Wall clock time and date at job start Wed Apr 1 2020 00:16:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35743 * 120.33214 * 2 1 4 4 C 1.40827 * 119.71726 * 179.97438 * 3 2 1 5 5 C 1.34547 * 120.58261 * 0.02562 * 4 3 2 6 6 N 1.37428 * 120.74526 * 359.97438 * 5 4 3 7 7 C 1.35134 * 131.29066 * 180.34095 * 6 5 4 8 8 C 1.38060 * 108.77131 * 180.12583 * 7 6 5 9 9 C 1.47495 * 126.37161 * 179.82779 * 8 7 6 10 10 O 1.21595 * 120.00119 * 179.68626 * 9 8 7 11 11 N 1.34781 * 120.00002 * 359.68833 * 9 8 7 12 12 C 1.46498 * 120.00195 * 179.97438 * 11 9 8 13 13 H 1.08999 * 109.49917 * 324.94059 * 12 11 9 14 14 C 1.53195 * 109.49234 * 85.00150 * 12 11 9 15 15 N 1.46917 * 108.77828 * 65.31890 * 14 12 11 16 16 C 1.36935 * 120.63313 * 233.58525 * 15 14 12 17 17 H 1.08003 * 120.00334 * 151.84309 * 16 15 14 18 18 C 1.38816 * 120.00109 * 331.84348 * 16 15 14 19 19 N 1.31624 * 119.99356 * 343.07479 * 18 16 15 20 20 Si 1.86793 * 120.00395 * 163.07501 * 18 16 15 21 21 H 1.48500 * 109.47341 * 59.99642 * 20 18 16 22 22 H 1.48504 * 109.47235 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.46651 * 299.99824 * 20 18 16 24 24 C 1.46934 * 118.73910 * 53.60508 * 15 14 12 25 25 C 1.53194 * 108.89214 * 306.32295 * 24 15 14 26 26 C 1.53042 * 109.50153 * 204.83823 * 12 11 9 27 27 H 1.08991 * 109.45872 * 181.41211 * 26 12 11 28 28 C 1.52999 * 109.45796 * 61.43341 * 26 12 11 29 29 C 1.41197 * 107.25269 * 359.56338 * 8 7 6 30 30 C 1.37945 * 119.80908 * 359.97438 * 6 5 4 31 31 H 1.08995 * 109.47066 * 270.01724 * 1 2 3 32 32 H 1.08993 * 109.46944 * 30.01836 * 1 2 3 33 33 H 1.09003 * 109.46889 * 150.02048 * 1 2 3 34 34 H 1.07994 * 120.14270 * 359.97438 * 3 2 1 35 35 H 1.07999 * 119.70516 * 180.02562 * 4 3 2 36 36 H 1.08006 * 119.62275 * 180.02562 * 5 4 3 37 37 H 1.08004 * 125.61065 * 359.97352 * 7 6 5 38 38 H 0.97007 * 120.00110 * 0.02562 * 11 9 8 39 39 H 1.09003 * 109.58933 * 305.52652 * 14 12 11 40 40 H 1.09007 * 109.58443 * 185.10331 * 14 12 11 41 41 H 0.96997 * 119.99488 * 180.02562 * 19 18 16 42 42 H 1.09003 * 109.58460 * 66.18260 * 24 15 14 43 43 H 1.09001 * 109.58650 * 186.46265 * 24 15 14 44 44 H 1.08996 * 109.49250 * 174.65763 * 25 24 15 45 45 H 1.09002 * 109.49602 * 294.75299 * 25 24 15 46 46 H 1.09000 * 109.46817 * 59.99939 * 28 26 12 47 47 H 1.08991 * 109.47274 * 179.97438 * 28 26 12 48 48 H 1.08995 * 109.47589 * 300.00425 * 28 26 12 49 49 H 1.08007 * 126.56185 * 180.26288 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1925 1.1716 0.0000 4 6 3.6007 1.1565 0.0005 5 6 4.2728 -0.0091 0.0006 6 7 3.6005 -1.2077 0.0006 7 6 4.0499 -2.4821 0.0066 8 6 2.9649 -3.3358 0.0006 9 6 3.0118 -4.8100 0.0006 10 8 1.9786 -5.4512 0.0006 11 7 4.1999 -5.4464 0.0005 12 6 4.2465 -6.9107 0.0011 13 1 3.4176 -7.3009 0.5916 14 6 4.1367 -7.4262 -1.4374 15 7 5.3268 -6.9986 -2.1851 16 6 5.2012 -6.3150 -3.3650 17 1 5.9746 -5.6283 -3.6762 18 6 4.0800 -6.5046 -4.1611 19 7 3.3101 -7.5557 -3.9738 20 14 3.6637 -5.2683 -5.4980 21 1 4.7846 -5.1930 -6.4691 22 1 2.4272 -5.6962 -6.2004 23 1 3.4478 -3.9322 -4.8866 24 6 6.6545 -7.3188 -1.6432 25 6 6.7396 -6.8040 -0.2028 26 6 5.5714 -7.3794 0.6069 27 1 5.6161 -8.4682 0.5841 28 6 5.6692 -6.8954 2.0550 29 6 1.8019 -2.5350 0.0007 30 6 2.2211 -1.2203 0.0011 31 1 -0.3633 0.0003 1.0276 32 1 -0.3633 0.8898 -0.5141 33 1 -0.3633 -0.8902 -0.5135 34 1 1.6603 2.1113 -0.0004 35 1 4.1459 2.0888 0.0010 36 1 5.3528 -0.0026 0.0014 37 1 5.0871 -2.7832 0.0125 38 1 5.0241 -4.9350 0.0009 39 1 3.2430 -7.0140 -1.9060 40 1 4.0800 -8.5148 -1.4321 41 1 2.5268 -7.6884 -4.5303 42 1 6.8031 -8.3986 -1.6547 43 1 7.4223 -6.8378 -2.2492 44 1 7.6842 -7.1189 0.2407 45 1 6.6815 -5.7155 -0.2015 46 1 4.8404 -7.3057 2.6320 47 1 6.6125 -7.2295 2.4869 48 1 5.6240 -5.8066 2.0781 49 1 0.7800 -2.8846 0.0007 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968541038.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:16:15 Heat of formation + Delta-G solvation = 33.513427 kcal Electronic energy + Delta-G solvation = -30614.606504 eV Core-core repulsion = 26734.980506 eV Total energy + Delta-G solvation = -3879.625999 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -43.21681 -40.94291 -39.03172 -37.52074 -35.90644 -35.03201 -34.29844 -32.83132 -31.67644 -30.62007 -29.39418 -28.83599 -27.79478 -25.94548 -24.96317 -23.55901 -22.94899 -22.72298 -22.45757 -20.94765 -20.26859 -18.82081 -18.64555 -17.90997 -17.08517 -16.79838 -16.61206 -16.44198 -16.17179 -15.74759 -15.60542 -15.26528 -15.03617 -14.83781 -14.74136 -14.54996 -14.30801 -14.13081 -14.04409 -13.70219 -13.54819 -13.19008 -13.08193 -13.01985 -12.70284 -12.62251 -12.57959 -12.48203 -12.35599 -12.27653 -12.03783 -11.94060 -11.54984 -11.30268 -11.10352 -11.04605 -10.95707 -10.52947 -9.97391 -9.50332 -8.62945 -8.30899 -7.85938 -5.30423 -0.18359 0.37394 1.13491 1.36272 1.42485 1.45855 1.70237 2.37553 2.47428 2.52743 2.65676 3.30404 3.52135 3.70096 3.75632 3.84434 3.93172 4.00944 4.02296 4.09989 4.14912 4.18706 4.43572 4.48361 4.54354 4.69022 4.73027 4.74024 4.76653 4.81827 4.85782 4.91809 4.97591 4.97635 5.11714 5.12215 5.18802 5.23305 5.26153 5.28474 5.36583 5.46579 5.48851 5.53847 5.60813 5.65605 5.73583 5.77256 5.89380 6.31251 6.39846 6.76135 7.15070 7.43051 7.89039 8.39692 9.18885 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.010070 B = 0.004136 C = 0.003484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2779.785122 B = 6767.751914 C = 8034.829467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.070 4.070 3 C -0.129 4.129 4 C -0.126 4.126 5 C 0.018 3.982 6 N -0.338 5.338 7 C -0.003 4.003 8 C -0.190 4.190 9 C 0.578 3.422 10 O -0.597 6.597 11 N -0.680 5.680 12 C 0.137 3.863 13 H 0.060 0.940 14 C 0.171 3.829 15 N -0.599 5.599 16 C -0.247 4.247 17 H 0.071 0.929 18 C -0.050 4.050 19 N -0.934 5.934 20 Si 0.951 3.049 21 H -0.266 1.266 22 H -0.301 1.301 23 H -0.288 1.288 24 C 0.135 3.865 25 C -0.115 4.115 26 C -0.087 4.087 27 H 0.077 0.923 28 C -0.135 4.135 29 C -0.176 4.176 30 C 0.024 3.976 31 H 0.085 0.915 32 H 0.095 0.905 33 H 0.055 0.945 34 H 0.164 0.836 35 H 0.186 0.814 36 H 0.195 0.805 37 H 0.204 0.796 38 H 0.405 0.595 39 H 0.045 0.955 40 H -0.003 1.003 41 H 0.244 0.756 42 H 0.013 0.987 43 H 0.058 0.942 44 H 0.094 0.906 45 H 0.063 0.937 46 H 0.047 0.953 47 H 0.078 0.922 48 H 0.056 0.944 49 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.902 19.069 14.044 24.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.071 4.071 3 C -0.149 4.149 4 C -0.145 4.145 5 C -0.099 4.099 6 N -0.001 5.001 7 C -0.136 4.136 8 C -0.197 4.197 9 C 0.366 3.634 10 O -0.480 6.480 11 N -0.330 5.330 12 C 0.030 3.970 13 H 0.078 0.922 14 C 0.044 3.956 15 N -0.322 5.322 16 C -0.378 4.378 17 H 0.089 0.911 18 C -0.245 4.245 19 N -0.580 5.580 20 Si 0.781 3.219 21 H -0.191 1.191 22 H -0.228 1.228 23 H -0.215 1.215 24 C 0.010 3.990 25 C -0.154 4.154 26 C -0.106 4.106 27 H 0.095 0.905 28 C -0.192 4.192 29 C -0.201 4.201 30 C -0.081 4.081 31 H 0.103 0.897 32 H 0.113 0.887 33 H 0.074 0.926 34 H 0.182 0.818 35 H 0.203 0.797 36 H 0.212 0.788 37 H 0.221 0.779 38 H 0.242 0.758 39 H 0.063 0.937 40 H 0.015 0.985 41 H 0.053 0.947 42 H 0.031 0.969 43 H 0.077 0.923 44 H 0.112 0.888 45 H 0.082 0.918 46 H 0.066 0.934 47 H 0.097 0.903 48 H 0.075 0.925 49 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 5.315 18.706 13.937 23.925 hybrid contribution -0.652 -0.198 -1.329 1.493 sum 4.663 18.509 12.608 22.875 Atomic orbital electron populations 1.20759 0.88647 1.03679 1.03480 1.19689 0.97560 0.89842 1.00019 1.21298 0.94488 0.98108 1.01023 1.21254 0.94648 0.98137 1.00488 1.22434 1.00225 0.82230 1.05006 1.41452 1.06944 1.06094 1.45616 1.22319 0.99715 0.80506 1.11107 1.19661 0.94932 0.91930 1.13222 1.17813 0.83604 0.86762 0.75203 1.90697 1.35180 1.68748 1.53364 1.45483 1.07387 1.07058 1.73053 1.21485 0.98493 0.79932 0.97043 0.92173 1.20860 0.91022 0.94168 0.89520 1.44147 1.00657 1.65454 1.21986 1.19381 1.05424 1.16207 0.96788 0.91144 1.25685 1.00567 0.98120 1.00141 1.70160 1.17642 1.27902 1.42301 0.85572 0.77265 0.79220 0.79873 1.19098 1.22781 1.21529 1.21161 0.86797 0.96730 0.94263 1.22018 0.98023 1.00378 0.94955 1.21322 0.92792 1.00649 0.95801 0.90515 1.21757 1.02301 1.01324 0.93818 1.21051 0.98299 0.90388 1.10324 1.18861 0.82837 0.94962 1.11470 0.89677 0.88667 0.92598 0.81834 0.79683 0.78785 0.77947 0.75792 0.93683 0.98523 0.94710 0.96919 0.92310 0.88792 0.91849 0.93415 0.90317 0.92503 0.84603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.94 9.91 71.24 0.71 -1.23 16 2 C -0.07 -1.55 5.91 -19.67 -0.12 -1.67 16 3 C -0.13 -2.00 9.72 22.32 0.22 -1.78 16 4 C -0.13 -1.62 9.97 22.06 0.22 -1.40 16 5 C 0.02 0.30 10.89 82.97 0.90 1.20 16 6 N -0.34 -8.70 2.92 -345.06 -1.01 -9.71 16 7 C 0.00 -0.08 11.09 84.14 0.93 0.86 16 8 C -0.19 -7.09 6.12 -20.15 -0.12 -7.21 16 9 C 0.58 25.20 7.78 86.68 0.67 25.87 16 10 O -0.60 -31.55 16.58 -4.02 -0.07 -31.61 16 11 N -0.68 -25.70 4.24 -445.36 -1.89 -27.59 16 12 C 0.14 5.50 2.24 45.07 0.10 5.60 16 13 H 0.06 2.61 7.58 -2.39 -0.02 2.59 16 14 C 0.17 8.86 4.90 86.37 0.42 9.28 16 15 N -0.60 -29.77 2.91 -699.07 -2.04 -31.81 16 16 C -0.25 -13.73 9.58 84.03 0.81 -12.93 16 17 H 0.07 3.73 7.89 -2.91 -0.02 3.70 16 18 C -0.05 -2.94 4.92 84.86 0.42 -2.52 16 19 N -0.93 -59.52 11.20 21.65 0.24 -59.28 16 20 Si 0.95 48.21 29.59 68.60 2.03 50.24 16 21 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 22 H -0.30 -15.66 7.11 99.48 0.71 -14.95 16 23 H -0.29 -14.62 7.11 99.48 0.71 -13.92 16 24 C 0.14 5.21 6.50 86.36 0.56 5.77 16 25 C -0.11 -3.23 5.23 30.78 0.16 -3.07 16 26 C -0.09 -2.59 2.48 -10.66 -0.03 -2.62 16 27 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 28 C -0.13 -3.09 9.05 71.98 0.65 -2.44 16 29 C -0.18 -6.40 10.27 22.94 0.24 -6.16 16 30 C 0.02 0.71 6.60 38.90 0.26 0.97 16 31 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.09 1.20 8.08 -2.39 -0.02 1.18 16 33 H 0.05 1.20 7.70 -2.39 -0.02 1.18 16 34 H 0.16 1.44 8.06 -2.91 -0.02 1.41 16 35 H 0.19 0.84 8.06 -2.91 -0.02 0.81 16 36 H 0.20 1.73 8.06 -2.91 -0.02 1.71 16 37 H 0.20 4.24 7.42 -2.91 -0.02 4.22 16 38 H 0.40 12.80 5.53 -92.70 -0.51 12.28 16 39 H 0.04 2.81 6.06 -2.39 -0.01 2.80 16 40 H 0.00 -0.18 8.14 -2.38 -0.02 -0.20 16 41 H 0.24 15.40 8.31 -92.71 -0.77 14.63 16 42 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 43 H 0.06 2.18 7.93 -2.39 -0.02 2.16 16 44 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 45 H 0.06 1.69 6.41 -2.39 -0.02 1.67 16 46 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 47 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 48 H 0.06 1.25 7.54 -2.39 -0.02 1.24 16 49 H 0.14 5.08 7.93 -2.91 -0.02 5.05 16 Total: -1.00 -83.59 391.46 4.71 -78.88 By element: Atomic # 1 Polarization: 23.92 SS G_CDS: 0.44 Total: 24.36 kcal Atomic # 6 Polarization: -0.48 SS G_CDS: 7.00 Total: 6.52 kcal Atomic # 7 Polarization: -123.70 SS G_CDS: -4.69 Total: -128.39 kcal Atomic # 8 Polarization: -31.55 SS G_CDS: -0.07 Total: -31.61 kcal Atomic # 14 Polarization: 48.21 SS G_CDS: 2.03 Total: 50.24 kcal Total: -83.59 4.71 -78.88 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968541038.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.393 kcal (2) G-P(sol) polarization free energy of solvation -83.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.880 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds