Wall clock time and date at job start Wed Apr 1 2020 00:47:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.36895 * 125.05942 * 2 1 4 4 H 0.97001 * 125.01376 * 359.96321 * 3 2 1 5 5 C 1.37120 * 109.97188 * 180.02562 * 3 2 1 6 6 C 1.40633 * 107.25772 * 359.97438 * 5 3 2 7 7 C 1.39534 * 120.04374 * 180.02562 * 6 5 3 8 8 C 1.37907 * 119.99679 * 0.02642 * 7 6 5 9 9 C 1.38320 * 120.58971 * 359.95063 * 8 7 6 10 10 C 1.39351 * 120.49474 * 0.04744 * 9 8 7 11 11 C 1.47505 * 120.20745 * 179.97438 * 10 9 8 12 12 O 1.21592 * 119.99884 * 179.97438 * 11 10 9 13 13 N 1.34777 * 120.00307 * 359.97438 * 11 10 9 14 14 C 1.46493 * 120.00154 * 179.97438 * 13 11 10 15 15 H 1.08995 * 109.47432 * 325.00446 * 14 13 11 16 16 C 1.53000 * 109.46994 * 85.00624 * 14 13 11 17 17 C 1.53000 * 109.47148 * 205.00226 * 14 13 11 18 18 C 1.53950 * 113.74144 * 161.82254 * 17 14 13 19 19 N 1.47814 * 86.03577 * 222.08493 * 18 17 14 20 20 C 1.36938 * 134.45391 * 204.64504 * 19 18 17 21 21 H 1.07996 * 119.99851 * 179.87239 * 20 19 18 22 22 C 1.38818 * 120.00324 * 359.86508 * 20 19 18 23 23 N 1.31619 * 119.99398 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00221 * 180.02562 * 22 20 19 25 25 H 1.48508 * 109.47037 * 0.02562 * 24 22 20 26 26 H 1.48492 * 109.47485 * 120.00271 * 24 22 20 27 27 H 1.48504 * 109.47138 * 240.00568 * 24 22 20 28 28 C 1.47575 * 91.05195 * 24.55199 * 19 18 17 29 29 C 1.34206 * 125.05728 * 179.69375 * 2 1 3 30 30 C 1.50703 * 126.55602 * 359.97438 * 29 2 1 31 31 H 1.09001 * 109.46783 * 90.03292 * 1 2 3 32 32 H 1.09000 * 109.46864 * 210.02297 * 1 2 3 33 33 H 1.08996 * 109.46963 * 330.02559 * 1 2 3 34 34 H 1.08010 * 120.00543 * 180.02562 * 7 6 5 35 35 H 1.07997 * 119.70937 * 179.97438 * 8 7 6 36 36 H 1.08004 * 119.75480 * 180.02562 * 9 8 7 37 37 H 0.96999 * 119.99824 * 0.02562 * 13 11 10 38 38 H 1.09004 * 109.47547 * 60.07444 * 16 14 13 39 39 H 1.09007 * 109.47148 * 180.02562 * 16 14 13 40 40 H 1.08998 * 109.47210 * 300.07110 * 16 14 13 41 41 H 1.09000 * 112.94779 * 293.41751 * 17 14 13 42 42 H 1.08992 * 113.77342 * 336.35153 * 18 17 14 43 43 H 1.09001 * 113.76653 * 107.75235 * 18 17 14 44 44 H 0.97005 * 119.99472 * 179.97438 * 23 22 20 45 45 H 1.08999 * 113.77116 * 221.15328 * 28 19 18 46 46 H 1.08994 * 113.87448 * 89.76456 * 28 19 18 47 47 H 1.08999 * 109.47100 * 90.03064 * 30 29 2 48 48 H 1.08998 * 109.47446 * 210.02233 * 30 29 2 49 49 H 1.08996 * 109.46940 * 330.02624 * 30 29 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2934 1.1206 0.0000 4 1 1.9628 2.0325 -0.0005 5 6 3.6173 0.7636 -0.0006 6 6 3.6706 -0.6417 -0.0004 7 6 4.9040 -1.2940 -0.0003 8 6 6.0719 -0.5606 0.0001 9 6 6.0347 0.8221 -0.0006 10 6 4.8154 1.4967 -0.0007 11 6 4.7832 2.9714 -0.0009 12 8 3.7171 3.5562 -0.0014 13 7 5.9353 3.6707 -0.0004 14 6 5.9033 5.1353 -0.0011 15 1 5.0541 5.4799 -0.5912 16 6 5.7655 5.6431 1.4356 17 6 7.1995 5.6735 -0.6101 18 6 7.1070 7.1405 -1.0677 19 7 7.8584 6.7073 -2.2647 20 6 8.6745 7.3385 -3.1651 21 1 9.1170 6.7800 -3.9766 22 6 8.9329 8.6962 -3.0350 23 7 8.3937 9.3767 -2.0457 24 14 10.0456 9.5572 -4.2637 25 1 10.5206 8.5769 -5.2730 26 1 9.2890 10.6393 -4.9431 27 1 11.2115 10.1400 -3.5520 28 6 7.3779 5.3219 -2.0983 29 6 2.2779 -1.0986 0.0059 30 6 1.8026 -2.5286 0.0141 31 1 -0.3633 -0.0006 -1.0277 32 1 -0.3633 -0.8898 0.5142 33 1 -0.3633 0.8902 0.5134 34 1 4.9442 -2.3734 -0.0005 35 1 7.0240 -1.0703 0.0006 36 1 6.9576 1.3831 -0.0007 37 1 6.7858 3.2042 -0.0003 38 1 6.6154 5.2997 2.0254 39 1 5.7412 6.7329 1.4350 40 1 4.8427 5.2587 1.8699 41 1 8.0770 5.4585 -0.0002 42 1 6.0907 7.4705 -1.2825 43 1 7.6554 7.8347 -0.4309 44 1 8.5746 10.3254 -1.9545 45 1 8.1420 4.5668 -2.2827 46 1 6.4414 5.1146 -2.6160 47 1 1.6881 -2.8793 -1.0116 48 1 2.5325 -3.1512 0.5314 49 1 0.8434 -2.5897 0.5282 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969986196.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:47:30 Heat of formation + Delta-G solvation = 61.043561 kcal Electronic energy + Delta-G solvation = -29076.145995 eV Core-core repulsion = 25197.713792 eV Total energy + Delta-G solvation = -3878.432202 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.66644 -39.71326 -38.05362 -37.07352 -34.83560 -33.36686 -32.28355 -31.53608 -30.83563 -29.63756 -28.04242 -27.47499 -26.08228 -24.91877 -24.22660 -23.25462 -21.98822 -21.22285 -20.23494 -19.61453 -18.92475 -17.74472 -17.18313 -16.76558 -16.12295 -15.84503 -15.35781 -15.13270 -14.80825 -14.70686 -14.28445 -14.06706 -13.94096 -13.58263 -13.42263 -13.27094 -13.14721 -12.97796 -12.91277 -12.54220 -12.32187 -12.21615 -12.05990 -11.82004 -11.61083 -11.57438 -11.40358 -11.35197 -11.22035 -10.89395 -10.67135 -10.33474 -10.08030 -9.81392 -9.69848 -9.63923 -9.41704 -8.87309 -8.79147 -8.33827 -7.76594 -6.87054 -5.76625 -3.08539 0.55254 1.45400 2.26191 2.99369 3.00697 3.27025 3.38940 3.44168 3.46786 3.83215 4.35580 4.45366 4.57076 4.70068 4.79496 4.91975 4.95834 4.98344 5.12167 5.15757 5.16632 5.23185 5.40315 5.41095 5.48845 5.53552 5.54919 5.55904 5.65396 5.67574 5.76285 5.82255 5.87776 6.00207 6.07471 6.13904 6.27198 6.33472 6.36583 6.45001 6.47843 6.58701 6.63223 6.63391 6.80701 6.95795 7.22716 7.36531 7.42329 7.56304 7.64628 7.98561 8.29655 9.05202 9.71296 10.60574 11.40783 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.020856 B = 0.002164 C = 0.002102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.196426 B =12934.244159 C =13318.434545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.075 3.925 3 N -0.574 5.574 4 H 0.426 0.574 5 C 0.155 3.845 6 C -0.114 4.114 7 C -0.045 4.045 8 C -0.159 4.159 9 C -0.059 4.059 10 C -0.147 4.147 11 C 0.562 3.438 12 O -0.558 6.558 13 N -0.711 5.711 14 C 0.151 3.849 15 H 0.087 0.913 16 C -0.157 4.157 17 C -0.147 4.147 18 C 0.176 3.824 19 N -0.613 5.613 20 C -0.221 4.221 21 H 0.080 0.920 22 C -0.010 4.010 23 N -0.921 5.921 24 Si 0.912 3.088 25 H -0.280 1.280 26 H -0.291 1.291 27 H -0.290 1.290 28 C 0.125 3.875 29 C -0.176 4.176 30 C -0.074 4.074 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.069 0.931 34 H 0.124 0.876 35 H 0.129 0.871 36 H 0.130 0.870 37 H 0.398 0.602 38 H 0.054 0.946 39 H 0.071 0.929 40 H 0.052 0.948 41 H 0.089 0.911 42 H 0.028 0.972 43 H 0.075 0.925 44 H 0.253 0.747 45 H 0.041 0.959 46 H 0.032 0.968 47 H 0.062 0.938 48 H 0.062 0.938 49 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.025 -24.090 8.542 28.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.033 4.033 3 N -0.177 5.177 4 H 0.266 0.734 5 C 0.043 3.957 6 C -0.119 4.119 7 C -0.063 4.063 8 C -0.178 4.178 9 C -0.079 4.079 10 C -0.153 4.153 11 C 0.350 3.650 12 O -0.438 6.438 13 N -0.360 5.360 14 C 0.046 3.954 15 H 0.106 0.894 16 C -0.216 4.216 17 C -0.168 4.168 18 C 0.050 3.950 19 N -0.339 5.339 20 C -0.349 4.349 21 H 0.097 0.903 22 C -0.206 4.206 23 N -0.569 5.569 24 Si 0.742 3.258 25 H -0.205 1.205 26 H -0.218 1.218 27 H -0.217 1.217 28 C -0.001 4.001 29 C -0.183 4.183 30 C -0.131 4.131 31 H 0.096 0.904 32 H 0.103 0.897 33 H 0.088 0.912 34 H 0.142 0.858 35 H 0.147 0.853 36 H 0.148 0.852 37 H 0.233 0.767 38 H 0.073 0.927 39 H 0.089 0.911 40 H 0.071 0.929 41 H 0.107 0.893 42 H 0.045 0.955 43 H 0.093 0.907 44 H 0.063 0.937 45 H 0.059 0.941 46 H 0.049 0.951 47 H 0.081 0.919 48 H 0.081 0.919 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -12.681 -23.228 8.387 27.761 hybrid contribution 0.916 0.906 -0.772 1.502 sum -11.765 -22.321 7.615 26.356 Atomic orbital electron populations 1.20479 0.87710 1.03684 1.03230 1.20202 0.93474 0.85581 1.04012 1.41856 1.03827 1.09100 1.62964 0.73367 1.17874 0.84150 0.93145 1.00515 1.19046 0.93422 0.91466 1.07983 1.20654 0.90319 0.99563 0.95808 1.20781 0.98155 0.93465 1.05379 1.21071 0.95751 0.94743 0.96356 1.18991 0.91528 0.92328 1.12489 1.18150 0.84283 0.86547 0.76012 1.90668 1.29983 1.71462 1.51685 1.46028 1.08105 1.07878 1.74029 1.21134 0.99759 0.77667 0.96812 0.89449 1.22106 1.01317 1.02006 0.96125 1.23866 0.95368 1.01102 0.96415 1.22224 0.94632 0.90421 0.87700 1.46000 1.52529 1.04210 1.31121 1.19072 1.19221 0.91589 1.05027 0.90253 1.24790 1.00769 0.96197 0.98839 1.69822 1.47467 1.07715 1.31885 0.86048 0.79895 0.79528 0.80309 1.20479 1.21761 1.21692 1.22530 0.96338 0.89334 0.91870 1.19991 0.90287 0.94804 1.13220 1.20079 1.00605 0.90843 1.01553 0.90357 0.89697 0.91212 0.85757 0.85308 0.85191 0.76650 0.92717 0.91054 0.92896 0.89279 0.95456 0.90668 0.93690 0.94110 0.95058 0.91946 0.91927 0.91954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.60 10.18 36.01 0.37 -0.23 16 2 C 0.08 0.76 7.08 -81.75 -0.58 0.18 16 3 N -0.57 -7.03 5.87 -6.76 -0.04 -7.07 16 4 H 0.43 5.26 7.54 -40.82 -0.31 4.95 16 5 C 0.15 2.05 6.87 -83.76 -0.58 1.48 16 6 C -0.11 -1.34 6.35 -105.15 -0.67 -2.01 16 7 C -0.04 -0.43 10.09 -39.22 -0.40 -0.83 16 8 C -0.16 -1.46 10.00 -39.67 -0.40 -1.85 16 9 C -0.06 -0.62 9.52 -39.14 -0.37 -0.99 16 10 C -0.15 -1.93 5.88 -104.87 -0.62 -2.55 16 11 C 0.56 8.37 7.73 -12.48 -0.10 8.27 16 12 O -0.56 -9.74 14.82 5.28 0.08 -9.66 16 13 N -0.71 -9.67 4.89 -54.86 -0.27 -9.94 16 14 C 0.15 2.37 2.29 -67.93 -0.16 2.21 16 15 H 0.09 1.58 7.48 -51.93 -0.39 1.19 16 16 C -0.16 -2.25 9.44 37.16 0.35 -1.90 16 17 C -0.15 -2.66 3.35 -89.69 -0.30 -2.96 16 18 C 0.18 4.11 6.98 -2.84 -0.02 4.09 16 19 N -0.61 -15.86 3.70 -177.69 -0.66 -16.52 16 20 C -0.22 -6.29 10.70 -15.06 -0.16 -6.45 16 21 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 22 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 23 N -0.92 -27.50 11.39 55.49 0.63 -26.87 16 24 Si 0.91 22.34 29.55 -169.99 -5.02 17.32 16 25 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 26 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 27 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 28 C 0.13 2.57 8.38 -2.97 -0.02 2.54 16 29 C -0.18 -1.80 6.32 -102.68 -0.65 -2.45 16 30 C -0.07 -0.51 10.17 36.01 0.37 -0.14 16 31 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.08 0.40 7.04 -51.93 -0.37 0.04 16 33 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.12 0.89 8.06 -52.48 -0.42 0.47 16 35 H 0.13 0.85 8.06 -52.49 -0.42 0.42 16 36 H 0.13 1.06 6.38 -52.48 -0.33 0.73 16 37 H 0.40 4.47 6.62 -40.82 -0.27 4.20 16 38 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.07 1.04 8.09 -51.92 -0.42 0.62 16 40 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.09 1.54 8.14 -51.93 -0.42 1.11 16 42 H 0.03 0.66 8.03 -51.93 -0.42 0.25 16 43 H 0.08 1.92 7.16 -51.93 -0.37 1.55 16 44 H 0.25 7.29 8.31 -40.82 -0.34 6.96 16 45 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 46 H 0.03 0.66 8.10 -51.93 -0.42 0.24 16 47 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 49 H 0.06 0.34 7.06 -51.93 -0.37 -0.03 16 LS Contribution 399.28 15.07 6.02 6.02 Total: -1.00 -34.27 399.28 -10.72 -45.00 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: -7.44 Total: 5.70 kcal Atomic # 6 Polarization: 0.05 SS G_CDS: -4.02 Total: -3.97 kcal Atomic # 7 Polarization: -60.06 SS G_CDS: -0.33 Total: -60.40 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: 0.08 Total: -9.66 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -34.27 -10.72 -45.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969986196.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.040 kcal (2) G-P(sol) polarization free energy of solvation -34.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds