Wall clock time and date at job start Wed Apr 1 2020 00:39:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.52549 * 2 1 4 4 C 1.53193 * 109.49489 * 239.91593 * 2 1 3 5 5 N 1.46929 * 108.77180 * 185.41345 * 4 2 1 6 6 C 1.36933 * 120.63031 * 233.58211 * 5 4 2 7 7 H 1.07999 * 119.99980 * 152.62767 * 6 5 4 8 8 C 1.38814 * 120.00331 * 332.63713 * 6 5 4 9 9 N 1.31619 * 120.00096 * 159.33490 * 8 6 5 10 10 Si 1.86802 * 119.99824 * 339.33854 * 8 6 5 11 11 H 1.48499 * 109.46980 * 92.88910 * 10 8 6 12 12 H 1.48494 * 109.46947 * 212.89054 * 10 8 6 13 13 H 1.48497 * 109.46879 * 332.88794 * 10 8 6 14 14 C 1.46929 * 118.73772 * 53.61251 * 5 4 2 15 15 C 1.53190 * 108.77643 * 306.38769 * 14 5 4 16 16 C 1.53044 * 109.49501 * 120.08196 * 2 1 3 17 17 H 1.08995 * 109.45558 * 61.30272 * 16 2 1 18 18 N 1.46499 * 109.46160 * 301.33058 * 16 2 1 19 19 C 1.34772 * 120.00308 * 154.93291 * 18 16 2 20 20 O 1.21778 * 119.99621 * 0.02562 * 19 18 16 21 21 C 1.46211 * 120.00348 * 180.02562 * 19 18 16 22 22 C 1.41736 * 126.79689 * 0.02562 * 21 19 18 23 23 C 1.34522 * 107.77514 * 179.97438 * 22 21 19 24 24 N 1.36952 * 109.60185 * 0.26321 * 23 22 21 25 25 C 1.36708 * 131.34282 * 180.48094 * 24 23 22 26 26 C 1.35002 * 120.75494 * 179.61751 * 25 24 23 27 27 C 1.40305 * 120.37764 * 359.67048 * 26 25 24 28 28 C 1.36340 * 119.46116 * 0.02562 * 27 26 25 29 29 C 1.36942 * 108.74439 * 359.56691 * 24 23 22 30 30 H 1.09002 * 109.47205 * 299.92002 * 1 2 3 31 31 H 1.08994 * 109.46993 * 59.92177 * 1 2 3 32 32 H 1.09002 * 109.47237 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47216 * 180.02562 * 3 2 1 34 34 H 1.09007 * 109.47229 * 300.07758 * 3 2 1 35 35 H 1.08994 * 109.47476 * 60.08066 * 3 2 1 36 36 H 1.08999 * 109.58560 * 65.63215 * 4 2 1 37 37 H 1.08998 * 109.70731 * 305.27028 * 4 2 1 38 38 H 0.97003 * 119.99890 * 179.97438 * 9 8 6 39 39 H 1.08997 * 109.58230 * 186.60090 * 14 5 4 40 40 H 1.08998 * 109.70178 * 66.24595 * 14 5 4 41 41 H 1.09003 * 109.49641 * 294.68912 * 15 14 5 42 42 H 1.08993 * 109.52328 * 174.60274 * 15 14 5 43 43 H 0.96998 * 119.99821 * 334.94464 * 18 16 2 44 44 H 1.08004 * 126.11310 * 359.93595 * 22 21 19 45 45 H 1.08001 * 125.19558 * 180.02562 * 23 22 21 46 46 H 1.08007 * 119.62031 * 359.28649 * 25 24 23 47 47 H 1.07993 * 119.80784 * 179.68977 * 26 25 24 48 48 H 1.08003 * 120.26943 * 180.02562 * 27 26 25 49 49 H 1.07997 * 120.34112 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0414 1.4419 0.0000 4 6 2.0413 -0.7239 -1.2496 5 7 3.5046 -0.8292 -1.1695 6 6 4.2935 -0.3795 -2.1944 7 1 5.3005 -0.0447 -1.9938 8 6 3.7990 -0.3539 -3.4913 9 7 4.3574 0.4252 -4.3932 10 14 2.3409 -1.4250 -3.9562 11 1 1.0850 -0.6498 -3.7922 12 1 2.4750 -1.8569 -5.3706 13 1 2.3037 -2.6199 -3.0752 14 6 4.1052 -1.4268 0.0309 15 6 3.5708 -0.6951 1.2661 16 6 2.0408 -0.7231 1.2484 17 1 1.6967 -1.7573 1.2352 18 7 1.5266 -0.0530 2.4453 19 6 1.3972 -0.7385 3.5984 20 8 1.7082 -1.9150 3.6455 21 6 0.8835 -0.0698 4.7929 22 6 0.4804 1.2848 4.9004 23 6 0.0735 1.4930 6.1656 24 7 0.2004 0.3349 6.8855 25 6 -0.0873 0.0467 8.1905 26 6 0.1182 -1.1924 8.6854 27 6 0.6258 -2.2096 7.8631 28 6 0.9111 -1.9372 6.5580 29 6 0.6911 -0.6434 6.0624 30 1 -0.3634 0.5126 0.8907 31 1 -0.3633 0.5150 -0.8892 32 1 -0.3634 -1.0277 -0.0005 33 1 3.1314 1.4409 -0.0005 34 1 1.6774 1.9566 -0.8893 35 1 1.6797 1.9557 0.8906 36 1 1.7638 -0.1580 -2.1389 37 1 1.6054 -1.7216 -1.3005 38 1 4.0120 0.4428 -5.2995 39 1 5.1895 -1.3247 -0.0137 40 1 3.8396 -2.4824 0.0880 41 1 3.9159 0.3388 1.2541 42 1 3.9334 -1.1892 2.1674 43 1 1.2791 0.8842 2.4079 44 1 0.4974 2.0188 4.1082 45 1 -0.2932 2.4312 6.5551 46 1 -0.4785 0.8207 8.8344 47 1 -0.1097 -1.4019 9.7200 48 1 0.7891 -3.2004 8.2607 49 1 1.3028 -2.7094 5.9125 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000940881417.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:39:59 Heat of formation + Delta-G solvation = 65.017397 kcal Electronic energy + Delta-G solvation = -30334.837905 eV Core-core repulsion = 26456.578021 eV Total energy + Delta-G solvation = -3878.259884 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.52018 -39.87823 -38.06074 -36.82013 -34.63486 -33.23251 -32.87160 -31.98363 -30.47610 -29.88483 -28.22098 -26.84451 -26.16810 -25.16595 -23.95169 -23.33491 -22.12972 -21.72195 -20.46581 -19.89704 -18.62474 -17.97275 -17.04799 -16.59668 -16.14640 -15.87543 -15.78681 -15.53806 -14.94770 -14.65935 -14.45699 -14.29341 -14.00454 -13.72589 -13.55827 -13.24389 -13.20324 -12.94423 -12.68870 -12.37412 -12.13930 -11.97397 -11.91478 -11.67572 -11.65262 -11.62185 -11.17254 -11.04104 -10.68315 -10.61490 -10.58625 -10.35827 -10.07993 -9.84640 -9.74149 -9.56071 -9.36948 -8.98204 -8.61833 -8.56132 -7.60966 -6.91764 -5.91061 -3.25840 0.45422 0.94940 2.18356 2.33073 3.07661 3.34981 3.51941 3.55507 3.57609 3.74805 4.14860 4.45321 4.50942 4.56940 4.63403 4.80166 4.93881 4.98213 5.04252 5.20690 5.33485 5.37645 5.40058 5.47956 5.51997 5.53647 5.80844 5.82643 5.86794 5.94096 5.99276 6.02149 6.05240 6.11039 6.21465 6.31027 6.36671 6.42896 6.44791 6.50181 6.56995 6.59231 6.65694 6.71750 6.77400 6.88892 6.90878 6.95979 7.10359 7.87130 8.00806 8.37130 8.57661 8.98744 9.76692 10.15140 11.24974 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.025913 B = 0.002644 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.297657 B =10586.791975 C =10880.611759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.089 4.089 3 C -0.129 4.129 4 C 0.140 3.860 5 N -0.603 5.603 6 C -0.254 4.254 7 H 0.086 0.914 8 C 0.024 3.976 9 N -0.909 5.909 10 Si 0.878 3.122 11 H -0.288 1.288 12 H -0.304 1.304 13 H -0.270 1.270 14 C 0.151 3.849 15 C -0.144 4.144 16 C 0.166 3.834 17 H 0.081 0.919 18 N -0.716 5.716 19 C 0.589 3.411 20 O -0.556 6.556 21 C -0.234 4.234 22 C -0.106 4.106 23 C -0.066 4.066 24 N -0.339 5.339 25 C 0.044 3.956 26 C -0.142 4.142 27 C -0.122 4.122 28 C -0.077 4.077 29 C 0.109 3.891 30 H 0.051 0.949 31 H 0.055 0.945 32 H 0.051 0.949 33 H 0.075 0.925 34 H 0.054 0.946 35 H 0.034 0.966 36 H 0.077 0.923 37 H 0.026 0.974 38 H 0.262 0.738 39 H 0.064 0.936 40 H 0.024 0.976 41 H 0.067 0.933 42 H 0.059 0.941 43 H 0.395 0.605 44 H 0.153 0.847 45 H 0.172 0.828 46 H 0.163 0.837 47 H 0.147 0.853 48 H 0.137 0.863 49 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.567 1.960 26.407 28.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.091 4.091 3 C -0.186 4.186 4 C 0.014 3.986 5 N -0.326 5.326 6 C -0.383 4.383 7 H 0.103 0.897 8 C -0.175 4.175 9 N -0.552 5.552 10 Si 0.708 3.292 11 H -0.216 1.216 12 H -0.233 1.233 13 H -0.195 1.195 14 C 0.024 3.976 15 C -0.184 4.184 16 C 0.062 3.938 17 H 0.100 0.900 18 N -0.366 5.366 19 C 0.378 3.622 20 O -0.436 6.436 21 C -0.244 4.244 22 C -0.128 4.128 23 C -0.191 4.191 24 N -0.003 5.003 25 C -0.077 4.077 26 C -0.162 4.162 27 C -0.143 4.143 28 C -0.095 4.095 29 C 0.000 4.000 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.094 0.906 34 H 0.073 0.927 35 H 0.053 0.947 36 H 0.095 0.905 37 H 0.044 0.956 38 H 0.071 0.929 39 H 0.083 0.917 40 H 0.042 0.958 41 H 0.085 0.915 42 H 0.077 0.923 43 H 0.230 0.770 44 H 0.170 0.830 45 H 0.190 0.810 46 H 0.180 0.820 47 H 0.164 0.836 48 H 0.155 0.845 49 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -11.376 1.282 26.447 28.819 hybrid contribution -1.075 0.064 -0.315 1.122 sum -12.450 1.346 26.133 28.978 Atomic orbital electron populations 1.21827 0.95166 1.01507 1.01222 1.21346 0.94555 0.97107 0.96103 1.21760 1.03082 0.94027 0.99762 1.21397 0.84968 0.96940 0.95336 1.44364 1.00557 1.69947 1.17759 1.18905 0.98461 1.35811 0.85085 0.89671 1.25261 0.97871 0.98696 0.95675 1.69837 1.43276 1.38009 1.04092 0.87024 0.82731 0.82672 0.76752 1.21623 1.23260 1.19476 1.20896 0.97226 0.94183 0.85278 1.22445 0.94765 1.01923 0.99292 1.20903 0.93851 0.96678 0.82352 0.90049 1.46005 1.66249 1.14287 1.10055 1.16988 0.77274 0.85842 0.82141 1.90765 1.51798 1.15965 1.85081 1.19474 1.16807 0.94892 0.93206 1.21056 1.00129 0.95445 0.96160 1.21662 1.15130 0.89992 0.92290 1.41529 1.40663 1.10249 1.07855 1.21671 1.03167 0.99165 0.83665 1.20786 1.02271 0.91883 1.01256 1.21138 0.99757 0.99951 0.93495 1.20937 0.98239 0.94371 0.95980 1.18659 1.01876 0.89409 0.90066 0.93039 0.92588 0.93004 0.90594 0.92719 0.94680 0.90545 0.95635 0.92863 0.91705 0.95790 0.91460 0.92274 0.76988 0.82980 0.81035 0.82012 0.83551 0.84471 0.82572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 8.31 37.16 0.31 -1.79 16 2 C -0.09 -1.54 0.56 -154.39 -0.09 -1.62 16 3 C -0.13 -2.16 7.83 37.15 0.29 -1.87 16 4 C 0.14 3.04 2.89 -3.71 -0.01 3.03 16 5 N -0.60 -14.20 2.21 -172.32 -0.38 -14.59 16 6 C -0.25 -7.02 10.03 -15.06 -0.15 -7.17 16 7 H 0.09 2.51 8.06 -52.49 -0.42 2.09 16 8 C 0.02 0.68 5.23 -17.43 -0.09 0.59 16 9 N -0.91 -27.73 13.97 55.49 0.78 -26.95 16 10 Si 0.88 22.49 24.34 -169.99 -4.14 18.35 16 11 H -0.29 -7.09 6.62 56.52 0.37 -6.72 16 12 H -0.30 -7.97 7.11 56.52 0.40 -7.57 16 13 H -0.27 -6.87 6.64 56.52 0.38 -6.49 16 14 C 0.15 3.08 6.52 -3.71 -0.02 3.05 16 15 C -0.14 -2.57 5.31 -26.61 -0.14 -2.71 16 16 C 0.17 2.81 1.57 -67.89 -0.11 2.71 16 17 H 0.08 1.54 7.57 -51.93 -0.39 1.15 16 18 N -0.72 -10.37 4.28 -55.21 -0.24 -10.60 16 19 C 0.59 9.26 7.74 -13.06 -0.10 9.16 16 20 O -0.56 -10.43 15.32 5.12 0.08 -10.35 16 21 C -0.23 -3.12 6.20 -104.46 -0.65 -3.77 16 22 C -0.11 -1.08 10.27 -39.56 -0.41 -1.49 16 23 C -0.07 -0.57 11.53 -16.58 -0.19 -0.76 16 24 N -0.34 -3.32 2.92 -60.80 -0.18 -3.49 16 25 C 0.04 0.30 10.89 -16.53 -0.18 0.12 16 26 C -0.14 -0.89 9.98 -39.95 -0.40 -1.29 16 27 C -0.12 -0.99 10.09 -39.49 -0.40 -1.39 16 28 C -0.08 -0.87 9.72 -39.50 -0.38 -1.25 16 29 C 0.11 1.36 6.70 -83.91 -0.56 0.80 16 30 H 0.05 0.67 7.36 -51.93 -0.38 0.29 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.08 1.44 5.97 -51.93 -0.31 1.13 16 34 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.03 0.46 6.58 -51.93 -0.34 0.12 16 36 H 0.08 1.82 4.50 -51.93 -0.23 1.58 16 37 H 0.03 0.57 7.07 -51.93 -0.37 0.20 16 38 H 0.26 7.61 8.31 -40.82 -0.34 7.28 16 39 H 0.06 1.31 7.93 -51.93 -0.41 0.90 16 40 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.07 1.20 6.33 -51.93 -0.33 0.87 16 42 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.39 4.85 5.63 -40.82 -0.23 4.62 16 44 H 0.15 1.19 7.53 -52.48 -0.40 0.79 16 45 H 0.17 0.89 8.06 -52.49 -0.42 0.47 16 46 H 0.16 0.53 8.06 -52.48 -0.42 0.10 16 47 H 0.15 0.45 8.06 -52.49 -0.42 0.03 16 48 H 0.14 0.78 8.06 -52.48 -0.42 0.36 16 49 H 0.16 1.93 7.07 -52.49 -0.37 1.56 16 LS Contribution 377.59 15.07 5.69 5.69 Total: -1.00 -33.99 377.59 -8.85 -42.84 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -7.18 Total: 4.76 kcal Atomic # 6 Polarization: -2.37 SS G_CDS: -3.28 Total: -5.65 kcal Atomic # 7 Polarization: -55.62 SS G_CDS: -0.02 Total: -55.64 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: 0.08 Total: -10.35 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -4.14 Total: 18.35 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.99 -8.85 -42.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000940881417.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.857 kcal (2) G-P(sol) polarization free energy of solvation -33.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds