Wall clock time and date at job start Wed Apr 1 2020 00:41:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36545 * 125.07881 * 2 1 4 4 C 1.34547 * 109.90415 * 179.97438 * 3 2 1 5 5 C 1.45996 * 107.00293 * 0.02562 * 4 3 2 6 6 C 1.37802 * 125.06981 * 179.97438 * 2 1 3 7 7 C 1.38982 * 133.37941 * 0.03349 * 6 2 1 8 8 C 1.38050 * 120.27041 * 180.02562 * 7 6 2 9 9 C 1.38276 * 120.88354 * 359.71903 * 8 7 6 10 10 C 1.39309 * 120.20101 * 0.55960 * 9 8 7 11 11 C 1.47375 * 120.34673 * 179.71961 * 10 9 8 12 12 O 1.21611 * 120.00531 * 179.73248 * 11 10 9 13 13 N 1.34779 * 120.00052 * 359.72495 * 11 10 9 14 14 C 1.46495 * 120.00474 * 179.97438 * 13 11 10 15 15 H 1.09000 * 110.88801 * 322.57936 * 14 13 11 16 16 C 1.54914 * 111.00127 * 86.45568 * 14 13 11 17 17 N 1.47426 * 104.82992 * 81.07022 * 16 14 13 18 18 C 1.36936 * 125.64583 * 204.09666 * 17 16 14 19 19 H 1.07997 * 119.99931 * 180.02562 * 18 17 16 20 20 C 1.38819 * 120.00094 * 0.03301 * 18 17 16 21 21 N 1.31618 * 119.99956 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99883 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47090 * 90.00295 * 22 20 18 24 24 H 1.48500 * 109.46944 * 210.00181 * 22 20 18 25 25 H 1.48498 * 109.47226 * 330.00384 * 22 20 18 26 26 C 1.47018 * 108.70517 * 24.12623 * 17 16 14 27 27 C 1.54325 * 107.40412 * 358.86539 * 26 17 16 28 28 C 1.53004 * 110.72125 * 96.24436 * 27 26 17 29 29 C 1.52995 * 110.72304 * 219.52316 * 27 26 17 30 30 H 1.09002 * 109.47050 * 270.03827 * 1 2 3 31 31 H 1.08997 * 109.47036 * 30.03556 * 1 2 3 32 32 H 1.08992 * 109.47427 * 150.04209 * 1 2 3 33 33 H 1.08001 * 125.05034 * 359.95198 * 3 2 1 34 34 H 1.07992 * 126.50185 * 179.97438 * 4 3 2 35 35 H 1.07996 * 119.85916 * 0.02670 * 7 6 2 36 36 H 1.08002 * 119.55631 * 180.02562 * 8 7 6 37 37 H 1.08001 * 119.89860 * 180.28752 * 9 8 7 38 38 H 0.97004 * 119.99485 * 0.02562 * 13 11 10 39 39 H 1.08999 * 110.37121 * 322.22757 * 16 14 13 40 40 H 1.09001 * 110.45739 * 199.95369 * 16 14 13 41 41 H 0.96998 * 120.00119 * 179.97438 * 21 20 18 42 42 H 1.09002 * 109.88241 * 118.36067 * 26 17 16 43 43 H 1.09000 * 109.88049 * 239.37196 * 26 17 16 44 44 H 1.08999 * 109.47052 * 61.45720 * 28 27 26 45 45 H 1.08993 * 109.46847 * 181.45696 * 28 27 26 46 46 H 1.09005 * 109.46970 * 301.45810 * 28 27 26 47 47 H 1.08999 * 109.47083 * 58.54334 * 29 27 26 48 48 H 1.09002 * 109.47293 * 178.54343 * 29 27 26 49 49 H 1.09000 * 109.47062 * 298.54438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2497 1.1174 0.0000 4 6 3.5482 0.7652 0.0006 5 6 3.5948 -0.6940 0.0003 6 6 2.2567 -1.1278 0.0005 7 6 1.9784 -2.4895 0.0005 8 6 3.0072 -3.4100 0.0017 9 6 4.3275 -2.9990 -0.0030 10 6 4.6386 -1.6411 0.0028 11 6 6.0447 -1.1994 0.0040 12 8 6.3092 -0.0124 0.0041 13 7 7.0374 -2.1110 0.0051 14 6 8.4350 -1.6721 0.0058 15 1 8.5639 -0.7843 -0.6134 16 6 8.9370 -1.4197 1.4495 17 7 9.2817 -2.7559 1.9682 18 6 9.3219 -3.1131 3.2895 19 1 9.5876 -4.1221 3.5683 20 6 9.0212 -2.1782 4.2707 21 7 8.6968 -0.9488 3.9309 22 14 9.0768 -2.6653 6.0732 23 1 10.4400 -2.4222 6.6098 24 1 8.0931 -1.8551 6.8354 25 1 8.7416 -4.1057 6.2073 26 6 9.5757 -3.6413 0.8319 27 6 9.3762 -2.8183 -0.4582 28 6 10.7102 -2.2557 -0.9532 29 6 8.7085 -3.6657 -1.5431 30 1 -0.3633 0.0007 1.0277 31 1 -0.3633 0.8896 -0.5144 32 1 -0.3634 -0.8903 -0.5131 33 1 1.8826 2.1331 -0.0007 34 1 4.3955 1.4349 0.0003 35 1 0.9531 -2.8288 -0.0004 36 1 2.7778 -4.4654 0.0012 37 1 5.1198 -3.7329 -0.0068 38 1 6.8264 -3.0578 0.0047 39 1 8.1478 -0.9706 2.0525 40 1 9.8178 -0.7777 1.4398 41 1 8.4862 -0.2956 4.6164 42 1 10.6060 -3.9921 0.8922 43 1 8.8937 -4.4916 0.8384 44 1 11.3870 -3.0776 -1.1865 45 1 10.5423 -1.6578 -1.8489 46 1 11.1515 -1.6309 -0.1766 47 1 7.7471 -4.0290 -1.1800 48 1 8.5540 -3.0583 -2.4349 49 1 9.3486 -4.5135 -1.7872 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000977348659.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:41:40 Heat of formation + Delta-G solvation = 62.618848 kcal Electronic energy + Delta-G solvation = -30466.971142 eV Core-core repulsion = 26588.607250 eV Total energy + Delta-G solvation = -3878.363893 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.29123 -39.53828 -37.85097 -36.57971 -33.75648 -32.98271 -32.76172 -30.67745 -30.45847 -28.94831 -27.96001 -26.73825 -26.21442 -25.53942 -23.92365 -22.86957 -21.51480 -21.13625 -20.10722 -19.45777 -18.55370 -17.20856 -16.74481 -16.53679 -16.01669 -15.62644 -15.43085 -15.08867 -14.61274 -14.18242 -13.99072 -13.85691 -13.66467 -13.54563 -13.15631 -13.11424 -12.81681 -12.70800 -12.52560 -12.35642 -12.10215 -11.86456 -11.70406 -11.58572 -11.30389 -11.28275 -11.19790 -11.08734 -10.92044 -10.72687 -10.32127 -10.13256 -9.86094 -9.71951 -9.61803 -9.50023 -9.21711 -8.59933 -8.22998 -8.15804 -7.53971 -6.72942 -5.54948 -2.98069 0.84895 1.62334 2.76425 2.81442 3.34449 3.44748 3.49104 3.52034 3.76692 4.25875 4.55131 4.56567 4.69896 4.86053 4.93313 4.99980 5.04089 5.11422 5.18626 5.30245 5.35229 5.35504 5.52189 5.59626 5.65048 5.69976 5.82681 5.86945 5.93339 6.00512 6.09859 6.16681 6.23047 6.25644 6.33684 6.45304 6.50043 6.50241 6.54934 6.68745 6.75962 6.76669 6.84742 6.89317 7.09757 7.22300 7.30540 7.59572 7.70014 7.98143 8.18888 8.48880 8.88613 9.29864 9.91637 10.55993 11.47364 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.010548 B = 0.003733 C = 0.003204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2653.943088 B = 7498.770361 C = 8736.372070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.493 5.493 3 C 0.038 3.962 4 C -0.176 4.176 5 C -0.059 4.059 6 C 0.086 3.914 7 C -0.112 4.112 8 C -0.107 4.107 9 C -0.111 4.111 10 C -0.074 4.074 11 C 0.557 3.443 12 O -0.535 6.535 13 N -0.698 5.698 14 C 0.127 3.873 15 H 0.085 0.915 16 C 0.146 3.854 17 N -0.600 5.600 18 C -0.225 4.225 19 H 0.076 0.924 20 C -0.008 4.008 21 N -0.915 5.915 22 Si 0.911 3.089 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.282 1.282 26 C 0.143 3.857 27 C -0.088 4.088 28 C -0.128 4.128 29 C -0.131 4.131 30 H 0.066 0.934 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.168 0.832 34 H 0.159 0.841 35 H 0.118 0.882 36 H 0.129 0.871 37 H 0.126 0.874 38 H 0.394 0.606 39 H 0.114 0.886 40 H 0.019 0.981 41 H 0.252 0.748 42 H 0.023 0.977 43 H 0.020 0.980 44 H 0.054 0.946 45 H 0.050 0.950 46 H 0.063 0.937 47 H 0.051 0.949 48 H 0.053 0.947 49 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.483 -2.012 -13.067 19.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.177 5.177 3 C -0.086 4.086 4 C -0.200 4.200 5 C -0.064 4.064 6 C -0.019 4.019 7 C -0.133 4.133 8 C -0.126 4.126 9 C -0.131 4.131 10 C -0.078 4.078 11 C 0.344 3.656 12 O -0.413 6.413 13 N -0.349 5.349 14 C 0.021 3.979 15 H 0.103 0.897 16 C 0.020 3.980 17 N -0.326 5.326 18 C -0.354 4.354 19 H 0.093 0.907 20 C -0.204 4.204 21 N -0.563 5.563 22 Si 0.741 3.259 23 H -0.217 1.217 24 H -0.218 1.218 25 H -0.208 1.208 26 C 0.017 3.983 27 C -0.089 4.089 28 C -0.186 4.186 29 C -0.189 4.189 30 H 0.085 0.915 31 H 0.099 0.901 32 H 0.096 0.904 33 H 0.185 0.815 34 H 0.176 0.824 35 H 0.136 0.864 36 H 0.147 0.853 37 H 0.144 0.856 38 H 0.230 0.770 39 H 0.132 0.868 40 H 0.037 0.963 41 H 0.063 0.937 42 H 0.040 0.960 43 H 0.038 0.962 44 H 0.073 0.927 45 H 0.069 0.931 46 H 0.082 0.918 47 H 0.070 0.930 48 H 0.072 0.928 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -14.658 -1.023 -12.846 19.517 hybrid contribution -0.103 -0.752 1.147 1.375 sum -14.761 -1.775 -11.699 18.918 Atomic orbital electron populations 1.21872 0.77467 1.03861 1.02781 1.43700 1.05613 1.04299 1.64133 1.21902 0.90523 0.90947 1.05181 1.21983 0.95907 0.93198 1.08954 1.18972 0.90698 0.93678 1.03084 1.18161 0.90011 0.88348 1.05426 1.20048 0.99399 0.89127 1.04723 1.20659 0.91807 0.98986 1.01181 1.21108 0.96834 0.94288 1.00882 1.19501 0.92553 0.92666 1.03032 1.17976 0.84653 0.86055 0.76920 1.90724 1.84356 1.16417 1.49753 1.45747 1.05970 1.09222 1.73956 1.22529 0.79004 0.95711 1.00651 0.89724 1.22309 0.99728 0.87149 0.88767 1.44445 1.80482 1.07012 1.00689 1.19008 1.39891 0.95892 0.80590 0.90651 1.24782 1.01964 0.95743 0.97910 1.69809 1.52617 1.02831 1.31007 0.86139 0.77273 0.77356 0.85101 1.21712 1.21758 1.20795 1.21393 0.97462 0.92850 0.86574 1.21877 0.95569 0.95983 0.95435 1.21681 0.95541 1.00642 1.00691 1.21717 0.99906 0.99309 0.97928 0.91502 0.90072 0.90384 0.81461 0.82367 0.86399 0.85321 0.85632 0.76987 0.86818 0.96288 0.93728 0.95957 0.96190 0.92725 0.93108 0.91764 0.93004 0.92759 0.92703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.57 11.02 59.84 0.66 1.23 16 2 N -0.49 -5.79 3.17 -121.82 -0.39 -6.18 16 3 C 0.04 0.47 11.29 -16.76 -0.19 0.28 16 4 C -0.18 -2.82 10.24 -37.78 -0.39 -3.20 16 5 C -0.06 -1.00 6.15 -104.85 -0.64 -1.64 16 6 C 0.09 1.22 6.80 -83.99 -0.57 0.65 16 7 C -0.11 -1.35 9.93 -39.37 -0.39 -1.74 16 8 C -0.11 -1.29 9.99 -39.64 -0.40 -1.69 16 9 C -0.11 -1.60 9.53 -39.17 -0.37 -1.97 16 10 C -0.07 -1.30 5.89 -104.76 -0.62 -1.92 16 11 C 0.56 11.22 7.76 -12.54 -0.10 11.12 16 12 O -0.53 -12.32 14.83 5.27 0.08 -12.24 16 13 N -0.70 -13.10 4.63 -52.69 -0.24 -13.35 16 14 C 0.13 2.53 2.57 -65.65 -0.17 2.36 16 15 H 0.08 1.72 7.63 -51.93 -0.40 1.33 16 16 C 0.15 3.69 5.27 -2.53 -0.01 3.67 16 17 N -0.60 -15.30 3.39 -170.07 -0.58 -15.88 16 18 C -0.23 -6.34 10.27 -15.06 -0.15 -6.49 16 19 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 20 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 21 N -0.91 -27.74 10.09 55.49 0.56 -27.18 16 22 Si 0.91 22.66 29.55 -169.99 -5.02 17.63 16 23 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 24 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 25 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 26 C 0.14 2.93 6.40 -3.07 -0.02 2.91 16 27 C -0.09 -1.49 0.81 -152.54 -0.12 -1.61 16 28 C -0.13 -1.98 8.44 37.16 0.31 -1.67 16 29 C -0.13 -1.77 8.17 37.15 0.30 -1.47 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.08 0.39 8.13 -51.93 -0.42 -0.03 16 32 H 0.08 0.44 8.09 -51.93 -0.42 0.02 16 33 H 0.17 1.40 8.06 -52.49 -0.42 0.98 16 34 H 0.16 2.71 7.16 -52.49 -0.38 2.33 16 35 H 0.12 1.05 8.05 -52.49 -0.42 0.63 16 36 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 37 H 0.13 1.60 6.40 -52.49 -0.34 1.26 16 38 H 0.39 6.60 4.84 -40.82 -0.20 6.40 16 39 H 0.11 3.37 5.87 -51.93 -0.30 3.06 16 40 H 0.02 0.52 7.73 -51.93 -0.40 0.12 16 41 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 42 H 0.02 0.46 7.84 -51.93 -0.41 0.05 16 43 H 0.02 0.40 7.82 -51.93 -0.41 -0.01 16 44 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 46 H 0.06 1.12 7.46 -51.93 -0.39 0.74 16 47 H 0.05 0.67 6.21 -51.93 -0.32 0.35 16 48 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 49 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 389.25 15.07 5.87 5.87 Total: -1.00 -35.12 389.25 -10.00 -45.12 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: -7.31 Total: 7.70 kcal Atomic # 6 Polarization: 1.46 SS G_CDS: -2.97 Total: -1.50 kcal Atomic # 7 Polarization: -61.93 SS G_CDS: -0.65 Total: -62.58 kcal Atomic # 8 Polarization: -12.32 SS G_CDS: 0.08 Total: -12.24 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.63 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -35.12 -10.00 -45.12 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977348659.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.742 kcal (2) G-P(sol) polarization free energy of solvation -35.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds