Wall clock time and date at job start Wed Apr 1 2020 00:16:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35743 * 120.33214 * 2 1 4 4 C 1.40827 * 119.71726 * 179.97438 * 3 2 1 5 5 C 1.34547 * 120.58261 * 0.02562 * 4 3 2 6 6 N 1.37428 * 120.74526 * 359.97438 * 5 4 3 7 7 C 1.35134 * 131.29066 * 180.34095 * 6 5 4 8 8 C 1.38060 * 108.77131 * 180.12583 * 7 6 5 9 9 C 1.47495 * 126.37161 * 179.82779 * 8 7 6 10 10 O 1.21595 * 120.00119 * 179.68626 * 9 8 7 11 11 N 1.34781 * 120.00002 * 359.68833 * 9 8 7 12 12 C 1.46498 * 120.00195 * 179.97438 * 11 9 8 13 13 H 1.08999 * 109.49917 * 324.94059 * 12 11 9 14 14 C 1.53195 * 109.49234 * 85.00150 * 12 11 9 15 15 N 1.46917 * 108.77828 * 65.31890 * 14 12 11 16 16 C 1.36935 * 120.63313 * 233.58525 * 15 14 12 17 17 H 1.08003 * 120.00334 * 151.84309 * 16 15 14 18 18 C 1.38816 * 120.00109 * 331.84348 * 16 15 14 19 19 N 1.31624 * 119.99356 * 343.07479 * 18 16 15 20 20 Si 1.86793 * 120.00395 * 163.07501 * 18 16 15 21 21 H 1.48500 * 109.47341 * 59.99642 * 20 18 16 22 22 H 1.48504 * 109.47235 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.46651 * 299.99824 * 20 18 16 24 24 C 1.46934 * 118.73910 * 53.60508 * 15 14 12 25 25 C 1.53194 * 108.89214 * 306.32295 * 24 15 14 26 26 C 1.53042 * 109.50153 * 204.83823 * 12 11 9 27 27 H 1.08991 * 109.45872 * 181.41211 * 26 12 11 28 28 C 1.52999 * 109.45796 * 61.43341 * 26 12 11 29 29 C 1.41197 * 107.25269 * 359.56338 * 8 7 6 30 30 C 1.37945 * 119.80908 * 359.97438 * 6 5 4 31 31 H 1.08995 * 109.47066 * 270.01724 * 1 2 3 32 32 H 1.08993 * 109.46944 * 30.01836 * 1 2 3 33 33 H 1.09003 * 109.46889 * 150.02048 * 1 2 3 34 34 H 1.07994 * 120.14270 * 359.97438 * 3 2 1 35 35 H 1.07999 * 119.70516 * 180.02562 * 4 3 2 36 36 H 1.08006 * 119.62275 * 180.02562 * 5 4 3 37 37 H 1.08004 * 125.61065 * 359.97352 * 7 6 5 38 38 H 0.97007 * 120.00110 * 0.02562 * 11 9 8 39 39 H 1.09003 * 109.58933 * 305.52652 * 14 12 11 40 40 H 1.09007 * 109.58443 * 185.10331 * 14 12 11 41 41 H 0.96997 * 119.99488 * 180.02562 * 19 18 16 42 42 H 1.09003 * 109.58460 * 66.18260 * 24 15 14 43 43 H 1.09001 * 109.58650 * 186.46265 * 24 15 14 44 44 H 1.08996 * 109.49250 * 174.65763 * 25 24 15 45 45 H 1.09002 * 109.49602 * 294.75299 * 25 24 15 46 46 H 1.09000 * 109.46817 * 59.99939 * 28 26 12 47 47 H 1.08991 * 109.47274 * 179.97438 * 28 26 12 48 48 H 1.08995 * 109.47589 * 300.00425 * 28 26 12 49 49 H 1.08007 * 126.56185 * 180.26288 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1925 1.1716 0.0000 4 6 3.6007 1.1565 0.0005 5 6 4.2728 -0.0091 0.0006 6 7 3.6005 -1.2077 0.0006 7 6 4.0499 -2.4821 0.0066 8 6 2.9649 -3.3358 0.0006 9 6 3.0118 -4.8100 0.0006 10 8 1.9786 -5.4512 0.0006 11 7 4.1999 -5.4464 0.0005 12 6 4.2465 -6.9107 0.0011 13 1 3.4176 -7.3009 0.5916 14 6 4.1367 -7.4262 -1.4374 15 7 5.3268 -6.9986 -2.1851 16 6 5.2012 -6.3150 -3.3650 17 1 5.9746 -5.6283 -3.6762 18 6 4.0800 -6.5046 -4.1611 19 7 3.3101 -7.5557 -3.9738 20 14 3.6637 -5.2683 -5.4980 21 1 4.7846 -5.1930 -6.4691 22 1 2.4272 -5.6962 -6.2004 23 1 3.4478 -3.9322 -4.8866 24 6 6.6545 -7.3188 -1.6432 25 6 6.7396 -6.8040 -0.2028 26 6 5.5714 -7.3794 0.6069 27 1 5.6161 -8.4682 0.5841 28 6 5.6692 -6.8954 2.0550 29 6 1.8019 -2.5350 0.0007 30 6 2.2211 -1.2203 0.0011 31 1 -0.3633 0.0003 1.0276 32 1 -0.3633 0.8898 -0.5141 33 1 -0.3633 -0.8902 -0.5135 34 1 1.6603 2.1113 -0.0004 35 1 4.1459 2.0888 0.0010 36 1 5.3528 -0.0026 0.0014 37 1 5.0871 -2.7832 0.0125 38 1 5.0241 -4.9350 0.0009 39 1 3.2430 -7.0140 -1.9060 40 1 4.0800 -8.5148 -1.4321 41 1 2.5268 -7.6884 -4.5303 42 1 6.8031 -8.3986 -1.6547 43 1 7.4223 -6.8378 -2.2492 44 1 7.6842 -7.1189 0.2407 45 1 6.6815 -5.7155 -0.2015 46 1 4.8404 -7.3057 2.6320 47 1 6.6125 -7.2295 2.4869 48 1 5.6240 -5.8066 2.0781 49 1 0.7800 -2.8846 0.0007 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968541038.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:16:17 Heat of formation + Delta-G solvation = 53.564976 kcal Electronic energy + Delta-G solvation = -30613.737004 eV Core-core repulsion = 26734.980506 eV Total energy + Delta-G solvation = -3878.756498 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.18158 -39.37624 -37.50343 -36.49073 -34.14885 -34.03881 -32.69850 -30.99498 -30.48977 -29.21970 -28.24089 -27.21791 -26.97043 -24.20420 -23.57884 -22.09558 -21.95652 -21.40039 -21.02811 -19.61433 -18.60494 -17.75944 -16.95308 -16.49935 -16.04709 -15.51436 -15.22741 -14.97635 -14.77438 -14.25528 -14.02616 -13.92130 -13.69488 -13.52984 -13.39160 -13.22627 -13.20145 -12.86811 -12.80141 -12.50232 -12.08126 -11.91209 -11.75462 -11.58750 -11.54543 -11.33953 -11.16753 -11.00184 -10.85910 -10.66550 -10.47139 -10.19237 -10.13412 -9.87445 -9.64819 -9.44961 -9.27989 -8.49907 -8.39032 -8.17851 -7.33551 -6.58107 -5.70617 -3.13710 0.71683 1.34703 2.38835 2.67848 3.41411 3.42551 3.49825 3.50785 3.85615 4.12730 4.39019 4.55991 4.60395 4.70334 4.85765 4.99007 5.14581 5.24429 5.28476 5.36978 5.39406 5.44387 5.46873 5.48384 5.58554 5.61522 5.80448 5.85590 5.92138 5.95165 5.97165 6.02685 6.08061 6.18583 6.30328 6.34448 6.38091 6.41972 6.49053 6.61186 6.72597 6.78556 6.80259 6.88098 6.93794 7.08365 7.25994 7.47594 7.75127 7.87024 8.26289 8.53478 8.96882 9.28026 9.92286 10.47936 11.37248 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.010070 B = 0.004136 C = 0.003484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2779.785122 B = 6767.751914 C = 8034.829467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.036 4.036 3 C -0.149 4.149 4 C -0.134 4.134 5 C 0.035 3.965 6 N -0.338 5.338 7 C -0.009 4.009 8 C -0.152 4.152 9 C 0.584 3.416 10 O -0.545 6.545 11 N -0.694 5.694 12 C 0.127 3.873 13 H 0.076 0.924 14 C 0.160 3.840 15 N -0.586 5.586 16 C -0.254 4.254 17 H 0.061 0.939 18 C 0.010 3.990 19 N -0.897 5.897 20 Si 0.896 3.104 21 H -0.284 1.284 22 H -0.290 1.290 23 H -0.285 1.285 24 C 0.142 3.858 25 C -0.128 4.128 26 C -0.094 4.094 27 H 0.077 0.923 28 C -0.144 4.144 29 C -0.133 4.133 30 C 0.022 3.978 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.130 0.870 35 H 0.143 0.857 36 H 0.159 0.841 37 H 0.174 0.826 38 H 0.392 0.608 39 H 0.097 0.903 40 H 0.024 0.976 41 H 0.254 0.746 42 H 0.017 0.983 43 H 0.052 0.948 44 H 0.053 0.947 45 H 0.052 0.948 46 H 0.050 0.950 47 H 0.048 0.952 48 H 0.050 0.950 49 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.416 14.910 12.585 19.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.037 4.037 3 C -0.169 4.169 4 C -0.154 4.154 5 C -0.083 4.083 6 N -0.001 5.001 7 C -0.143 4.143 8 C -0.160 4.160 9 C 0.370 3.630 10 O -0.423 6.423 11 N -0.343 5.343 12 C 0.021 3.979 13 H 0.094 0.906 14 C 0.034 3.966 15 N -0.309 5.309 16 C -0.384 4.384 17 H 0.079 0.921 18 C -0.190 4.190 19 N -0.540 5.540 20 Si 0.726 3.274 21 H -0.211 1.211 22 H -0.216 1.216 23 H -0.211 1.211 24 C 0.016 3.984 25 C -0.168 4.168 26 C -0.113 4.113 27 H 0.095 0.905 28 C -0.201 4.201 29 C -0.157 4.157 30 C -0.082 4.082 31 H 0.095 0.905 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.148 0.852 35 H 0.160 0.840 36 H 0.177 0.823 37 H 0.191 0.809 38 H 0.226 0.774 39 H 0.115 0.885 40 H 0.042 0.958 41 H 0.064 0.936 42 H 0.035 0.965 43 H 0.070 0.930 44 H 0.072 0.928 45 H 0.071 0.929 46 H 0.069 0.931 47 H 0.067 0.933 48 H 0.069 0.931 49 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 1.744 14.517 12.459 19.210 hybrid contribution 0.392 0.926 -0.887 1.341 sum 2.136 15.444 11.572 19.416 Atomic orbital electron populations 1.20738 0.89754 1.03494 1.02820 1.19364 0.96398 0.90167 0.97741 1.20744 0.93664 0.97708 1.04804 1.20628 0.94796 0.96910 1.03110 1.21620 0.98314 0.83299 1.05075 1.41220 1.07149 1.05269 1.46483 1.22121 0.99508 0.80478 1.12165 1.19825 0.93034 0.93335 1.09798 1.17265 0.83952 0.85378 0.76357 1.90743 1.33399 1.67311 1.50855 1.45649 1.07272 1.07570 1.73852 1.21775 0.96258 0.79323 1.00533 0.90586 1.21207 0.92613 0.96034 0.86770 1.43951 0.98950 1.65516 1.22477 1.18995 1.05937 1.16878 0.96578 0.92090 1.24980 0.99882 0.96557 0.97557 1.69984 1.17221 1.25834 1.41003 0.86477 0.77565 0.81602 0.81766 1.21056 1.21595 1.21112 1.20921 0.89343 0.96677 0.91477 1.22131 0.96460 0.99937 0.98240 1.21364 0.95388 1.00624 0.93914 0.90458 1.21843 1.00821 1.01030 0.96431 1.21080 0.98864 0.88777 1.07014 1.18603 0.81822 0.94913 1.12861 0.90539 0.91015 0.90661 0.85192 0.83967 0.82326 0.80865 0.77357 0.88466 0.95771 0.93561 0.96489 0.92953 0.92822 0.92886 0.93078 0.93252 0.93076 0.82933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.03 9.91 36.01 0.36 -0.67 16 2 C -0.04 -0.42 5.91 -104.32 -0.62 -1.04 16 3 C -0.15 -1.47 9.72 -39.50 -0.38 -1.85 16 4 C -0.13 -1.22 9.97 -39.91 -0.40 -1.62 16 5 C 0.04 0.37 10.89 -16.35 -0.18 0.19 16 6 N -0.34 -4.65 2.92 -60.42 -0.18 -4.83 16 7 C -0.01 -0.14 11.09 -16.16 -0.18 -0.32 16 8 C -0.15 -2.71 6.12 -105.07 -0.64 -3.35 16 9 C 0.58 11.93 7.78 -12.49 -0.10 11.84 16 10 O -0.54 -13.08 16.58 5.28 0.09 -13.00 16 11 N -0.69 -12.81 4.24 -54.74 -0.23 -13.05 16 12 C 0.13 2.46 2.24 -67.81 -0.15 2.31 16 13 H 0.08 1.54 7.58 -51.93 -0.39 1.14 16 14 C 0.16 3.91 4.90 -3.71 -0.02 3.89 16 15 N -0.59 -14.31 2.91 -172.31 -0.50 -14.81 16 16 C -0.25 -6.96 9.58 -15.06 -0.14 -7.10 16 17 H 0.06 1.64 7.89 -52.48 -0.41 1.22 16 18 C 0.01 0.27 4.92 -17.43 -0.09 0.19 16 19 N -0.90 -26.95 11.20 55.49 0.62 -26.33 16 20 Si 0.90 22.71 29.59 -169.99 -5.03 17.68 16 21 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 22 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 23 H -0.28 -7.28 7.11 56.52 0.40 -6.88 16 24 C 0.14 2.84 6.50 -3.71 -0.02 2.82 16 25 C -0.13 -2.01 5.23 -26.45 -0.14 -2.15 16 26 C -0.09 -1.48 2.48 -90.42 -0.22 -1.70 16 27 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 28 C -0.14 -1.87 9.05 37.16 0.34 -1.53 16 29 C -0.13 -2.23 10.27 -38.55 -0.40 -2.62 16 30 C 0.02 0.32 6.60 -84.01 -0.55 -0.23 16 31 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.53 8.08 -51.93 -0.42 0.11 16 33 H 0.07 0.75 7.70 -51.93 -0.40 0.35 16 34 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 35 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 36 H 0.16 1.15 8.06 -52.48 -0.42 0.73 16 37 H 0.17 2.04 7.42 -52.48 -0.39 1.65 16 38 H 0.39 6.40 5.53 -40.82 -0.23 6.18 16 39 H 0.10 2.81 6.06 -51.93 -0.31 2.50 16 40 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 42 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.05 1.03 7.93 -51.93 -0.41 0.62 16 44 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.05 0.81 6.41 -51.93 -0.33 0.48 16 46 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 48 H 0.05 0.65 7.54 -51.93 -0.39 0.26 16 49 H 0.15 2.46 7.93 -52.48 -0.42 2.05 16 LS Contribution 391.46 15.07 5.90 5.90 Total: -1.00 -34.41 391.46 -10.34 -44.76 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: -7.47 Total: 6.63 kcal Atomic # 6 Polarization: 0.58 SS G_CDS: -3.54 Total: -2.96 kcal Atomic # 7 Polarization: -58.73 SS G_CDS: -0.29 Total: -59.02 kcal Atomic # 8 Polarization: -13.08 SS G_CDS: 0.09 Total: -13.00 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.03 Total: 17.68 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -34.41 -10.34 -44.76 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968541038.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.322 kcal (2) G-P(sol) polarization free energy of solvation -34.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.757 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds