Wall clock time and date at job start Wed Apr 1 2020 00:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.52549 * 2 1 4 4 C 1.53193 * 109.49489 * 239.91593 * 2 1 3 5 5 N 1.46929 * 108.77180 * 185.41345 * 4 2 1 6 6 C 1.36933 * 120.63031 * 233.58211 * 5 4 2 7 7 H 1.07999 * 119.99980 * 152.62767 * 6 5 4 8 8 C 1.38814 * 120.00331 * 332.63713 * 6 5 4 9 9 N 1.31619 * 120.00096 * 159.33490 * 8 6 5 10 10 Si 1.86802 * 119.99824 * 339.33854 * 8 6 5 11 11 H 1.48499 * 109.46980 * 92.88910 * 10 8 6 12 12 H 1.48494 * 109.46947 * 212.89054 * 10 8 6 13 13 H 1.48497 * 109.46879 * 332.88794 * 10 8 6 14 14 C 1.46929 * 118.73772 * 53.61251 * 5 4 2 15 15 C 1.53190 * 108.77643 * 306.38769 * 14 5 4 16 16 C 1.53044 * 109.49501 * 120.08196 * 2 1 3 17 17 H 1.08995 * 109.45558 * 61.30272 * 16 2 1 18 18 N 1.46499 * 109.46160 * 301.33058 * 16 2 1 19 19 C 1.34772 * 120.00308 * 154.93291 * 18 16 2 20 20 O 1.21778 * 119.99621 * 0.02562 * 19 18 16 21 21 C 1.46211 * 120.00348 * 180.02562 * 19 18 16 22 22 C 1.41736 * 126.79689 * 0.02562 * 21 19 18 23 23 C 1.34522 * 107.77514 * 179.97438 * 22 21 19 24 24 N 1.36952 * 109.60185 * 0.26321 * 23 22 21 25 25 C 1.36708 * 131.34282 * 180.48094 * 24 23 22 26 26 C 1.35002 * 120.75494 * 179.61751 * 25 24 23 27 27 C 1.40305 * 120.37764 * 359.67048 * 26 25 24 28 28 C 1.36340 * 119.46116 * 0.02562 * 27 26 25 29 29 C 1.36942 * 108.74439 * 359.56691 * 24 23 22 30 30 H 1.09002 * 109.47205 * 299.92002 * 1 2 3 31 31 H 1.08994 * 109.46993 * 59.92177 * 1 2 3 32 32 H 1.09002 * 109.47237 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47216 * 180.02562 * 3 2 1 34 34 H 1.09007 * 109.47229 * 300.07758 * 3 2 1 35 35 H 1.08994 * 109.47476 * 60.08066 * 3 2 1 36 36 H 1.08999 * 109.58560 * 65.63215 * 4 2 1 37 37 H 1.08998 * 109.70731 * 305.27028 * 4 2 1 38 38 H 0.97003 * 119.99890 * 179.97438 * 9 8 6 39 39 H 1.08997 * 109.58230 * 186.60090 * 14 5 4 40 40 H 1.08998 * 109.70178 * 66.24595 * 14 5 4 41 41 H 1.09003 * 109.49641 * 294.68912 * 15 14 5 42 42 H 1.08993 * 109.52328 * 174.60274 * 15 14 5 43 43 H 0.96998 * 119.99821 * 334.94464 * 18 16 2 44 44 H 1.08004 * 126.11310 * 359.93595 * 22 21 19 45 45 H 1.08001 * 125.19558 * 180.02562 * 23 22 21 46 46 H 1.08007 * 119.62031 * 359.28649 * 25 24 23 47 47 H 1.07993 * 119.80784 * 179.68977 * 26 25 24 48 48 H 1.08003 * 120.26943 * 180.02562 * 27 26 25 49 49 H 1.07997 * 120.34112 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0414 1.4419 0.0000 4 6 2.0413 -0.7239 -1.2496 5 7 3.5046 -0.8292 -1.1695 6 6 4.2935 -0.3795 -2.1944 7 1 5.3005 -0.0447 -1.9938 8 6 3.7990 -0.3539 -3.4913 9 7 4.3574 0.4252 -4.3932 10 14 2.3409 -1.4250 -3.9562 11 1 1.0850 -0.6498 -3.7922 12 1 2.4750 -1.8569 -5.3706 13 1 2.3037 -2.6199 -3.0752 14 6 4.1052 -1.4268 0.0309 15 6 3.5708 -0.6951 1.2661 16 6 2.0408 -0.7231 1.2484 17 1 1.6967 -1.7573 1.2352 18 7 1.5266 -0.0530 2.4453 19 6 1.3972 -0.7385 3.5984 20 8 1.7082 -1.9150 3.6455 21 6 0.8835 -0.0698 4.7929 22 6 0.4804 1.2848 4.9004 23 6 0.0735 1.4930 6.1656 24 7 0.2004 0.3349 6.8855 25 6 -0.0873 0.0467 8.1905 26 6 0.1182 -1.1924 8.6854 27 6 0.6258 -2.2096 7.8631 28 6 0.9111 -1.9372 6.5580 29 6 0.6911 -0.6434 6.0624 30 1 -0.3634 0.5126 0.8907 31 1 -0.3633 0.5150 -0.8892 32 1 -0.3634 -1.0277 -0.0005 33 1 3.1314 1.4409 -0.0005 34 1 1.6774 1.9566 -0.8893 35 1 1.6797 1.9557 0.8906 36 1 1.7638 -0.1580 -2.1389 37 1 1.6054 -1.7216 -1.3005 38 1 4.0120 0.4428 -5.2995 39 1 5.1895 -1.3247 -0.0137 40 1 3.8396 -2.4824 0.0880 41 1 3.9159 0.3388 1.2541 42 1 3.9334 -1.1892 2.1674 43 1 1.2791 0.8842 2.4079 44 1 0.4974 2.0188 4.1082 45 1 -0.2932 2.4312 6.5551 46 1 -0.4785 0.8207 8.8344 47 1 -0.1097 -1.4019 9.7200 48 1 0.7891 -3.2004 8.2607 49 1 1.3028 -2.7094 5.9125 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000940881417.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:39:57 Heat of formation + Delta-G solvation = 44.457558 kcal Electronic energy + Delta-G solvation = -30335.729447 eV Core-core repulsion = 26456.578021 eV Total energy + Delta-G solvation = -3879.151426 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -43.21176 -41.25481 -39.42701 -37.48428 -36.32224 -34.32431 -34.00922 -33.83753 -31.89987 -30.82350 -29.04937 -28.20360 -27.74044 -26.80842 -24.84027 -24.51797 -23.43795 -22.38170 -22.18539 -20.99427 -20.00861 -19.13498 -18.53293 -17.55539 -17.25015 -17.00520 -16.68515 -16.53967 -16.30969 -16.08012 -15.70852 -15.47666 -15.25545 -15.11098 -14.94759 -14.75827 -14.41996 -14.17380 -13.99565 -13.72046 -13.61181 -13.20764 -13.01631 -12.85205 -12.80973 -12.62998 -12.51445 -12.39077 -12.29759 -12.25594 -12.06365 -11.82037 -11.54487 -11.42653 -11.34863 -11.17428 -10.91237 -10.63288 -9.94033 -9.62948 -8.92929 -8.33337 -8.14750 -5.45684 -0.22184 0.27406 1.28185 1.37577 1.41005 1.49517 1.68248 2.37541 2.41382 2.41999 2.76123 3.06079 3.32935 3.60270 3.63721 3.86148 3.90749 3.95890 3.96756 4.03251 4.11422 4.28215 4.29346 4.31786 4.45269 4.52648 4.57993 4.67808 4.76361 4.79740 4.83466 4.85897 4.88692 4.95213 4.96651 5.00619 5.04686 5.11960 5.20527 5.25792 5.31855 5.33283 5.35252 5.38900 5.60715 5.64212 5.71638 5.87735 5.88549 6.14556 6.32635 6.75517 6.91575 7.43273 7.62798 8.04550 9.05029 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.025913 B = 0.002644 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.297657 B =10586.791975 C =10880.611759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.080 4.080 3 C -0.124 4.124 4 C 0.135 3.865 5 N -0.612 5.612 6 C -0.240 4.240 7 H 0.055 0.945 8 C -0.028 4.028 9 N -0.953 5.953 10 Si 0.935 3.065 11 H -0.271 1.271 12 H -0.312 1.312 13 H -0.269 1.269 14 C 0.148 3.852 15 C -0.131 4.131 16 C 0.177 3.823 17 H 0.061 0.939 18 N -0.704 5.704 19 C 0.586 3.414 20 O -0.599 6.599 21 C -0.281 4.281 22 C -0.112 4.112 23 C -0.059 4.059 24 N -0.342 5.342 25 C 0.049 3.951 26 C -0.147 4.147 27 C -0.098 4.098 28 C -0.128 4.128 29 C 0.094 3.906 30 H 0.077 0.923 31 H 0.060 0.940 32 H 0.048 0.952 33 H 0.048 0.952 34 H 0.046 0.954 35 H 0.074 0.926 36 H 0.058 0.942 37 H 0.022 0.978 38 H 0.261 0.739 39 H 0.060 0.940 40 H 0.025 0.975 41 H 0.069 0.931 42 H 0.059 0.941 43 H 0.408 0.592 44 H 0.173 0.827 45 H 0.213 0.787 46 H 0.207 0.793 47 H 0.188 0.812 48 H 0.159 0.841 49 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.510 3.404 30.521 33.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.082 4.082 3 C -0.181 4.181 4 C 0.009 3.991 5 N -0.336 5.336 6 C -0.369 4.369 7 H 0.073 0.927 8 C -0.223 4.223 9 N -0.600 5.600 10 Si 0.765 3.235 11 H -0.197 1.197 12 H -0.241 1.241 13 H -0.194 1.194 14 C 0.022 3.978 15 C -0.171 4.171 16 C 0.072 3.928 17 H 0.079 0.921 18 N -0.355 5.355 19 C 0.377 3.623 20 O -0.482 6.482 21 C -0.291 4.291 22 C -0.133 4.133 23 C -0.183 4.183 24 N -0.006 5.006 25 C -0.071 4.071 26 C -0.166 4.166 27 C -0.120 4.120 28 C -0.147 4.147 29 C -0.017 4.017 30 H 0.096 0.904 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.093 0.907 36 H 0.076 0.924 37 H 0.040 0.960 38 H 0.070 0.930 39 H 0.078 0.922 40 H 0.043 0.957 41 H 0.088 0.912 42 H 0.078 0.922 43 H 0.246 0.754 44 H 0.190 0.810 45 H 0.230 0.770 46 H 0.224 0.776 47 H 0.205 0.795 48 H 0.176 0.824 49 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -14.355 2.757 30.601 33.913 hybrid contribution -0.124 -0.426 -1.322 1.394 sum -14.479 2.331 29.279 32.747 Atomic orbital electron populations 1.21802 0.92808 1.01924 1.02777 1.21192 0.96349 0.96835 0.93868 1.21698 1.01330 0.93749 1.01333 1.21437 0.83704 0.96998 0.96931 1.44425 1.01306 1.70322 1.17558 1.18818 0.97713 1.34189 0.86190 0.92702 1.25778 1.00887 0.99939 0.95722 1.69947 1.45600 1.39953 1.04462 0.86084 0.80745 0.81032 0.75670 1.19707 1.24053 1.19411 1.20986 0.97089 0.94406 0.85282 1.22264 0.95669 1.01500 0.97647 1.20553 0.92936 0.95893 0.83381 0.92123 1.45725 1.66101 1.14689 1.08975 1.17426 0.76507 0.85401 0.82917 1.90734 1.53824 1.17906 1.85749 1.19358 1.20259 0.96723 0.92748 1.21349 0.99893 0.94314 0.97710 1.22302 1.13557 0.90732 0.91672 1.41823 1.40126 1.09910 1.08715 1.22569 1.01241 1.00607 0.82685 1.21300 1.01399 0.91119 1.02809 1.21553 0.96603 1.01586 0.92217 1.20840 1.02200 0.94181 0.97499 1.18809 1.01964 0.90317 0.90569 0.90391 0.92114 0.93238 0.93245 0.93529 0.90720 0.92385 0.95974 0.92996 0.92155 0.95729 0.91203 0.92208 0.75432 0.80973 0.77016 0.77607 0.79503 0.82353 0.85334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.80 8.31 71.98 0.60 -3.20 16 2 C -0.08 -2.71 0.56 -52.10 -0.03 -2.74 16 3 C -0.12 -3.99 7.83 71.98 0.56 -3.42 16 4 C 0.13 5.86 2.89 86.36 0.25 6.11 16 5 N -0.61 -29.49 2.21 -699.10 -1.54 -31.04 16 6 C -0.24 -13.68 10.03 84.03 0.84 -12.83 16 7 H 0.06 3.41 8.06 -2.91 -0.02 3.39 16 8 C -0.03 -1.67 5.23 84.86 0.44 -1.23 16 9 N -0.95 -60.04 13.97 21.65 0.30 -59.74 16 10 Si 0.94 47.49 24.34 68.60 1.67 49.16 16 11 H -0.27 -12.83 6.62 99.48 0.66 -12.17 16 12 H -0.31 -16.09 7.11 99.48 0.71 -15.38 16 13 H -0.27 -13.48 6.64 99.48 0.66 -12.82 16 14 C 0.15 6.23 6.52 86.36 0.56 6.79 16 15 C -0.13 -4.73 5.31 30.67 0.16 -4.57 16 16 C 0.18 6.00 1.57 45.02 0.07 6.07 16 17 H 0.06 2.34 7.57 -2.39 -0.02 2.33 16 18 N -0.70 -19.86 4.28 -446.77 -1.91 -21.77 16 19 C 0.59 18.73 7.74 86.31 0.67 19.40 16 20 O -0.60 -23.67 15.32 -4.60 -0.07 -23.74 16 21 C -0.28 -7.39 6.20 -19.76 -0.12 -7.51 16 22 C -0.11 -2.00 10.27 22.28 0.23 -1.77 16 23 C -0.06 -0.80 11.53 83.04 0.96 0.16 16 24 N -0.34 -5.63 2.92 -346.28 -1.01 -6.64 16 25 C 0.05 0.45 10.89 83.19 0.91 1.35 16 26 C -0.15 -1.22 9.98 22.03 0.22 -1.00 16 27 C -0.10 -1.40 10.09 22.33 0.23 -1.17 16 28 C -0.13 -2.97 9.72 22.32 0.22 -2.76 16 29 C 0.09 2.30 6.70 39.43 0.26 2.56 16 30 H 0.08 1.78 7.36 -2.39 -0.02 1.76 16 31 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.05 1.86 5.97 -2.39 -0.01 1.85 16 34 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 35 H 0.07 1.78 6.58 -2.39 -0.02 1.76 16 36 H 0.06 2.75 4.50 -2.39 -0.01 2.73 16 37 H 0.02 0.99 7.07 -2.39 -0.02 0.97 16 38 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 39 H 0.06 2.55 7.93 -2.39 -0.02 2.53 16 40 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.07 2.50 6.33 -2.39 -0.02 2.48 16 42 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 43 H 0.41 9.14 5.63 -92.71 -0.52 8.62 16 44 H 0.17 2.13 7.53 -2.91 -0.02 2.11 16 45 H 0.21 0.99 8.06 -2.91 -0.02 0.97 16 46 H 0.21 -0.03 8.06 -2.91 -0.02 -0.06 16 47 H 0.19 0.03 8.06 -2.91 -0.02 0.01 16 48 H 0.16 1.44 8.06 -2.91 -0.02 1.41 16 49 H 0.13 3.56 7.07 -2.91 -0.02 3.54 16 Total: -1.00 -79.68 377.59 4.81 -74.87 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: 0.35 Total: 18.67 kcal Atomic # 6 Polarization: -6.81 SS G_CDS: 7.03 Total: 0.22 kcal Atomic # 7 Polarization: -115.03 SS G_CDS: -4.17 Total: -119.19 kcal Atomic # 8 Polarization: -23.67 SS G_CDS: -0.07 Total: -23.74 kcal Atomic # 14 Polarization: 47.49 SS G_CDS: 1.67 Total: 49.16 kcal Total: -79.68 4.81 -74.87 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000940881417.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.331 kcal (2) G-P(sol) polarization free energy of solvation -79.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds