Wall clock time and date at job start Wed Apr 1 2020 00:15:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35747 * 120.33238 * 2 1 4 4 C 1.40822 * 119.72193 * 179.97438 * 3 2 1 5 5 C 1.34539 * 120.58462 * 0.02562 * 4 3 2 6 6 N 1.37442 * 120.73584 * 0.02562 * 5 4 3 7 7 C 1.35134 * 131.27551 * 180.02562 * 6 5 4 8 8 C 1.38062 * 108.76696 * 179.27990 * 7 6 5 9 9 C 1.47498 * 126.37456 * 180.02562 * 8 7 6 10 10 O 1.21598 * 120.00233 * 180.61882 * 9 8 7 11 11 N 1.34779 * 119.99631 * 0.62531 * 9 8 7 12 12 C 1.46507 * 119.99480 * 180.02562 * 11 9 8 13 13 H 1.08996 * 109.45701 * 324.99368 * 12 11 9 14 14 C 1.53035 * 109.45855 * 84.97171 * 12 11 9 15 15 C 1.53194 * 109.30935 * 181.39697 * 14 12 11 16 16 N 1.46929 * 108.76490 * 305.34170 * 15 14 12 17 17 C 1.36933 * 120.63351 * 233.63887 * 16 15 14 18 18 H 1.07998 * 120.00502 * 151.80652 * 17 16 15 19 19 C 1.38813 * 119.99860 * 331.80605 * 17 16 15 20 20 N 1.31626 * 120.00449 * 343.08999 * 19 17 16 21 21 Si 1.86801 * 120.00203 * 163.09196 * 19 17 16 22 22 H 1.48493 * 109.47235 * 59.99664 * 21 19 17 23 23 H 1.48496 * 109.47253 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47051 * 300.00012 * 21 19 17 25 25 C 1.46927 * 118.73792 * 53.61830 * 16 15 14 26 26 C 1.53042 * 109.45417 * 205.02515 * 12 11 9 27 27 H 1.08999 * 109.49894 * 298.56159 * 26 12 11 28 28 C 1.52997 * 109.50060 * 58.66459 * 26 12 11 29 29 C 1.41202 * 107.25288 * 0.58414 * 8 7 6 30 30 C 1.37943 * 119.81693 * 359.69344 * 6 5 4 31 31 H 1.09004 * 109.47188 * 90.00340 * 1 2 3 32 32 H 1.09003 * 109.47703 * 330.00024 * 1 2 3 33 33 H 1.09000 * 109.47386 * 210.00225 * 1 2 3 34 34 H 1.08000 * 120.13928 * 359.95419 * 3 2 1 35 35 H 1.08001 * 119.70691 * 180.02562 * 4 3 2 36 36 H 1.07993 * 119.63241 * 179.97438 * 5 4 3 37 37 H 1.08004 * 125.61669 * 359.96262 * 7 6 5 38 38 H 0.96993 * 120.00300 * 359.97438 * 11 9 8 39 39 H 1.08996 * 109.49689 * 301.33073 * 14 12 11 40 40 H 1.09000 * 109.49962 * 61.43641 * 14 12 11 41 41 H 1.09001 * 109.58660 * 185.56308 * 15 14 12 42 42 H 1.08997 * 109.60149 * 65.12971 * 15 14 12 43 43 H 0.96988 * 120.00293 * 179.97438 * 20 19 17 44 44 H 1.09004 * 109.58710 * 186.60187 * 25 16 15 45 45 H 1.09004 * 109.58601 * 66.17899 * 25 16 15 46 46 H 1.09002 * 109.47218 * 59.99522 * 28 26 12 47 47 H 1.08999 * 109.47311 * 180.02562 * 28 26 12 48 48 H 1.09000 * 109.46826 * 299.99587 * 28 26 12 49 49 H 1.07997 * 126.56911 * 179.47185 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1925 1.1716 0.0000 4 6 3.6006 1.1566 0.0005 5 6 4.2728 -0.0088 0.0006 6 7 3.6004 -1.2075 -0.0005 7 6 4.0500 -2.4819 -0.0003 8 6 2.9652 -3.3356 0.0147 9 6 3.0122 -4.8099 0.0206 10 8 1.9791 -5.4512 0.0227 11 7 4.2004 -5.4461 0.0237 12 6 4.2471 -6.9104 0.0289 13 1 3.4169 -7.2980 0.6193 14 6 4.1380 -7.4291 -1.4067 15 6 4.1520 -8.9609 -1.3943 16 7 5.3510 -9.4168 -0.6778 17 6 6.2196 -10.2995 -1.2621 18 1 7.2637 -10.2925 -0.9861 19 6 5.7581 -11.2033 -2.2092 20 7 4.4692 -11.4501 -2.3104 21 14 6.9664 -12.0695 -3.3403 22 1 7.9257 -12.8598 -2.5278 23 1 6.2262 -12.9764 -4.2540 24 1 7.7077 -11.0605 -4.1386 25 6 5.6005 -8.9072 0.6775 26 6 5.5698 -7.3760 0.6420 27 1 6.3998 -7.0095 0.0379 28 6 5.6932 -6.8296 2.0657 29 6 1.8021 -2.5350 0.0102 30 6 2.2210 -1.2202 0.0048 31 1 -0.3634 -0.0001 -1.0277 32 1 -0.3634 0.8900 0.5138 33 1 -0.3634 -0.8899 0.5139 34 1 1.6602 2.1114 -0.0007 35 1 4.1458 2.0890 0.0010 36 1 5.3527 -0.0024 0.0006 37 1 5.0873 -2.7829 0.0003 38 1 5.0245 -4.9346 0.0217 39 1 3.2066 -7.0776 -1.8507 40 1 4.9816 -7.0621 -1.9913 41 1 4.1741 -9.3344 -2.4181 42 1 3.2607 -9.3307 -0.8874 43 1 4.1467 -12.0813 -2.9724 44 1 6.5783 -9.2453 1.0208 45 1 4.8273 -9.2726 1.3534 46 1 4.8637 -7.1978 2.6694 47 1 6.6356 -7.1611 2.5017 48 1 5.6685 -5.7402 2.0401 49 1 0.7803 -2.8847 0.0109 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000944136950.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:15:31 Heat of formation + Delta-G solvation = 50.136113 kcal Electronic energy + Delta-G solvation = -29306.662837 eV Core-core repulsion = 25427.757652 eV Total energy + Delta-G solvation = -3878.905185 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.46884 -39.56505 -37.63671 -36.77038 -34.49381 -34.34016 -32.61927 -31.19370 -30.74445 -29.72810 -28.59778 -27.21615 -25.86984 -25.26165 -23.64176 -22.24720 -22.11798 -21.38213 -20.90393 -19.86470 -19.08764 -17.94806 -17.06851 -16.68977 -16.23141 -15.79532 -15.58554 -15.41032 -14.75643 -14.49208 -14.39166 -13.98124 -13.83899 -13.61895 -13.55901 -13.40166 -13.21112 -13.03118 -12.73951 -12.60871 -12.34925 -12.04174 -12.00890 -11.81576 -11.47328 -11.37900 -11.25959 -11.01912 -10.76148 -10.62636 -10.39591 -10.28957 -10.20630 -9.97808 -9.78277 -9.73571 -9.40974 -8.81475 -8.56174 -8.35712 -7.60853 -6.64286 -5.74993 -3.18245 0.46132 1.07498 2.05045 2.39785 3.16149 3.40060 3.46450 3.47061 3.49476 3.68642 4.14268 4.36167 4.46561 4.51834 4.62062 4.70252 4.86976 5.12756 5.14493 5.19857 5.27178 5.31369 5.35702 5.44346 5.54828 5.55330 5.63354 5.67201 5.69488 5.80975 5.97078 6.02718 6.05794 6.11078 6.15720 6.30235 6.32879 6.45665 6.49967 6.51716 6.59758 6.68252 6.72292 6.84862 6.96802 7.00867 7.03765 7.42865 7.72280 7.82458 7.85014 8.48498 8.55076 9.24401 9.87816 10.44828 11.33444 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.021796 B = 0.002196 C = 0.002162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.350946 B =12749.398161 C =12949.499295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.036 4.036 3 C -0.146 4.146 4 C -0.130 4.130 5 C 0.032 3.968 6 N -0.337 5.337 7 C -0.013 4.013 8 C -0.161 4.161 9 C 0.582 3.418 10 O -0.537 6.537 11 N -0.718 5.718 12 C 0.158 3.842 13 H 0.083 0.917 14 C -0.147 4.147 15 C 0.174 3.826 16 N -0.593 5.593 17 C -0.255 4.255 18 H 0.065 0.935 19 C 0.003 3.997 20 N -0.901 5.901 21 Si 0.902 3.098 22 H -0.283 1.283 23 H -0.291 1.291 24 H -0.284 1.284 25 C 0.155 3.845 26 C -0.114 4.114 27 H 0.070 0.930 28 C -0.142 4.142 29 C -0.132 4.132 30 C 0.024 3.976 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.132 0.868 35 H 0.145 0.855 36 H 0.161 0.839 37 H 0.175 0.825 38 H 0.391 0.609 39 H 0.054 0.946 40 H 0.054 0.946 41 H 0.089 0.911 42 H 0.021 0.979 43 H 0.255 0.745 44 H 0.057 0.943 45 H 0.020 0.980 46 H 0.052 0.948 47 H 0.053 0.947 48 H 0.046 0.954 49 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.702 27.568 6.345 28.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.037 4.037 3 C -0.167 4.167 4 C -0.150 4.150 5 C -0.086 4.086 6 N 0.000 5.000 7 C -0.146 4.146 8 C -0.168 4.168 9 C 0.368 3.632 10 O -0.415 6.415 11 N -0.368 5.368 12 C 0.055 3.945 13 H 0.101 0.899 14 C -0.188 4.188 15 C 0.047 3.953 16 N -0.315 5.315 17 C -0.384 4.384 18 H 0.083 0.917 19 C -0.196 4.196 20 N -0.545 5.545 21 Si 0.732 3.268 22 H -0.209 1.209 23 H -0.216 1.216 24 H -0.211 1.211 25 C 0.028 3.972 26 C -0.135 4.135 27 H 0.088 0.912 28 C -0.200 4.200 29 C -0.157 4.157 30 C -0.080 4.080 31 H 0.096 0.904 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.150 0.850 35 H 0.162 0.838 36 H 0.178 0.822 37 H 0.193 0.807 38 H 0.225 0.775 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.107 0.893 42 H 0.039 0.961 43 H 0.065 0.935 44 H 0.076 0.924 45 H 0.038 0.962 46 H 0.072 0.928 47 H 0.072 0.928 48 H 0.065 0.935 49 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -2.320 27.090 6.229 27.893 hybrid contribution 1.216 -0.089 -0.687 1.399 sum -1.105 27.001 5.542 27.586 Atomic orbital electron populations 1.20752 0.89585 1.03505 1.03052 1.19391 0.96513 0.90113 0.97701 1.20795 0.93670 0.97852 1.04345 1.20682 0.94828 0.97030 1.02441 1.21642 0.98369 0.83209 1.05409 1.41244 1.07185 1.05306 1.46246 1.22126 0.99470 0.80574 1.12449 1.19798 0.93199 0.93069 1.10781 1.17399 0.83941 0.85504 0.76352 1.90786 1.33287 1.67337 1.50045 1.46136 1.07416 1.08360 1.74857 1.21052 0.98437 0.77082 0.97913 0.89928 1.22577 1.00517 1.00835 0.94845 1.20764 0.88160 0.87002 0.99343 1.44093 1.26146 1.50302 1.10942 1.19114 0.89578 1.10105 1.19615 0.91749 1.25062 0.95819 0.97079 1.01646 1.70025 1.12309 1.36220 1.35928 0.86376 0.80444 0.79118 0.80848 1.20902 1.21650 1.21094 1.20895 0.98949 0.89137 0.88258 1.21967 0.96400 0.99838 0.95325 0.91159 1.21769 1.01479 0.99858 0.96850 1.21100 0.98887 0.88748 1.06931 1.18635 0.81781 0.94966 1.12583 0.90374 0.90894 0.90674 0.85001 0.83780 0.82189 0.80743 0.77506 0.92714 0.92731 0.89305 0.96098 0.93528 0.92441 0.96163 0.92846 0.92825 0.93512 0.82787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.74 9.92 36.00 0.36 -0.38 16 2 C -0.04 -0.32 5.90 -104.32 -0.62 -0.94 16 3 C -0.15 -1.05 9.72 -39.50 -0.38 -1.44 16 4 C -0.13 -0.82 9.97 -39.91 -0.40 -1.22 16 5 C 0.03 0.23 10.89 -16.34 -0.18 0.06 16 6 N -0.34 -3.45 2.92 -60.42 -0.18 -3.63 16 7 C -0.01 -0.13 11.09 -16.16 -0.18 -0.31 16 8 C -0.16 -2.18 6.12 -105.06 -0.64 -2.83 16 9 C 0.58 9.51 7.78 -12.49 -0.10 9.41 16 10 O -0.54 -10.97 16.58 5.28 0.09 -10.88 16 11 N -0.72 -10.56 4.35 -54.82 -0.24 -10.80 16 12 C 0.16 2.82 1.88 -67.89 -0.13 2.69 16 13 H 0.08 1.67 7.57 -51.93 -0.39 1.28 16 14 C -0.15 -3.02 5.65 -26.61 -0.15 -3.17 16 15 C 0.17 4.29 5.30 -3.71 -0.02 4.27 16 16 N -0.59 -14.91 2.99 -172.31 -0.52 -15.42 16 17 C -0.25 -6.98 9.58 -15.06 -0.14 -7.13 16 18 H 0.06 1.72 7.88 -52.49 -0.41 1.31 16 19 C 0.00 0.08 4.92 -17.43 -0.09 -0.01 16 20 N -0.90 -26.54 11.20 55.49 0.62 -25.92 16 21 Si 0.90 21.80 29.59 -169.99 -5.03 16.77 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 24 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 25 C 0.15 3.21 5.80 -3.71 -0.02 3.19 16 26 C -0.11 -1.91 2.46 -90.50 -0.22 -2.13 16 27 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 28 C -0.14 -1.91 9.03 37.16 0.34 -1.58 16 29 C -0.13 -1.73 10.27 -38.55 -0.40 -2.12 16 30 C 0.02 0.28 6.60 -84.01 -0.55 -0.28 16 31 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.35 8.09 -51.93 -0.42 -0.07 16 33 H 0.07 0.52 7.69 -51.93 -0.40 0.12 16 34 H 0.13 0.64 8.06 -52.49 -0.42 0.21 16 35 H 0.14 0.48 8.06 -52.49 -0.42 0.06 16 36 H 0.16 0.68 8.06 -52.49 -0.42 0.26 16 37 H 0.18 1.28 7.42 -52.48 -0.39 0.89 16 38 H 0.39 4.54 7.21 -40.82 -0.29 4.25 16 39 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.09 2.45 6.06 -51.93 -0.31 2.13 16 42 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 44 H 0.06 1.15 7.93 -51.93 -0.41 0.74 16 45 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 46 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 48 H 0.05 0.55 7.36 -51.93 -0.38 0.17 16 49 H 0.15 1.94 7.93 -52.49 -0.42 1.53 16 LS Contribution 394.57 15.07 5.95 5.95 Total: -1.00 -34.09 394.57 -10.45 -44.54 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -7.62 Total: 3.31 kcal Atomic # 6 Polarization: -0.39 SS G_CDS: -3.52 Total: -3.91 kcal Atomic # 7 Polarization: -55.46 SS G_CDS: -0.31 Total: -55.77 kcal Atomic # 8 Polarization: -10.97 SS G_CDS: 0.09 Total: -10.88 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.03 Total: 16.77 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -34.09 -10.45 -44.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000944136950.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.677 kcal (2) G-P(sol) polarization free energy of solvation -34.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds