Wall clock time and date at job start Wed Apr 1 2020 00:47:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.36895 * 125.05942 * 2 1 4 4 H 0.97001 * 125.01376 * 359.96321 * 3 2 1 5 5 C 1.37120 * 109.97188 * 180.02562 * 3 2 1 6 6 C 1.40633 * 107.25772 * 359.97438 * 5 3 2 7 7 C 1.39534 * 120.04374 * 180.02562 * 6 5 3 8 8 C 1.37907 * 119.99679 * 0.02642 * 7 6 5 9 9 C 1.38320 * 120.58971 * 359.95063 * 8 7 6 10 10 C 1.39351 * 120.49474 * 0.04744 * 9 8 7 11 11 C 1.47505 * 120.20745 * 179.97438 * 10 9 8 12 12 O 1.21592 * 119.99884 * 179.97438 * 11 10 9 13 13 N 1.34777 * 120.00307 * 359.97438 * 11 10 9 14 14 C 1.46493 * 120.00154 * 179.97438 * 13 11 10 15 15 H 1.08995 * 109.47432 * 325.00446 * 14 13 11 16 16 C 1.53000 * 109.46994 * 85.00624 * 14 13 11 17 17 C 1.53000 * 109.47148 * 205.00226 * 14 13 11 18 18 C 1.53950 * 113.74144 * 161.82254 * 17 14 13 19 19 N 1.47814 * 86.03577 * 222.08493 * 18 17 14 20 20 C 1.36938 * 134.45391 * 204.64504 * 19 18 17 21 21 H 1.07996 * 119.99851 * 179.87239 * 20 19 18 22 22 C 1.38818 * 120.00324 * 359.86508 * 20 19 18 23 23 N 1.31619 * 119.99398 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00221 * 180.02562 * 22 20 19 25 25 H 1.48508 * 109.47037 * 0.02562 * 24 22 20 26 26 H 1.48492 * 109.47485 * 120.00271 * 24 22 20 27 27 H 1.48504 * 109.47138 * 240.00568 * 24 22 20 28 28 C 1.47575 * 91.05195 * 24.55199 * 19 18 17 29 29 C 1.34206 * 125.05728 * 179.69375 * 2 1 3 30 30 C 1.50703 * 126.55602 * 359.97438 * 29 2 1 31 31 H 1.09001 * 109.46783 * 90.03292 * 1 2 3 32 32 H 1.09000 * 109.46864 * 210.02297 * 1 2 3 33 33 H 1.08996 * 109.46963 * 330.02559 * 1 2 3 34 34 H 1.08010 * 120.00543 * 180.02562 * 7 6 5 35 35 H 1.07997 * 119.70937 * 179.97438 * 8 7 6 36 36 H 1.08004 * 119.75480 * 180.02562 * 9 8 7 37 37 H 0.96999 * 119.99824 * 0.02562 * 13 11 10 38 38 H 1.09004 * 109.47547 * 60.07444 * 16 14 13 39 39 H 1.09007 * 109.47148 * 180.02562 * 16 14 13 40 40 H 1.08998 * 109.47210 * 300.07110 * 16 14 13 41 41 H 1.09000 * 112.94779 * 293.41751 * 17 14 13 42 42 H 1.08992 * 113.77342 * 336.35153 * 18 17 14 43 43 H 1.09001 * 113.76653 * 107.75235 * 18 17 14 44 44 H 0.97005 * 119.99472 * 179.97438 * 23 22 20 45 45 H 1.08999 * 113.77116 * 221.15328 * 28 19 18 46 46 H 1.08994 * 113.87448 * 89.76456 * 28 19 18 47 47 H 1.08999 * 109.47100 * 90.03064 * 30 29 2 48 48 H 1.08998 * 109.47446 * 210.02233 * 30 29 2 49 49 H 1.08996 * 109.46940 * 330.02624 * 30 29 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2934 1.1206 0.0000 4 1 1.9628 2.0325 -0.0005 5 6 3.6173 0.7636 -0.0006 6 6 3.6706 -0.6417 -0.0004 7 6 4.9040 -1.2940 -0.0003 8 6 6.0719 -0.5606 0.0001 9 6 6.0347 0.8221 -0.0006 10 6 4.8154 1.4967 -0.0007 11 6 4.7832 2.9714 -0.0009 12 8 3.7171 3.5562 -0.0014 13 7 5.9353 3.6707 -0.0004 14 6 5.9033 5.1353 -0.0011 15 1 5.0541 5.4799 -0.5912 16 6 5.7655 5.6431 1.4356 17 6 7.1995 5.6735 -0.6101 18 6 7.1070 7.1405 -1.0677 19 7 7.8584 6.7073 -2.2647 20 6 8.6745 7.3385 -3.1651 21 1 9.1170 6.7800 -3.9766 22 6 8.9329 8.6962 -3.0350 23 7 8.3937 9.3767 -2.0457 24 14 10.0456 9.5572 -4.2637 25 1 10.5206 8.5769 -5.2730 26 1 9.2890 10.6393 -4.9431 27 1 11.2115 10.1400 -3.5520 28 6 7.3779 5.3219 -2.0983 29 6 2.2779 -1.0986 0.0059 30 6 1.8026 -2.5286 0.0141 31 1 -0.3633 -0.0006 -1.0277 32 1 -0.3633 -0.8898 0.5142 33 1 -0.3633 0.8902 0.5134 34 1 4.9442 -2.3734 -0.0005 35 1 7.0240 -1.0703 0.0006 36 1 6.9576 1.3831 -0.0007 37 1 6.7858 3.2042 -0.0003 38 1 6.6154 5.2997 2.0254 39 1 5.7412 6.7329 1.4350 40 1 4.8427 5.2587 1.8699 41 1 8.0770 5.4585 -0.0002 42 1 6.0907 7.4705 -1.2825 43 1 7.6554 7.8347 -0.4309 44 1 8.5746 10.3254 -1.9545 45 1 8.1420 4.5668 -2.2827 46 1 6.4414 5.1146 -2.6160 47 1 1.6881 -2.8793 -1.0116 48 1 2.5325 -3.1512 0.5314 49 1 0.8434 -2.5897 0.5282 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969986196.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:47:28 Heat of formation + Delta-G solvation = 40.364339 kcal Electronic energy + Delta-G solvation = -29077.042713 eV Core-core repulsion = 25197.713792 eV Total energy + Delta-G solvation = -3879.328921 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -42.47076 -40.95096 -39.61912 -37.89563 -36.23896 -34.20782 -34.08794 -32.61946 -31.65631 -30.67261 -29.33823 -28.69303 -26.75613 -26.63502 -25.82591 -24.51078 -22.79169 -22.61961 -21.37319 -20.87221 -20.03187 -18.85545 -18.56909 -18.11316 -17.28814 -16.85734 -16.81610 -16.25255 -15.89424 -15.86688 -15.64996 -15.41021 -15.00783 -14.88794 -14.72418 -14.12585 -14.00910 -13.78208 -13.62972 -13.54464 -13.39691 -13.29591 -13.17320 -13.11034 -12.98349 -12.79384 -12.72168 -12.56678 -12.37699 -12.32553 -12.05486 -11.97629 -11.82938 -11.61268 -11.25165 -10.89938 -10.88316 -10.51905 -10.09200 -9.14053 -8.94585 -8.53068 -7.92575 -5.26262 -0.28163 0.66090 1.44172 1.45511 1.45789 1.55752 2.03582 2.11993 2.21898 2.45637 2.96967 3.27542 3.36372 3.58286 3.68396 3.80830 3.90845 3.99103 4.05078 4.23612 4.24772 4.35003 4.41071 4.41142 4.51512 4.54132 4.70217 4.74036 4.74457 4.80391 4.83480 4.85601 4.92538 4.96285 5.00446 5.05972 5.08607 5.18766 5.22631 5.24524 5.26910 5.40016 5.48963 5.52285 5.58052 5.62227 5.77778 5.91792 5.92256 6.18435 6.52262 6.62194 6.90195 7.19430 7.58576 8.54208 9.24694 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.020856 B = 0.002164 C = 0.002102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.196426 B =12934.244159 C =13318.434545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.060 3.940 3 N -0.586 5.586 4 H 0.419 0.581 5 C 0.123 3.877 6 C -0.135 4.135 7 C -0.040 4.040 8 C -0.158 4.158 9 C -0.054 4.054 10 C -0.175 4.175 11 C 0.560 3.440 12 O -0.592 6.592 13 N -0.700 5.700 14 C 0.163 3.837 15 H 0.060 0.940 16 C -0.150 4.150 17 C -0.109 4.109 18 C 0.171 3.829 19 N -0.644 5.644 20 C -0.235 4.235 21 H 0.084 0.916 22 C -0.070 4.070 23 N -0.954 5.954 24 Si 0.980 3.020 25 H -0.265 1.265 26 H -0.295 1.295 27 H -0.289 1.289 28 C 0.127 3.873 29 C -0.185 4.185 30 C -0.071 4.071 31 H 0.086 0.914 32 H 0.105 0.895 33 H 0.071 0.929 34 H 0.153 0.847 35 H 0.162 0.838 36 H 0.152 0.848 37 H 0.413 0.587 38 H 0.075 0.925 39 H 0.064 0.936 40 H 0.049 0.951 41 H 0.108 0.892 42 H 0.010 0.990 43 H 0.048 0.952 44 H 0.249 0.751 45 H 0.064 0.936 46 H 0.028 0.972 47 H 0.069 0.931 48 H 0.070 0.930 49 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.042 -27.212 8.687 30.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.047 4.047 3 N -0.189 5.189 4 H 0.258 0.742 5 C 0.012 3.988 6 C -0.140 4.140 7 C -0.059 4.059 8 C -0.177 4.177 9 C -0.074 4.074 10 C -0.181 4.181 11 C 0.350 3.650 12 O -0.475 6.475 13 N -0.351 5.351 14 C 0.058 3.942 15 H 0.078 0.922 16 C -0.209 4.209 17 C -0.128 4.128 18 C 0.045 3.955 19 N -0.370 5.370 20 C -0.363 4.363 21 H 0.101 0.899 22 C -0.262 4.262 23 N -0.603 5.603 24 Si 0.808 3.192 25 H -0.189 1.189 26 H -0.222 1.222 27 H -0.215 1.215 28 C 0.002 3.998 29 C -0.191 4.191 30 C -0.128 4.128 31 H 0.104 0.896 32 H 0.123 0.877 33 H 0.089 0.911 34 H 0.170 0.830 35 H 0.180 0.820 36 H 0.170 0.830 37 H 0.250 0.750 38 H 0.094 0.906 39 H 0.083 0.917 40 H 0.068 0.932 41 H 0.126 0.874 42 H 0.028 0.972 43 H 0.067 0.933 44 H 0.058 0.942 45 H 0.082 0.918 46 H 0.046 0.954 47 H 0.087 0.913 48 H 0.089 0.911 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -11.686 -26.419 8.532 30.122 hybrid contribution 0.572 1.782 -0.830 2.047 sum -11.114 -24.638 7.702 28.105 Atomic orbital electron populations 1.20584 0.85422 1.04754 1.04039 1.20836 0.95036 0.85047 1.03821 1.42026 1.04115 1.09345 1.63448 0.74189 1.18280 0.84582 0.94313 1.01653 1.19470 0.94963 0.91019 1.08549 1.21081 0.89711 1.01102 0.94000 1.21182 0.99425 0.92954 1.04149 1.21405 0.95471 0.95682 0.94814 1.18979 0.92800 0.90980 1.15372 1.18520 0.83799 0.87542 0.75175 1.90646 1.31238 1.72317 1.53295 1.45790 1.08725 1.06696 1.73901 1.20765 0.97202 0.79096 0.97135 0.92220 1.22035 1.02070 1.01575 0.95189 1.23465 0.97084 0.96742 0.95550 1.22125 0.92917 0.93195 0.87227 1.46435 1.52635 1.06596 1.31336 1.19473 1.19319 0.92138 1.05385 0.89858 1.25664 1.02692 0.97031 1.00852 1.70010 1.49071 1.07570 1.33640 0.84988 0.77774 0.78205 0.78222 1.18891 1.22185 1.21544 1.22664 0.96464 0.87479 0.93162 1.20461 0.89749 0.96329 1.12588 1.20156 1.01550 0.88773 1.02330 0.89575 0.87674 0.91051 0.82979 0.82048 0.83027 0.74952 0.90647 0.91687 0.93193 0.87362 0.97247 0.93344 0.94214 0.91811 0.95390 0.91260 0.91109 0.90375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.08 10.18 71.24 0.73 -0.36 16 2 C 0.06 1.19 7.08 40.85 0.29 1.48 16 3 N -0.59 -14.89 5.87 -175.30 -1.03 -15.92 16 4 H 0.42 11.16 7.54 -92.71 -0.70 10.46 16 5 C 0.12 3.29 6.87 39.44 0.27 3.56 16 6 C -0.14 -3.03 6.35 -20.21 -0.13 -3.15 16 7 C -0.04 -0.68 10.09 22.50 0.23 -0.45 16 8 C -0.16 -2.40 10.00 22.21 0.22 -2.18 16 9 C -0.05 -1.01 9.52 22.56 0.21 -0.80 16 10 C -0.18 -4.52 5.88 -20.03 -0.12 -4.64 16 11 C 0.56 16.78 7.73 86.69 0.67 17.45 16 12 O -0.59 -21.56 14.82 -4.01 -0.06 -21.62 16 13 N -0.70 -18.39 4.89 -445.75 -2.18 -20.58 16 14 C 0.16 5.11 2.29 44.99 0.10 5.21 16 15 H 0.06 2.24 7.48 -2.39 -0.02 2.22 16 16 C -0.15 -4.24 9.44 71.98 0.68 -3.56 16 17 C -0.11 -3.84 3.35 -10.13 -0.03 -3.88 16 18 C 0.17 8.22 6.98 86.44 0.60 8.82 16 19 N -0.64 -33.61 3.70 -716.10 -2.65 -36.26 16 20 C -0.23 -13.41 10.70 84.03 0.90 -12.51 16 21 H 0.08 4.55 7.83 -2.91 -0.02 4.52 16 22 C -0.07 -4.03 5.50 84.86 0.47 -3.56 16 23 N -0.95 -58.39 11.39 21.65 0.25 -58.14 16 24 Si 0.98 46.32 29.55 68.60 2.03 48.35 16 25 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 26 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 27 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 28 C 0.13 5.10 8.38 86.49 0.72 5.83 16 29 C -0.18 -3.56 6.32 -18.61 -0.12 -3.68 16 30 C -0.07 -0.81 10.17 71.24 0.72 -0.09 16 31 H 0.09 0.88 8.14 -2.39 -0.02 0.87 16 32 H 0.10 0.79 7.04 -2.39 -0.02 0.77 16 33 H 0.07 0.81 8.14 -2.39 -0.02 0.80 16 34 H 0.15 1.62 8.06 -2.91 -0.02 1.59 16 35 H 0.16 1.38 8.06 -2.91 -0.02 1.35 16 36 H 0.15 2.00 6.38 -2.91 -0.02 1.99 16 37 H 0.41 8.31 6.62 -92.71 -0.61 7.70 16 38 H 0.07 1.82 8.14 -2.38 -0.02 1.80 16 39 H 0.06 1.91 8.09 -2.38 -0.02 1.89 16 40 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.11 3.49 8.14 -2.39 -0.02 3.47 16 42 H 0.01 0.49 8.03 -2.39 -0.02 0.47 16 43 H 0.05 2.57 7.16 -2.39 -0.02 2.55 16 44 H 0.25 14.74 8.31 -92.70 -0.77 13.96 16 45 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 46 H 0.03 1.17 8.10 -2.39 -0.02 1.15 16 47 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 48 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 49 H 0.08 0.63 7.06 -2.39 -0.02 0.62 16 Total: -1.00 -76.97 399.28 2.44 -74.53 By element: Atomic # 1 Polarization: 26.49 SS G_CDS: -0.33 Total: 26.16 kcal Atomic # 6 Polarization: -2.93 SS G_CDS: 6.42 Total: 3.49 kcal Atomic # 7 Polarization: -125.28 SS G_CDS: -5.62 Total: -130.90 kcal Atomic # 8 Polarization: -21.56 SS G_CDS: -0.06 Total: -21.62 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 2.03 Total: 48.35 kcal Total: -76.97 2.44 -74.53 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969986196.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.891 kcal (2) G-P(sol) polarization free energy of solvation -76.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds