 110.71993 * 263.82487 * 13 12 11 15 15 N 1.46498 * 110.71871 * 140.73625 * 13 12 11 16 16 C 1.36929 * 120.00542 * 86.45338 * 15 13 12 17 17 H 1.08003 * 119.99837 * 359.97438 * 16 15 13 18 18 C 1.38809 * 120.00399 * 179.97438 * 16 15 13 19 19 N 1.31626 * 120.00246 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 119.99789 * 359.97438 * 18 16 15 21 21 H 1.48503 * 109.47050 * 90.00053 * 20 18 16 22 22 H 1.48510 * 109.47030 * 209.99876 * 20 18 16 23 23 H 1.48494 * 109.47498 * 329.99894 * 20 18 16 24 24 C 1.55151 * 102.94189 * 22.18969 * 13 12 11 25 25 H 1.09005 * 111.00330 * 82.57770 * 24 13 12 26 26 C 1.53001 * 111.00549 * 206.38636 * 24 13 12 27 27 C 1.47422 * 125.64785 * 185.04041 * 11 9 8 28 28 C 1.39153 * 120.05662 * 0.02562 * 8 7 6 29 29 C 1.39266 * 119.39144 * 359.97438 * 28 8 7 30 30 C 1.34195 * 125.02288 * 180.02562 * 2 1 3 31 31 C 1.50700 * 126.53861 * 359.95156 * 30 2 1 32 32 H 1.08996 * 109.47128 * 89.97551 * 1 2 3 33 33 H 1.09005 * 109.47055 * 209.97024 * 1 2 3 34 34 H 1.08993 * 109.47371 * 329.97058 * 1 2 3 35 35 H 1.08000 * 119.87991 * 359.32358 * 6 5 3 36 36 H 1.08003 * 119.66992 * 179.69277 * 7 6 5 37 37 H 1.09005 * 109.87924 * 300.44078 * 12 11 9 38 38 H 1.09002 * 109.88196 * 61.59651 * 12 11 9 39 39 H 0.97004 * 119.99803 * 266.45002 * 15 13 12 40 40 H 0.96996 * 119.99589 * 180.02562 * 19 18 16 41 41 H 1.09002 * 109.46958 * 60.00175 * 26 24 13 42 42 H 1.08997 * 109.47445 * 180.02562 * 26 24 13 43 43 H 1.09003 * 109.47132 * 299.99915 * 26 24 13 44 44 H 1.09003 * 110.36714 * 274.74669 * 27 11 9 45 45 H 1.09002 * 110.37206 * 37.06972 * 27 11 9 46 46 H 1.08001 * 120.29867 * 180.02562 * 28 8 7 47 47 H 1.09005 * 109.46583 * 90.02893 * 31 30 2 48 48 H 1.09001 * 109.47019 * 210.02379 * 31 30 2 49 49 H 1.08991 * 109.47698 * 330.02987 * 31 30 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2924 1.1208 0.0000 4 1 1.9611 2.0325 0.0005 5 6 3.6193 0.7644 -0.0065 6 6 4.8048 1.4971 -0.0013 7 6 6.0079 0.8562 -0.0026 8 6 6.0720 -0.5445 -0.0030 9 6 7.3835 -1.2229 -0.0038 10 8 8.4024 -0.5760 -0.1504 11 7 7.4511 -2.5591 0.1580 12 6 6.3014 -3.4723 0.2339 13 6 6.8596 -4.8952 0.4468 14 1 6.9374 -5.4250 -0.5026 15 7 6.0243 -5.6440 1.3890 16 6 4.9286 -6.3298 0.9373 17 1 4.6799 -6.3184 -0.1137 18 6 4.1375 -7.0398 1.8300 19 7 3.0845 -7.6994 1.3956 20 14 4.5681 -7.0602 3.6475 21 1 3.8890 -5.9294 4.3298 22 1 4.1194 -8.3422 4.2482 23 1 6.0380 -6.9253 3.8097 24 6 8.2666 -4.6306 1.0448 25 1 8.2072 -4.4492 2.1180 26 6 9.2190 -5.7884 0.7392 27 6 8.6903 -3.3480 0.2819 28 6 4.9007 -1.2957 -0.0025 29 6 3.6703 -0.6434 -0.0011 30 6 2.2771 -1.0990 -0.0005 31 6 1.8005 -2.5286 -0.0001 32 1 -0.3633 0.0004 -1.0276 33 1 -0.3633 -0.8903 0.5134 34 1 -0.3634 0.8896 0.5142 35 1 4.7702 2.5765 -0.0011 36 1 6.9210 1.4330 -0.0036 37 1 5.6627 -3.1953 1.0727 38 1 5.7339 -3.4319 -0.6959 39 1 6.2475 -5.6541 2.3330 40 1 2.5316 -8.1952 2.0195 41 1 9.3144 -5.9051 -0.3404 42 1 10.1977 -5.5772 1.1700 43 1 8.8233 -6.7079 1.1705 44 1 9.0788 -3.6015 -0.7045 45 1 9.4361 -2.7958 0.8538 46 1 4.9455 -2.3748 -0.0023 47 1 1.6854 -2.8734 -1.0278 48 1 2.5300 -3.1547 0.5136 49 1 0.8415 -2.5918 0.5139 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000939722886.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:44:59 Heat of formation + Delta-G solvation = 34.364882 kcal Electronic energy + Delta-G solvation = -30189.212230 eV Core-core repulsion = 26309.623153 eV Total energy + Delta-G solvation = -3879.589077 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.48740 -41.29489 -39.13883 -37.73355 -35.97907 -34.55001 -33.86607 -32.93463 -32.03956 -31.19912 -29.64148 -28.97369 -27.35646 -26.85554 -25.83732 -24.21347 -22.64675 -22.57096 -21.58956 -20.99227 -19.81304 -19.48601 -18.85567 -18.07507 -17.35011 -17.19403 -16.44580 -16.32614 -16.01556 -15.79554 -15.56291 -15.14082 -14.96895 -14.83849 -14.54475 -14.19928 -14.14463 -13.99538 -13.84149 -13.69746 -13.67929 -13.51361 -13.38020 -13.12175 -12.94688 -12.93678 -12.86435 -12.61941 -12.31992 -12.16861 -12.12517 -11.91090 -11.78075 -11.56249 -11.42830 -11.12348 -10.81973 -10.59100 -9.76628 -9.32508 -9.17968 -8.58861 -7.97044 -5.31876 -0.10983 0.22855 1.42111 1.43428 1.50017 1.62817 1.82456 1.92944 2.09586 2.51736 2.89361 3.28752 3.32197 3.56064 3.60315 3.73330 3.81986 3.83515 4.04616 4.12277 4.22470 4.25263 4.27684 4.36444 4.39494 4.45341 4.54859 4.65031 4.72039 4.76154 4.79557 4.80457 4.85350 4.89125 4.94277 5.04454 5.06556 5.09535 5.11339 5.17507 5.26821 5.29158 5.37715 5.43179 5.50315 5.63779 5.81022 5.82473 6.07212 6.25650 6.41855 6.65521 7.05900 7.10913 7.84178 8.03216 9.23420 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.008316 B = 0.004644 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3366.193486 B = 6028.266295 C = 8877.055142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.083 3.917 3 N -0.574 5.574 4 H 0.432 0.568 5 C 0.112 3.888 6 C -0.129 4.129 7 C -0.057 4.057 8 C -0.181 4.181 9 C 0.574 3.426 10 O -0.581 6.581 11 N -0.610 5.610 12 C 0.079 3.921 13 C 0.174 3.826 14 H 0.073 0.927 15 N -0.736 5.736 16 C -0.227 4.227 17 H 0.065 0.935 18 C -0.049 4.049 19 N -0.976 5.976 20 Si 0.939 3.061 21 H -0.284 1.284 22 H -0.299 1.299 23 H -0.251 1.251 24 C -0.105 4.105 25 H 0.082 0.918 26 C -0.131 4.131 27 C 0.116 3.884 28 C -0.073 4.073 29 C -0.140 4.140 30 C -0.191 4.191 31 C -0.077 4.077 32 H 0.092 0.908 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.160 0.840 36 H 0.140 0.860 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.367 0.633 40 H 0.257 0.743 41 H 0.065 0.935 42 H 0.075 0.925 43 H 0.053 0.947 44 H 0.082 0.918 45 H 0.080 0.920 46 H 0.157 0.843 47 H 0.064 0.936 48 H 0.042 0.958 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.086 18.192 -2.298 18.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.024 4.024 3 N -0.179 5.179 4 H 0.273 0.727 5 C 0.002 3.998 6 C -0.149 4.149 7 C -0.077 4.077 8 C -0.185 4.185 9 C 0.366 3.634 10 O -0.463 6.463 11 N -0.341 5.341 12 C -0.046 4.046 13 C 0.064 3.936 14 H 0.091 0.909 15 N -0.378 5.378 16 C -0.358 4.358 17 H 0.083 0.917 18 C -0.241 4.241 19 N -0.626 5.626 20 Si 0.768 3.232 21 H -0.211 1.211 22 H -0.226 1.226 23 H -0.176 1.176 24 C -0.124 4.124 25 H 0.100 0.900 26 C -0.188 4.188 27 C -0.006 4.006 28 C -0.091 4.091 29 C -0.145 4.145 30 C -0.197 4.197 31 C -0.134 4.134 32 H 0.110 0.890 33 H 0.106 0.894 34 H 0.109 0.891 35 H 0.177 0.823 36 H 0.158 0.842 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.201 0.799 40 H 0.066 0.934 41 H 0.084 0.916 42 H 0.094 0.906 43 H 0.072 0.928 44 H 0.100 0.900 45 H 0.099 0.901 46 H 0.174 0.826 47 H 0.083 0.917 48 H 0.061 0.939 49 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 0.362 18.593 -2.521 18.767 hybrid contribution -0.248 -0.103 1.081 1.114 sum 0.114 18.490 -1.440 18.547 Atomic orbital electron populations 1.20604 0.84749 1.04977 1.04422 1.20553 0.94863 0.84592 1.02437 1.41605 1.02895 1.09076 1.64315 0.72736 1.18552 0.85914 0.93566 1.01721 1.19910 0.88137 1.00652 1.06229 1.20651 0.98365 0.92099 0.96557 1.19564 0.91575 0.94972 1.12379 1.18157 0.89044 0.80456 0.75765 1.90688 1.37426 1.65131 1.53063 1.48384 1.09412 1.05403 1.70929 1.23361 0.88691 0.91629 1.00940 1.21447 0.89330 0.88848 0.94003 0.90875 1.42640 1.30366 1.58796 1.06017 1.18981 1.00914 1.21764 0.94153 0.91667 1.25295 0.97422 0.99930 1.01490 1.69854 1.19246 1.38212 1.35252 0.85651 0.79055 0.76611 0.81927 1.21053 1.22623 1.17569 1.22632 0.94852 0.94954 1.00001 0.89995 1.21608 0.98462 0.96323 1.02418 1.22424 0.86510 0.90714 1.00973 1.22350 0.90389 1.02562 0.93835 1.19380 0.93629 0.93219 1.08262 1.20342 0.90377 0.95903 1.13109 1.20086 1.01137 0.90358 1.01816 0.88986 0.89354 0.89087 0.82279 0.84185 0.91146 0.91206 0.79927 0.93445 0.91595 0.90581 0.92820 0.90000 0.90139 0.82632 0.91707 0.93864 0.90289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.14 10.18 71.24 0.72 -0.41 16 2 C 0.08 1.74 7.08 40.85 0.29 2.03 16 3 N -0.57 -10.74 6.05 -175.78 -1.06 -11.80 16 4 H 0.43 4.59 8.96 -92.70 -0.83 3.76 16 5 C 0.11 2.83 7.27 39.19 0.28 3.12 16 6 C -0.13 -2.94 10.00 22.09 0.22 -2.72 16 7 C -0.06 -1.57 9.51 22.30 0.21 -1.36 16 8 C -0.18 -5.94 5.87 -20.09 -0.12 -6.06 16 9 C 0.57 20.32 7.80 86.73 0.68 20.99 16 10 O -0.58 -22.76 16.65 -3.97 -0.07 -22.83 16 11 N -0.61 -19.93 3.32 -828.85 -2.76 -22.69 16 12 C 0.08 2.70 4.62 86.73 0.40 3.10 16 13 C 0.17 6.05 3.05 46.18 0.14 6.19 16 14 H 0.07 2.61 8.02 -2.39 -0.02 2.59 16 15 N -0.74 -31.41 4.98 -317.36 -1.58 -32.99 16 16 C -0.23 -11.92 10.46 84.03 0.88 -11.04 16 17 H 0.07 3.74 8.06 -2.91 -0.02 3.71 16 18 C -0.05 -2.72 5.50 84.86 0.47 -2.26 16 19 N -0.98 -59.36 13.97 21.65 0.30 -59.05 16 20 Si 0.94 43.44 27.73 68.60 1.90 45.35 16 21 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 22 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 23 H -0.25 -10.44 6.52 99.48 0.65 -9.79 16 24 C -0.10 -2.93 3.27 -9.33 -0.03 -2.96 16 25 H 0.08 2.33 8.01 -2.38 -0.02 2.32 16 26 C -0.13 -3.10 9.31 71.98 0.67 -2.43 16 27 C 0.12 3.22 6.36 86.93 0.55 3.78 16 28 C -0.07 -2.44 8.64 22.74 0.20 -2.25 16 29 C -0.14 -4.37 6.34 -20.21 -0.13 -4.50 16 30 C -0.19 -5.43 6.32 -18.61 -0.12 -5.55 16 31 C -0.08 -2.26 10.17 71.24 0.72 -1.53 16 32 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.09 1.16 7.04 -2.38 -0.02 1.14 16 34 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.16 2.37 8.06 -2.91 -0.02 2.34 16 36 H 0.14 3.66 7.64 -2.91 -0.02 3.64 16 37 H 0.07 2.62 6.55 -2.38 -0.02 2.61 16 38 H 0.07 2.42 6.80 -2.39 -0.02 2.41 16 39 H 0.37 15.32 5.59 -92.71 -0.52 14.80 16 40 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 41 H 0.07 1.45 8.07 -2.39 -0.02 1.43 16 42 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 43 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.08 2.09 7.99 -2.39 -0.02 2.07 16 45 H 0.08 2.18 8.09 -2.39 -0.02 2.16 16 46 H 0.16 5.47 2.76 -8.25 -0.02 5.45 16 47 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 48 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 49 H 0.08 1.97 7.05 -2.39 -0.02 1.95 16 Total: -1.00 -71.46 391.05 2.36 -69.10 By element: Atomic # 1 Polarization: 39.19 SS G_CDS: -0.43 Total: 38.77 kcal Atomic # 6 Polarization: -9.90 SS G_CDS: 6.04 Total: -3.85 kcal Atomic # 7 Polarization: -121.44 SS G_CDS: -5.10 Total: -126.54 kcal Atomic # 8 Polarization: -22.76 SS G_CDS: -0.07 Total: -22.83 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 1.90 Total: 45.35 kcal Total: -71.46 2.36 -69.10 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939722886.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.469 kcal (2) G-P(sol) polarization free energy of solvation -71.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.104 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds