Wall clock time and date at job start Wed Apr 1 2020 00:15:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35747 * 120.33238 * 2 1 4 4 C 1.40822 * 119.72193 * 179.97438 * 3 2 1 5 5 C 1.34539 * 120.58462 * 0.02562 * 4 3 2 6 6 N 1.37442 * 120.73584 * 0.02562 * 5 4 3 7 7 C 1.35134 * 131.27551 * 180.02562 * 6 5 4 8 8 C 1.38062 * 108.76696 * 179.27990 * 7 6 5 9 9 C 1.47498 * 126.37456 * 180.02562 * 8 7 6 10 10 O 1.21598 * 120.00233 * 180.61882 * 9 8 7 11 11 N 1.34779 * 119.99631 * 0.62531 * 9 8 7 12 12 C 1.46507 * 119.99480 * 180.02562 * 11 9 8 13 13 H 1.08996 * 109.45701 * 324.99368 * 12 11 9 14 14 C 1.53035 * 109.45855 * 84.97171 * 12 11 9 15 15 C 1.53194 * 109.30935 * 181.39697 * 14 12 11 16 16 N 1.46929 * 108.76490 * 305.34170 * 15 14 12 17 17 C 1.36933 * 120.63351 * 233.63887 * 16 15 14 18 18 H 1.07998 * 120.00502 * 151.80652 * 17 16 15 19 19 C 1.38813 * 119.99860 * 331.80605 * 17 16 15 20 20 N 1.31626 * 120.00449 * 343.08999 * 19 17 16 21 21 Si 1.86801 * 120.00203 * 163.09196 * 19 17 16 22 22 H 1.48493 * 109.47235 * 59.99664 * 21 19 17 23 23 H 1.48496 * 109.47253 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47051 * 300.00012 * 21 19 17 25 25 C 1.46927 * 118.73792 * 53.61830 * 16 15 14 26 26 C 1.53042 * 109.45417 * 205.02515 * 12 11 9 27 27 H 1.08999 * 109.49894 * 298.56159 * 26 12 11 28 28 C 1.52997 * 109.50060 * 58.66459 * 26 12 11 29 29 C 1.41202 * 107.25288 * 0.58414 * 8 7 6 30 30 C 1.37943 * 119.81693 * 359.69344 * 6 5 4 31 31 H 1.09004 * 109.47188 * 90.00340 * 1 2 3 32 32 H 1.09003 * 109.47703 * 330.00024 * 1 2 3 33 33 H 1.09000 * 109.47386 * 210.00225 * 1 2 3 34 34 H 1.08000 * 120.13928 * 359.95419 * 3 2 1 35 35 H 1.08001 * 119.70691 * 180.02562 * 4 3 2 36 36 H 1.07993 * 119.63241 * 179.97438 * 5 4 3 37 37 H 1.08004 * 125.61669 * 359.96262 * 7 6 5 38 38 H 0.96993 * 120.00300 * 359.97438 * 11 9 8 39 39 H 1.08996 * 109.49689 * 301.33073 * 14 12 11 40 40 H 1.09000 * 109.49962 * 61.43641 * 14 12 11 41 41 H 1.09001 * 109.58660 * 185.56308 * 15 14 12 42 42 H 1.08997 * 109.60149 * 65.12971 * 15 14 12 43 43 H 0.96988 * 120.00293 * 179.97438 * 20 19 17 44 44 H 1.09004 * 109.58710 * 186.60187 * 25 16 15 45 45 H 1.09004 * 109.58601 * 66.17899 * 25 16 15 46 46 H 1.09002 * 109.47218 * 59.99522 * 28 26 12 47 47 H 1.08999 * 109.47311 * 180.02562 * 28 26 12 48 48 H 1.09000 * 109.46826 * 299.99587 * 28 26 12 49 49 H 1.07997 * 126.56911 * 179.47185 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1925 1.1716 0.0000 4 6 3.6006 1.1566 0.0005 5 6 4.2728 -0.0088 0.0006 6 7 3.6004 -1.2075 -0.0005 7 6 4.0500 -2.4819 -0.0003 8 6 2.9652 -3.3356 0.0147 9 6 3.0122 -4.8099 0.0206 10 8 1.9791 -5.4512 0.0227 11 7 4.2004 -5.4461 0.0237 12 6 4.2471 -6.9104 0.0289 13 1 3.4169 -7.2980 0.6193 14 6 4.1380 -7.4291 -1.4067 15 6 4.1520 -8.9609 -1.3943 16 7 5.3510 -9.4168 -0.6778 17 6 6.2196 -10.2995 -1.2621 18 1 7.2637 -10.2925 -0.9861 19 6 5.7581 -11.2033 -2.2092 20 7 4.4692 -11.4501 -2.3104 21 14 6.9664 -12.0695 -3.3403 22 1 7.9257 -12.8598 -2.5278 23 1 6.2262 -12.9764 -4.2540 24 1 7.7077 -11.0605 -4.1386 25 6 5.6005 -8.9072 0.6775 26 6 5.5698 -7.3760 0.6420 27 1 6.3998 -7.0095 0.0379 28 6 5.6932 -6.8296 2.0657 29 6 1.8021 -2.5350 0.0102 30 6 2.2210 -1.2202 0.0048 31 1 -0.3634 -0.0001 -1.0277 32 1 -0.3634 0.8900 0.5138 33 1 -0.3634 -0.8899 0.5139 34 1 1.6602 2.1114 -0.0007 35 1 4.1458 2.0890 0.0010 36 1 5.3527 -0.0024 0.0006 37 1 5.0873 -2.7829 0.0003 38 1 5.0245 -4.9346 0.0217 39 1 3.2066 -7.0776 -1.8507 40 1 4.9816 -7.0621 -1.9913 41 1 4.1741 -9.3344 -2.4181 42 1 3.2607 -9.3307 -0.8874 43 1 4.1467 -12.0813 -2.9724 44 1 6.5783 -9.2453 1.0208 45 1 4.8273 -9.2726 1.3534 46 1 4.8637 -7.1978 2.6694 47 1 6.6356 -7.1611 2.5017 48 1 5.6685 -5.7402 2.0401 49 1 0.7803 -2.8847 0.0109 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000944136950.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:15:30 Heat of formation + Delta-G solvation = 30.620238 kcal Electronic energy + Delta-G solvation = -29307.509109 eV Core-core repulsion = 25427.757652 eV Total energy + Delta-G solvation = -3879.751457 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.22285 -40.93840 -39.13728 -37.54188 -36.17881 -35.02480 -34.19866 -32.92968 -31.99775 -31.01783 -29.44978 -27.79749 -27.40995 -26.96112 -24.93343 -23.44775 -22.95658 -22.63301 -22.32151 -21.26402 -20.44337 -18.87764 -18.56101 -17.94037 -17.26953 -16.77349 -16.66038 -16.59281 -16.18441 -15.76157 -15.59370 -15.46090 -15.07290 -14.90109 -14.64788 -14.53400 -14.39109 -14.13274 -14.09392 -13.68695 -13.57915 -13.15439 -13.03897 -12.99084 -12.71702 -12.58627 -12.55310 -12.34335 -12.32592 -12.08291 -12.07853 -12.00544 -11.66715 -11.56744 -11.31004 -11.10024 -10.97585 -10.55660 -10.03904 -9.52361 -8.70821 -8.30559 -7.86682 -5.33691 -0.19005 0.37627 1.09548 1.47560 1.50571 1.57326 1.69823 2.23876 2.49823 2.51947 2.56531 3.28760 3.51065 3.63178 3.74110 3.77043 3.88822 4.02260 4.05084 4.11047 4.17108 4.19464 4.38269 4.42200 4.49133 4.61312 4.72737 4.73685 4.76733 4.78579 4.84028 4.86761 4.91083 4.95788 5.03670 5.12092 5.13894 5.16376 5.25329 5.30096 5.35840 5.39411 5.47968 5.52340 5.56900 5.63980 5.66031 5.69675 5.88983 6.31265 6.38440 6.65901 7.13081 7.31936 7.83993 8.37678 9.20294 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.021796 B = 0.002196 C = 0.002162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.350946 B =12749.398161 C =12949.499295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.069 4.069 3 C -0.132 4.132 4 C -0.127 4.127 5 C 0.019 3.981 6 N -0.339 5.339 7 C 0.002 3.998 8 C -0.192 4.192 9 C 0.582 3.418 10 O -0.591 6.591 11 N -0.700 5.700 12 C 0.170 3.830 13 H 0.053 0.947 14 C -0.132 4.132 15 C 0.183 3.817 16 N -0.609 5.609 17 C -0.262 4.262 18 H 0.075 0.925 19 C -0.056 4.056 20 N -0.939 5.939 21 Si 0.971 3.029 22 H -0.272 1.272 23 H -0.298 1.298 24 H -0.276 1.276 25 C 0.149 3.851 26 C -0.098 4.098 27 H 0.083 0.917 28 C -0.134 4.134 29 C -0.171 4.171 30 C 0.022 3.978 31 H 0.079 0.921 32 H 0.094 0.906 33 H 0.061 0.939 34 H 0.160 0.840 35 H 0.183 0.817 36 H 0.197 0.803 37 H 0.212 0.788 38 H 0.412 0.588 39 H 0.042 0.958 40 H 0.063 0.937 41 H 0.056 0.944 42 H -0.013 1.013 43 H 0.249 0.751 44 H 0.068 0.932 45 H 0.008 0.992 46 H 0.043 0.957 47 H 0.072 0.928 48 H 0.072 0.928 49 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.642 31.790 7.002 32.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.070 4.070 3 C -0.152 4.152 4 C -0.146 4.146 5 C -0.097 4.097 6 N -0.001 5.001 7 C -0.132 4.132 8 C -0.200 4.200 9 C 0.371 3.629 10 O -0.472 6.472 11 N -0.351 5.351 12 C 0.066 3.934 13 H 0.072 0.928 14 C -0.172 4.172 15 C 0.057 3.943 16 N -0.332 5.332 17 C -0.392 4.392 18 H 0.092 0.908 19 C -0.251 4.251 20 N -0.585 5.585 21 Si 0.799 3.201 22 H -0.197 1.197 23 H -0.224 1.224 24 H -0.202 1.202 25 C 0.023 3.977 26 C -0.119 4.119 27 H 0.102 0.898 28 C -0.192 4.192 29 C -0.195 4.195 30 C -0.083 4.083 31 H 0.098 0.902 32 H 0.112 0.888 33 H 0.080 0.920 34 H 0.178 0.822 35 H 0.200 0.800 36 H 0.214 0.786 37 H 0.228 0.772 38 H 0.249 0.751 39 H 0.061 0.939 40 H 0.082 0.918 41 H 0.074 0.926 42 H 0.005 0.995 43 H 0.058 0.942 44 H 0.086 0.914 45 H 0.026 0.974 46 H 0.062 0.938 47 H 0.091 0.909 48 H 0.091 0.909 49 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 1.081 31.370 6.917 32.141 hybrid contribution 0.147 -1.215 -0.847 1.489 sum 1.228 30.154 6.071 30.784 Atomic orbital electron populations 1.20765 0.88747 1.03880 1.03306 1.19672 0.97491 0.89972 0.99851 1.21285 0.94543 0.98164 1.01185 1.21241 0.94616 0.98298 1.00458 1.22406 1.00186 0.82188 1.04943 1.41480 1.06893 1.06207 1.45559 1.22460 0.99984 0.80264 1.10466 1.19528 0.94848 0.91415 1.14161 1.17850 0.83320 0.86763 0.74969 1.90755 1.35154 1.68739 1.52557 1.45777 1.08105 1.06845 1.74332 1.20665 0.98376 0.78953 0.95447 0.92840 1.22328 1.00214 0.97590 0.97084 1.20458 0.87181 0.89697 0.96992 1.44337 1.25651 1.50430 1.12760 1.19532 0.90346 1.09828 1.19449 0.90767 1.25909 0.97381 0.98361 1.03408 1.70210 1.14372 1.37267 1.36669 0.85290 0.78223 0.77941 0.78690 1.19749 1.22450 1.20194 1.21100 0.98908 0.91929 0.85769 1.21759 0.95633 0.96618 0.97859 0.89839 1.21717 1.02125 1.01316 0.94013 1.21073 0.98467 0.90184 1.09735 1.18840 0.82857 0.94951 1.11662 0.90199 0.88767 0.92047 0.82249 0.80015 0.78635 0.77163 0.75066 0.93888 0.91813 0.92574 0.99481 0.94187 0.91400 0.97415 0.93811 0.90901 0.90948 0.84421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.41 9.92 71.23 0.71 -0.70 16 2 C -0.07 -1.13 5.90 -19.67 -0.12 -1.25 16 3 C -0.13 -1.40 9.72 22.32 0.22 -1.19 16 4 C -0.13 -0.99 9.97 22.05 0.22 -0.77 16 5 C 0.02 0.20 10.89 82.97 0.90 1.10 16 6 N -0.34 -6.08 2.92 -345.06 -1.01 -7.08 16 7 C 0.00 0.04 11.09 84.14 0.93 0.98 16 8 C -0.19 -5.27 6.12 -20.15 -0.12 -5.39 16 9 C 0.58 19.62 7.78 86.68 0.67 20.29 16 10 O -0.59 -25.92 16.58 -4.02 -0.07 -25.98 16 11 N -0.70 -20.08 4.35 -445.60 -1.94 -22.02 16 12 C 0.17 6.14 1.88 45.02 0.08 6.22 16 13 H 0.05 2.28 7.57 -2.39 -0.02 2.26 16 14 C -0.13 -5.60 5.65 30.67 0.17 -5.43 16 15 C 0.18 9.61 5.30 86.36 0.46 10.07 16 16 N -0.61 -31.37 2.99 -699.07 -2.09 -33.46 16 17 C -0.26 -14.48 9.58 84.03 0.81 -13.67 16 18 H 0.07 3.90 7.88 -2.91 -0.02 3.87 16 19 C -0.06 -3.17 4.92 84.86 0.42 -2.75 16 20 N -0.94 -57.79 11.20 21.65 0.24 -57.55 16 21 Si 0.97 45.44 29.59 68.60 2.03 47.47 16 22 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 23 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 24 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 25 C 0.15 6.16 5.80 86.36 0.50 6.66 16 26 C -0.10 -3.13 2.46 -10.72 -0.03 -3.16 16 27 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 28 C -0.13 -3.25 9.03 71.98 0.65 -2.60 16 29 C -0.17 -4.72 10.27 22.94 0.24 -4.49 16 30 C 0.02 0.49 6.60 38.90 0.26 0.75 16 31 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 32 H 0.09 0.74 8.09 -2.39 -0.02 0.72 16 33 H 0.06 0.93 7.69 -2.39 -0.02 0.91 16 34 H 0.16 0.79 8.06 -2.91 -0.02 0.77 16 35 H 0.18 0.06 8.06 -2.91 -0.02 0.04 16 36 H 0.20 0.51 8.06 -2.91 -0.02 0.49 16 37 H 0.21 2.16 7.42 -2.91 -0.02 2.14 16 38 H 0.41 8.39 7.21 -92.71 -0.67 7.72 16 39 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 41 H 0.06 3.29 6.06 -2.39 -0.01 3.27 16 42 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 43 H 0.25 14.90 8.31 -92.72 -0.77 14.13 16 44 H 0.07 2.65 7.93 -2.38 -0.02 2.63 16 45 H 0.01 0.34 8.14 -2.38 -0.02 0.33 16 46 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 47 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 48 H 0.07 1.41 7.36 -2.39 -0.02 1.40 16 49 H 0.14 4.01 7.93 -2.91 -0.02 3.98 16 Total: -1.00 -80.61 394.57 4.42 -76.19 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: 0.28 Total: 17.76 kcal Atomic # 6 Polarization: -2.29 SS G_CDS: 6.97 Total: 4.68 kcal Atomic # 7 Polarization: -115.32 SS G_CDS: -4.80 Total: -120.11 kcal Atomic # 8 Polarization: -25.92 SS G_CDS: -0.07 Total: -25.98 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -80.61 4.42 -76.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000944136950.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.810 kcal (2) G-P(sol) polarization free energy of solvation -80.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds