Wall clock time and date at job start Wed Apr 1 2020 00:15:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35738 * 120.33608 * 2 1 4 4 C 1.40823 * 119.72135 * 179.73196 * 3 2 1 5 5 C 1.34542 * 120.58360 * 0.24642 * 4 3 2 6 6 N 1.37436 * 120.74261 * 0.02562 * 5 4 3 7 7 C 1.35127 * 131.28422 * 179.97438 * 6 5 4 8 8 C 1.38058 * 108.76700 * 180.02562 * 7 6 5 9 9 C 1.47504 * 126.36928 * 180.02562 * 8 7 6 10 10 O 1.21601 * 120.00073 * 179.97438 * 9 8 7 11 11 N 1.34778 * 120.00084 * 359.97438 * 9 8 7 12 12 C 1.46498 * 119.99841 * 179.97438 * 11 9 8 13 13 H 1.09004 * 109.46197 * 35.02578 * 12 11 9 14 14 C 1.53042 * 109.45997 * 275.06459 * 12 11 9 15 15 C 1.53188 * 109.31378 * 301.34935 * 14 12 11 16 16 N 1.46926 * 108.77295 * 305.36224 * 15 14 12 17 17 C 1.36936 * 120.63092 * 233.62938 * 16 15 14 18 18 H 1.08005 * 120.00187 * 27.65991 * 17 16 15 19 19 C 1.38815 * 120.00310 * 207.66617 * 17 16 15 20 20 N 1.31615 * 119.99911 * 17.36898 * 19 17 16 21 21 Si 1.86804 * 119.99917 * 197.37613 * 19 17 16 22 22 H 1.48493 * 109.47329 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47022 * 119.99566 * 21 19 17 24 24 H 1.48501 * 109.46871 * 239.99216 * 21 19 17 25 25 C 1.46923 * 118.74121 * 53.61069 * 16 15 14 26 26 C 1.53039 * 109.45832 * 155.00102 * 12 11 9 27 27 H 1.08997 * 109.49687 * 178.60574 * 26 12 11 28 28 C 1.52998 * 109.49411 * 298.66784 * 26 12 11 29 29 C 1.41197 * 107.25808 * 359.97438 * 8 7 6 30 30 C 1.37944 * 119.80856 * 359.97438 * 6 5 4 31 31 H 1.09002 * 109.47642 * 89.99478 * 1 2 3 32 32 H 1.09000 * 109.47107 * 209.99901 * 1 2 3 33 33 H 1.09003 * 109.46896 * 329.99853 * 1 2 3 34 34 H 1.08001 * 120.13971 * 0.02562 * 3 2 1 35 35 H 1.08001 * 119.71104 * 180.28094 * 4 3 2 36 36 H 1.08000 * 119.63250 * 180.02562 * 5 4 3 37 37 H 1.07992 * 125.61739 * 0.02562 * 7 6 5 38 38 H 0.96994 * 119.99665 * 359.97438 * 11 9 8 39 39 H 1.09007 * 109.49736 * 61.29948 * 14 12 11 40 40 H 1.09000 * 109.49621 * 181.39418 * 14 12 11 41 41 H 1.09006 * 109.58607 * 185.57777 * 15 14 12 42 42 H 1.08994 * 109.58972 * 65.15234 * 15 14 12 43 43 H 0.96999 * 119.99723 * 180.02562 * 20 19 17 44 44 H 1.08994 * 109.58877 * 186.60179 * 25 16 15 45 45 H 1.09003 * 109.70090 * 66.24542 * 25 16 15 46 46 H 1.08996 * 109.47537 * 60.00528 * 28 26 12 47 47 H 1.09008 * 109.46828 * 180.02562 * 28 26 12 48 48 H 1.08997 * 109.47482 * 299.99861 * 28 26 12 49 49 H 1.08002 * 126.56637 * 180.02562 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1925 1.1715 0.0000 4 6 3.6007 1.1564 0.0057 5 6 4.2728 -0.0091 0.0062 6 7 3.6004 -1.2078 0.0006 7 6 4.0499 -2.4821 -0.0006 8 6 2.9649 -3.3358 -0.0076 9 6 3.0119 -4.8100 -0.0106 10 8 1.9787 -5.4513 -0.0165 11 7 4.2000 -5.4464 -0.0068 12 6 4.2466 -6.9107 -0.0092 13 1 3.4194 -7.2994 -0.6032 14 6 4.1295 -7.4268 1.4267 15 6 5.2738 -6.8512 2.2669 16 7 6.5493 -7.1726 1.6122 17 6 7.5476 -7.8066 2.3026 18 1 7.3034 -8.4579 3.1289 19 6 8.8735 -7.6122 1.9406 20 7 9.2060 -6.5866 1.1857 21 14 10.1859 -8.8064 2.5247 22 1 9.5575 -9.8656 3.3542 23 1 10.8496 -9.4260 1.3496 24 1 11.1940 -8.0766 3.3348 25 6 6.7331 -6.8014 0.2026 26 6 5.5724 -7.3775 -0.6144 27 1 5.6183 -8.4663 -0.5939 28 6 5.6734 -6.8894 -2.0609 29 6 1.8019 -2.5350 -0.0102 30 6 2.2211 -1.2203 -0.0050 31 1 -0.3634 0.0001 -1.0276 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3633 0.8900 0.5139 34 1 1.6603 2.1113 0.0004 35 1 4.1460 2.0887 0.0103 36 1 5.3527 -0.0028 0.0110 37 1 5.0870 -2.7832 0.0033 38 1 5.0240 -4.9349 -0.0025 39 1 3.1747 -7.1137 1.8492 40 1 4.1890 -8.5152 1.4280 41 1 5.2532 -7.2923 3.2635 42 1 5.1639 -5.7694 2.3416 43 1 10.1325 -6.4510 0.9325 44 1 7.6753 -7.2096 -0.1629 45 1 6.7437 -5.7156 0.1070 46 1 5.6287 -5.8005 -2.0810 47 1 6.6177 -7.2225 -2.4917 48 1 4.8458 -7.2978 -2.6409 49 1 0.7801 -2.8846 -0.0152 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000944136948.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:15:25 Heat of formation + Delta-G solvation = 35.251554 kcal Electronic energy + Delta-G solvation = -30002.284511 eV Core-core repulsion = 26122.733884 eV Total energy + Delta-G solvation = -3879.550628 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -43.23197 -41.07090 -39.08006 -37.53806 -35.90864 -35.02491 -33.73543 -33.52032 -31.75606 -30.91256 -29.40802 -27.79576 -27.51896 -27.05328 -24.98662 -23.66556 -22.95092 -22.65357 -22.39403 -20.95698 -20.08724 -18.92056 -18.59196 -17.99526 -16.94782 -16.85538 -16.65451 -16.45773 -16.17771 -15.93767 -15.64879 -15.27870 -15.10606 -14.89922 -14.68753 -14.57778 -14.40349 -14.12234 -14.08246 -13.68395 -13.57948 -13.14617 -13.06637 -12.93596 -12.76646 -12.58914 -12.54307 -12.47014 -12.34647 -12.15476 -12.04477 -11.78915 -11.69246 -11.45833 -11.12820 -11.09031 -11.00318 -10.53802 -10.01030 -9.53270 -8.65296 -8.31533 -7.86388 -5.29796 -0.19693 0.36402 1.09644 1.46334 1.49692 1.58966 1.69119 2.31237 2.49622 2.52228 2.57222 3.28255 3.51707 3.67013 3.74271 3.80250 3.90125 4.01228 4.07015 4.10226 4.17470 4.20443 4.35530 4.42356 4.49649 4.59686 4.68602 4.74320 4.76299 4.81123 4.83179 4.87624 4.93900 4.97905 5.05484 5.10595 5.14472 5.17369 5.24343 5.30272 5.35790 5.36804 5.46882 5.52693 5.63312 5.67253 5.68489 5.77682 5.89763 6.27645 6.40951 6.63641 7.17216 7.29067 7.86760 8.38755 9.19416 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.015426 B = 0.002822 C = 0.002580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.704708 B = 9920.912420 C =10852.035074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.064 4.064 3 C -0.133 4.133 4 C -0.122 4.122 5 C 0.012 3.988 6 N -0.338 5.338 7 C -0.010 4.010 8 C -0.189 4.189 9 C 0.586 3.414 10 O -0.583 6.583 11 N -0.701 5.701 12 C 0.167 3.833 13 H 0.077 0.923 14 C -0.135 4.135 15 C 0.151 3.849 16 N -0.607 5.607 17 C -0.261 4.261 18 H 0.061 0.939 19 C -0.044 4.044 20 N -0.927 5.927 21 Si 0.961 3.039 22 H -0.272 1.272 23 H -0.289 1.289 24 H -0.293 1.293 25 C 0.189 3.811 26 C -0.115 4.115 27 H 0.072 0.928 28 C -0.132 4.132 29 C -0.162 4.162 30 C 0.022 3.978 31 H 0.083 0.917 32 H 0.063 0.937 33 H 0.094 0.906 34 H 0.164 0.836 35 H 0.182 0.818 36 H 0.185 0.815 37 H 0.189 0.811 38 H 0.403 0.597 39 H 0.059 0.941 40 H 0.069 0.931 41 H 0.047 0.953 42 H 0.014 0.986 43 H 0.250 0.750 44 H 0.058 0.942 45 H 0.008 0.992 46 H 0.054 0.946 47 H 0.056 0.944 48 H 0.062 0.938 49 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.618 17.130 -5.920 22.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.065 4.065 3 C -0.153 4.153 4 C -0.142 4.142 5 C -0.105 4.105 6 N -0.001 5.001 7 C -0.145 4.145 8 C -0.196 4.196 9 C 0.375 3.625 10 O -0.465 6.465 11 N -0.351 5.351 12 C 0.062 3.938 13 H 0.095 0.905 14 C -0.175 4.175 15 C 0.025 3.975 16 N -0.330 5.330 17 C -0.392 4.392 18 H 0.078 0.922 19 C -0.240 4.240 20 N -0.573 5.573 21 Si 0.790 3.210 22 H -0.197 1.197 23 H -0.216 1.216 24 H -0.220 1.220 25 C 0.063 3.937 26 C -0.136 4.136 27 H 0.091 0.909 28 C -0.190 4.190 29 C -0.186 4.186 30 C -0.083 4.083 31 H 0.102 0.898 32 H 0.082 0.918 33 H 0.112 0.888 34 H 0.182 0.818 35 H 0.199 0.801 36 H 0.202 0.798 37 H 0.206 0.794 38 H 0.240 0.760 39 H 0.077 0.923 40 H 0.088 0.912 41 H 0.065 0.935 42 H 0.032 0.968 43 H 0.059 0.941 44 H 0.077 0.923 45 H 0.026 0.974 46 H 0.073 0.927 47 H 0.075 0.925 48 H 0.081 0.919 49 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -12.955 16.857 -5.947 22.076 hybrid contribution 1.470 -0.697 0.482 1.697 sum -11.485 16.160 -5.465 20.565 Atomic orbital electron populations 1.20770 0.88169 1.04024 1.03531 1.19720 0.97743 0.89676 0.99389 1.21291 0.94164 0.98431 1.01374 1.21228 0.94931 0.97880 1.00141 1.22338 1.00001 0.82600 1.05598 1.41442 1.07263 1.05864 1.45516 1.22299 0.99726 0.80928 1.11517 1.19600 0.94516 0.91916 1.13603 1.17679 0.83221 0.86513 0.75072 1.90696 1.34437 1.68417 1.52972 1.45919 1.07970 1.07527 1.73700 1.20763 0.97746 0.79266 0.95975 0.90535 1.22251 0.98239 1.00800 0.96216 1.20873 0.85597 0.96161 0.94863 1.44282 1.12310 1.68692 1.07692 1.19471 0.86306 1.19447 1.13944 0.92159 1.25652 0.98858 0.98410 1.01053 1.70141 1.17024 1.28318 1.41809 0.85305 0.79277 0.79020 0.77402 1.19658 1.21565 1.22028 1.20597 0.95557 0.95004 0.82499 1.21938 0.94875 1.00830 0.95925 0.90913 1.21657 1.01771 1.01144 0.94403 1.21074 0.98410 0.89686 1.09434 1.18965 0.82385 0.95370 1.11611 0.89810 0.91765 0.88762 0.81846 0.80105 0.79758 0.79371 0.75987 0.92278 0.91243 0.93478 0.96845 0.94069 0.92325 0.97426 0.92704 0.92490 0.91923 0.83345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.42 9.91 71.23 0.71 -0.71 16 2 C -0.06 -1.17 5.90 -19.67 -0.12 -1.29 16 3 C -0.13 -1.76 9.72 22.32 0.22 -1.54 16 4 C -0.12 -1.49 9.97 22.06 0.22 -1.27 16 5 C 0.01 0.19 10.89 82.97 0.90 1.10 16 6 N -0.34 -8.02 2.92 -345.07 -1.01 -9.02 16 7 C -0.01 -0.28 11.09 84.14 0.93 0.66 16 8 C -0.19 -5.90 6.12 -20.15 -0.12 -6.03 16 9 C 0.59 20.81 7.78 86.69 0.67 21.48 16 10 O -0.58 -24.13 16.58 -4.03 -0.07 -24.20 16 11 N -0.70 -23.52 3.59 -445.59 -1.60 -25.12 16 12 C 0.17 5.88 2.21 45.02 0.10 5.98 16 13 H 0.08 2.72 7.58 -2.38 -0.02 2.70 16 14 C -0.14 -5.04 5.77 30.67 0.18 -4.86 16 15 C 0.15 6.43 6.26 86.36 0.54 6.97 16 16 N -0.61 -29.57 2.99 -699.11 -2.09 -31.67 16 17 C -0.26 -14.15 9.58 84.03 0.81 -13.34 16 18 H 0.06 3.26 7.89 -2.91 -0.02 3.23 16 19 C -0.04 -2.38 4.91 84.86 0.42 -1.96 16 20 N -0.93 -52.19 11.19 21.65 0.24 -51.95 16 21 Si 0.96 44.11 29.59 68.60 2.03 46.14 16 22 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 23 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 24 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 25 C 0.19 8.45 4.30 86.36 0.37 8.82 16 26 C -0.12 -4.15 2.67 -10.72 -0.03 -4.18 16 27 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 28 C -0.13 -3.98 9.05 71.98 0.65 -3.33 16 29 C -0.16 -4.74 10.27 22.94 0.24 -4.50 16 30 C 0.02 0.55 6.60 38.90 0.26 0.81 16 31 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.06 0.97 7.71 -2.39 -0.02 0.95 16 33 H 0.09 0.79 8.09 -2.39 -0.02 0.77 16 34 H 0.16 1.11 8.06 -2.91 -0.02 1.08 16 35 H 0.18 0.86 8.06 -2.91 -0.02 0.83 16 36 H 0.19 2.05 8.06 -2.91 -0.02 2.03 16 37 H 0.19 4.32 7.42 -2.91 -0.02 4.29 16 38 H 0.40 13.14 5.63 -92.71 -0.52 12.62 16 39 H 0.06 2.19 8.14 -2.38 -0.02 2.17 16 40 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 41 H 0.05 2.02 7.93 -2.38 -0.02 2.00 16 42 H 0.01 0.59 7.74 -2.39 -0.02 0.57 16 43 H 0.25 13.65 8.31 -92.71 -0.77 12.88 16 44 H 0.06 3.02 6.03 -2.39 -0.01 3.00 16 45 H 0.01 0.35 6.65 -2.39 -0.02 0.34 16 46 H 0.05 1.59 7.54 -2.39 -0.02 1.58 16 47 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 48 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 49 H 0.15 4.22 7.94 -2.91 -0.02 4.20 16 Total: -1.00 -69.77 390.65 4.88 -64.89 By element: Atomic # 1 Polarization: 27.70 SS G_CDS: 0.43 Total: 28.13 kcal Atomic # 6 Polarization: -4.15 SS G_CDS: 6.94 Total: 2.79 kcal Atomic # 7 Polarization: -113.30 SS G_CDS: -4.46 Total: -117.76 kcal Atomic # 8 Polarization: -24.13 SS G_CDS: -0.07 Total: -24.20 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -69.77 4.88 -64.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000944136948.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.142 kcal (2) G-P(sol) polarization free energy of solvation -69.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds