Wall clock time and date at job start Wed Apr 1 2020 00:15:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35738 * 120.33608 * 2 1 4 4 C 1.40823 * 119.72135 * 179.73196 * 3 2 1 5 5 C 1.34542 * 120.58360 * 0.24642 * 4 3 2 6 6 N 1.37436 * 120.74261 * 0.02562 * 5 4 3 7 7 C 1.35127 * 131.28422 * 179.97438 * 6 5 4 8 8 C 1.38058 * 108.76700 * 180.02562 * 7 6 5 9 9 C 1.47504 * 126.36928 * 180.02562 * 8 7 6 10 10 O 1.21601 * 120.00073 * 179.97438 * 9 8 7 11 11 N 1.34778 * 120.00084 * 359.97438 * 9 8 7 12 12 C 1.46498 * 119.99841 * 179.97438 * 11 9 8 13 13 H 1.09004 * 109.46197 * 35.02578 * 12 11 9 14 14 C 1.53042 * 109.45997 * 275.06459 * 12 11 9 15 15 C 1.53188 * 109.31378 * 301.34935 * 14 12 11 16 16 N 1.46926 * 108.77295 * 305.36224 * 15 14 12 17 17 C 1.36936 * 120.63092 * 233.62938 * 16 15 14 18 18 H 1.08005 * 120.00187 * 27.65991 * 17 16 15 19 19 C 1.38815 * 120.00310 * 207.66617 * 17 16 15 20 20 N 1.31615 * 119.99911 * 17.36898 * 19 17 16 21 21 Si 1.86804 * 119.99917 * 197.37613 * 19 17 16 22 22 H 1.48493 * 109.47329 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47022 * 119.99566 * 21 19 17 24 24 H 1.48501 * 109.46871 * 239.99216 * 21 19 17 25 25 C 1.46923 * 118.74121 * 53.61069 * 16 15 14 26 26 C 1.53039 * 109.45832 * 155.00102 * 12 11 9 27 27 H 1.08997 * 109.49687 * 178.60574 * 26 12 11 28 28 C 1.52998 * 109.49411 * 298.66784 * 26 12 11 29 29 C 1.41197 * 107.25808 * 359.97438 * 8 7 6 30 30 C 1.37944 * 119.80856 * 359.97438 * 6 5 4 31 31 H 1.09002 * 109.47642 * 89.99478 * 1 2 3 32 32 H 1.09000 * 109.47107 * 209.99901 * 1 2 3 33 33 H 1.09003 * 109.46896 * 329.99853 * 1 2 3 34 34 H 1.08001 * 120.13971 * 0.02562 * 3 2 1 35 35 H 1.08001 * 119.71104 * 180.28094 * 4 3 2 36 36 H 1.08000 * 119.63250 * 180.02562 * 5 4 3 37 37 H 1.07992 * 125.61739 * 0.02562 * 7 6 5 38 38 H 0.96994 * 119.99665 * 359.97438 * 11 9 8 39 39 H 1.09007 * 109.49736 * 61.29948 * 14 12 11 40 40 H 1.09000 * 109.49621 * 181.39418 * 14 12 11 41 41 H 1.09006 * 109.58607 * 185.57777 * 15 14 12 42 42 H 1.08994 * 109.58972 * 65.15234 * 15 14 12 43 43 H 0.96999 * 119.99723 * 180.02562 * 20 19 17 44 44 H 1.08994 * 109.58877 * 186.60179 * 25 16 15 45 45 H 1.09003 * 109.70090 * 66.24542 * 25 16 15 46 46 H 1.08996 * 109.47537 * 60.00528 * 28 26 12 47 47 H 1.09008 * 109.46828 * 180.02562 * 28 26 12 48 48 H 1.08997 * 109.47482 * 299.99861 * 28 26 12 49 49 H 1.08002 * 126.56637 * 180.02562 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1925 1.1715 0.0000 4 6 3.6007 1.1564 0.0057 5 6 4.2728 -0.0091 0.0062 6 7 3.6004 -1.2078 0.0006 7 6 4.0499 -2.4821 -0.0006 8 6 2.9649 -3.3358 -0.0076 9 6 3.0119 -4.8100 -0.0106 10 8 1.9787 -5.4513 -0.0165 11 7 4.2000 -5.4464 -0.0068 12 6 4.2466 -6.9107 -0.0092 13 1 3.4194 -7.2994 -0.6032 14 6 4.1295 -7.4268 1.4267 15 6 5.2738 -6.8512 2.2669 16 7 6.5493 -7.1726 1.6122 17 6 7.5476 -7.8066 2.3026 18 1 7.3034 -8.4579 3.1289 19 6 8.8735 -7.6122 1.9406 20 7 9.2060 -6.5866 1.1857 21 14 10.1859 -8.8064 2.5247 22 1 9.5575 -9.8656 3.3542 23 1 10.8496 -9.4260 1.3496 24 1 11.1940 -8.0766 3.3348 25 6 6.7331 -6.8014 0.2026 26 6 5.5724 -7.3775 -0.6144 27 1 5.6183 -8.4663 -0.5939 28 6 5.6734 -6.8894 -2.0609 29 6 1.8019 -2.5350 -0.0102 30 6 2.2211 -1.2203 -0.0050 31 1 -0.3634 0.0001 -1.0276 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3633 0.8900 0.5139 34 1 1.6603 2.1113 0.0004 35 1 4.1460 2.0887 0.0103 36 1 5.3527 -0.0028 0.0110 37 1 5.0870 -2.7832 0.0033 38 1 5.0240 -4.9349 -0.0025 39 1 3.1747 -7.1137 1.8492 40 1 4.1890 -8.5152 1.4280 41 1 5.2532 -7.2923 3.2635 42 1 5.1639 -5.7694 2.3416 43 1 10.1325 -6.4510 0.9325 44 1 7.6753 -7.2096 -0.1629 45 1 6.7437 -5.7156 0.1070 46 1 5.6287 -5.8005 -2.0810 47 1 6.6177 -7.2225 -2.4917 48 1 4.8458 -7.2978 -2.6409 49 1 0.7801 -2.8846 -0.0152 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000944136948.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:15:26 Heat of formation + Delta-G solvation = 51.104771 kcal Electronic energy + Delta-G solvation = -30001.597064 eV Core-core repulsion = 26122.733884 eV Total energy + Delta-G solvation = -3878.863181 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -42.32822 -39.63881 -37.60594 -36.64751 -34.28388 -34.13050 -32.21000 -31.80740 -30.55533 -29.51532 -28.44878 -27.09460 -25.92411 -25.31609 -23.77134 -22.13573 -22.05672 -21.51477 -20.91866 -19.73112 -18.52299 -17.87431 -16.99402 -16.78436 -16.08146 -15.66717 -15.40130 -15.04436 -14.82633 -14.54124 -14.30792 -13.95764 -13.72744 -13.61290 -13.47836 -13.30061 -13.20384 -12.97222 -12.95134 -12.57970 -12.22584 -11.99326 -11.89669 -11.69558 -11.44573 -11.27053 -11.19387 -11.00865 -10.91408 -10.72219 -10.35035 -10.26826 -10.11660 -9.94300 -9.78214 -9.58464 -9.40035 -8.71220 -8.53300 -8.39261 -7.46919 -6.69444 -5.82786 -3.23685 0.59488 1.22090 2.17460 2.55165 3.29271 3.34881 3.43462 3.45773 3.63397 3.79491 4.29546 4.47362 4.49113 4.62944 4.74634 4.84935 5.04384 5.25378 5.26474 5.30626 5.32835 5.34935 5.44187 5.46092 5.61034 5.66062 5.71959 5.74726 5.81186 5.89239 5.94700 6.11739 6.17717 6.19671 6.21952 6.25606 6.38522 6.49369 6.59270 6.60745 6.64580 6.69321 6.74633 6.82549 6.96861 7.08231 7.13375 7.28857 7.57905 7.77641 7.99016 8.41673 8.64515 9.18220 9.81660 10.38171 11.25663 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.015426 B = 0.002822 C = 0.002580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.704708 B = 9920.912420 C =10852.035074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.039 4.039 3 C -0.145 4.145 4 C -0.133 4.133 5 C 0.036 3.964 6 N -0.337 5.337 7 C -0.005 4.005 8 C -0.163 4.163 9 C 0.584 3.416 10 O -0.549 6.549 11 N -0.707 5.707 12 C 0.161 3.839 13 H 0.074 0.926 14 C -0.146 4.146 15 C 0.148 3.852 16 N -0.592 5.592 17 C -0.248 4.248 18 H 0.066 0.934 19 C 0.001 3.999 20 N -0.904 5.904 21 Si 0.901 3.099 22 H -0.278 1.278 23 H -0.289 1.289 24 H -0.291 1.291 25 C 0.179 3.821 26 C -0.128 4.128 27 H 0.078 0.922 28 C -0.139 4.139 29 C -0.134 4.134 30 C 0.023 3.977 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.131 0.869 35 H 0.144 0.856 36 H 0.162 0.838 37 H 0.178 0.822 38 H 0.401 0.599 39 H 0.057 0.943 40 H 0.067 0.933 41 H 0.052 0.948 42 H 0.017 0.983 43 H 0.252 0.748 44 H 0.090 0.910 45 H 0.014 0.986 46 H 0.049 0.951 47 H 0.054 0.946 48 H 0.044 0.956 49 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.416 14.891 -5.478 20.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.040 4.040 3 C -0.165 4.165 4 C -0.153 4.153 5 C -0.082 4.082 6 N 0.000 5.000 7 C -0.139 4.139 8 C -0.170 4.170 9 C 0.371 3.629 10 O -0.429 6.429 11 N -0.358 5.358 12 C 0.057 3.943 13 H 0.092 0.908 14 C -0.186 4.186 15 C 0.022 3.978 16 N -0.315 5.315 17 C -0.378 4.378 18 H 0.084 0.916 19 C -0.197 4.197 20 N -0.549 5.549 21 Si 0.731 3.269 22 H -0.203 1.203 23 H -0.216 1.216 24 H -0.218 1.218 25 C 0.053 3.947 26 C -0.149 4.149 27 H 0.096 0.904 28 C -0.197 4.197 29 C -0.158 4.158 30 C -0.081 4.081 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.149 0.851 35 H 0.162 0.838 36 H 0.180 0.820 37 H 0.195 0.805 38 H 0.237 0.763 39 H 0.075 0.925 40 H 0.085 0.915 41 H 0.070 0.930 42 H 0.035 0.965 43 H 0.062 0.938 44 H 0.109 0.891 45 H 0.031 0.969 46 H 0.068 0.932 47 H 0.073 0.927 48 H 0.064 0.936 49 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -12.750 14.608 -5.503 20.155 hybrid contribution 1.432 -0.212 0.311 1.480 sum -11.318 14.396 -5.192 19.034 Atomic orbital electron populations 1.20730 0.89708 1.03409 1.02874 1.19357 0.96402 0.90145 0.98132 1.20780 0.93684 0.97777 1.04265 1.20670 0.94783 0.97024 1.02843 1.21702 0.98549 0.83177 1.04728 1.41251 1.07157 1.05350 1.46236 1.22252 0.99769 0.80510 1.11373 1.19744 0.93155 0.93020 1.11127 1.17385 0.83817 0.85588 0.76110 1.90731 1.33446 1.67466 1.51211 1.46016 1.07875 1.08026 1.73860 1.20881 0.98101 0.78584 0.96719 0.90841 1.22382 0.99410 1.00810 0.95985 1.20860 0.85895 0.96342 0.94735 1.44072 1.11970 1.68611 1.06805 1.19241 0.85347 1.19377 1.13820 0.91648 1.25004 0.97208 0.97034 1.00440 1.70022 1.16940 1.27130 1.40783 0.86245 0.81811 0.80860 0.78004 1.20275 1.21583 1.21821 1.20769 0.95528 0.95477 0.82927 1.22130 0.96441 1.01395 0.94887 0.90376 1.21717 1.00934 1.00783 0.96221 1.21037 0.98685 0.88751 1.07349 1.18627 0.81829 0.94941 1.12688 0.90531 0.90760 0.90982 0.85092 0.83795 0.82039 0.80491 0.76324 0.92471 0.91479 0.92985 0.96488 0.93772 0.89142 0.96858 0.93214 0.92686 0.93646 0.82942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.81 9.91 36.00 0.36 -0.46 16 2 C -0.04 -0.40 5.90 -104.32 -0.62 -1.01 16 3 C -0.14 -1.23 9.72 -39.50 -0.38 -1.61 16 4 C -0.13 -1.07 9.97 -39.91 -0.40 -1.47 16 5 C 0.04 0.35 10.89 -16.35 -0.18 0.17 16 6 N -0.34 -4.14 2.92 -60.42 -0.18 -4.31 16 7 C -0.01 -0.07 11.09 -16.17 -0.18 -0.25 16 8 C -0.16 -2.47 6.12 -105.06 -0.64 -3.11 16 9 C 0.58 10.10 7.78 -12.48 -0.10 10.01 16 10 O -0.55 -11.05 16.58 5.28 0.09 -10.96 16 11 N -0.71 -11.74 3.59 -54.81 -0.20 -11.94 16 12 C 0.16 2.84 2.21 -67.89 -0.15 2.69 16 13 H 0.07 1.32 7.58 -51.93 -0.39 0.93 16 14 C -0.15 -2.71 5.77 -26.61 -0.15 -2.86 16 15 C 0.15 3.11 6.26 -3.71 -0.02 3.09 16 16 N -0.59 -14.22 2.99 -172.33 -0.52 -14.74 16 17 C -0.25 -6.63 9.58 -15.06 -0.14 -6.78 16 18 H 0.07 1.75 7.89 -52.48 -0.41 1.33 16 19 C 0.00 0.04 4.91 -17.43 -0.09 -0.05 16 20 N -0.90 -25.11 11.19 55.49 0.62 -24.49 16 21 Si 0.90 21.30 29.59 -169.99 -5.03 16.27 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 25 C 0.18 3.94 4.30 -3.71 -0.02 3.93 16 26 C -0.13 -2.31 2.67 -90.50 -0.24 -2.56 16 27 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 28 C -0.14 -2.16 9.05 37.16 0.34 -1.82 16 29 C -0.13 -1.89 10.27 -38.55 -0.40 -2.28 16 30 C 0.02 0.29 6.60 -84.00 -0.55 -0.26 16 31 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.57 7.71 -51.93 -0.40 0.17 16 33 H 0.07 0.40 8.09 -51.93 -0.42 -0.02 16 34 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 35 H 0.14 0.73 8.06 -52.49 -0.42 0.30 16 36 H 0.16 1.11 8.06 -52.49 -0.42 0.69 16 37 H 0.18 2.02 7.42 -52.49 -0.39 1.63 16 38 H 0.40 6.45 5.63 -40.82 -0.23 6.22 16 39 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 41 H 0.05 1.10 7.93 -51.93 -0.41 0.69 16 42 H 0.02 0.37 7.74 -51.93 -0.40 -0.04 16 43 H 0.25 6.81 8.31 -40.82 -0.34 6.47 16 44 H 0.09 2.28 6.03 -51.93 -0.31 1.97 16 45 H 0.01 0.30 6.65 -51.93 -0.35 -0.04 16 46 H 0.05 0.74 7.54 -51.93 -0.39 0.35 16 47 H 0.05 0.84 8.14 -51.92 -0.42 0.42 16 48 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 49 H 0.15 2.01 7.94 -52.49 -0.42 1.60 16 LS Contribution 390.65 15.07 5.89 5.89 Total: -1.00 -31.83 390.65 -10.36 -42.19 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -7.47 Total: 6.74 kcal Atomic # 6 Polarization: -1.07 SS G_CDS: -3.57 Total: -4.63 kcal Atomic # 7 Polarization: -55.21 SS G_CDS: -0.27 Total: -55.48 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: 0.09 Total: -10.96 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.03 Total: 16.27 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -31.83 -10.36 -42.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000944136948.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.293 kcal (2) G-P(sol) polarization free energy of solvation -31.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds