Wall clock time and date at job start Wed Apr 1 2020 00:41:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36545 * 125.07881 * 2 1 4 4 C 1.34547 * 109.90415 * 179.97438 * 3 2 1 5 5 C 1.45996 * 107.00293 * 0.02562 * 4 3 2 6 6 C 1.37802 * 125.06981 * 179.97438 * 2 1 3 7 7 C 1.38982 * 133.37941 * 0.03349 * 6 2 1 8 8 C 1.38050 * 120.27041 * 180.02562 * 7 6 2 9 9 C 1.38276 * 120.88354 * 359.71903 * 8 7 6 10 10 C 1.39309 * 120.20101 * 0.55960 * 9 8 7 11 11 C 1.47375 * 120.34673 * 179.71961 * 10 9 8 12 12 O 1.21611 * 120.00531 * 179.73248 * 11 10 9 13 13 N 1.34779 * 120.00052 * 359.72495 * 11 10 9 14 14 C 1.46495 * 120.00474 * 179.97438 * 13 11 10 15 15 H 1.09000 * 110.88801 * 322.57936 * 14 13 11 16 16 C 1.54914 * 111.00127 * 86.45568 * 14 13 11 17 17 N 1.47426 * 104.82992 * 81.07022 * 16 14 13 18 18 C 1.36936 * 125.64583 * 204.09666 * 17 16 14 19 19 H 1.07997 * 119.99931 * 180.02562 * 18 17 16 20 20 C 1.38819 * 120.00094 * 0.03301 * 18 17 16 21 21 N 1.31618 * 119.99956 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99883 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47090 * 90.00295 * 22 20 18 24 24 H 1.48500 * 109.46944 * 210.00181 * 22 20 18 25 25 H 1.48498 * 109.47226 * 330.00384 * 22 20 18 26 26 C 1.47018 * 108.70517 * 24.12623 * 17 16 14 27 27 C 1.54325 * 107.40412 * 358.86539 * 26 17 16 28 28 C 1.53004 * 110.72125 * 96.24436 * 27 26 17 29 29 C 1.52995 * 110.72304 * 219.52316 * 27 26 17 30 30 H 1.09002 * 109.47050 * 270.03827 * 1 2 3 31 31 H 1.08997 * 109.47036 * 30.03556 * 1 2 3 32 32 H 1.08992 * 109.47427 * 150.04209 * 1 2 3 33 33 H 1.08001 * 125.05034 * 359.95198 * 3 2 1 34 34 H 1.07992 * 126.50185 * 179.97438 * 4 3 2 35 35 H 1.07996 * 119.85916 * 0.02670 * 7 6 2 36 36 H 1.08002 * 119.55631 * 180.02562 * 8 7 6 37 37 H 1.08001 * 119.89860 * 180.28752 * 9 8 7 38 38 H 0.97004 * 119.99485 * 0.02562 * 13 11 10 39 39 H 1.08999 * 110.37121 * 322.22757 * 16 14 13 40 40 H 1.09001 * 110.45739 * 199.95369 * 16 14 13 41 41 H 0.96998 * 120.00119 * 179.97438 * 21 20 18 42 42 H 1.09002 * 109.88241 * 118.36067 * 26 17 16 43 43 H 1.09000 * 109.88049 * 239.37196 * 26 17 16 44 44 H 1.08999 * 109.47052 * 61.45720 * 28 27 26 45 45 H 1.08993 * 109.46847 * 181.45696 * 28 27 26 46 46 H 1.09005 * 109.46970 * 301.45810 * 28 27 26 47 47 H 1.08999 * 109.47083 * 58.54334 * 29 27 26 48 48 H 1.09002 * 109.47293 * 178.54343 * 29 27 26 49 49 H 1.09000 * 109.47062 * 298.54438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2497 1.1174 0.0000 4 6 3.5482 0.7652 0.0006 5 6 3.5948 -0.6940 0.0003 6 6 2.2567 -1.1278 0.0005 7 6 1.9784 -2.4895 0.0005 8 6 3.0072 -3.4100 0.0017 9 6 4.3275 -2.9990 -0.0030 10 6 4.6386 -1.6411 0.0028 11 6 6.0447 -1.1994 0.0040 12 8 6.3092 -0.0124 0.0041 13 7 7.0374 -2.1110 0.0051 14 6 8.4350 -1.6721 0.0058 15 1 8.5639 -0.7843 -0.6134 16 6 8.9370 -1.4197 1.4495 17 7 9.2817 -2.7559 1.9682 18 6 9.3219 -3.1131 3.2895 19 1 9.5876 -4.1221 3.5683 20 6 9.0212 -2.1782 4.2707 21 7 8.6968 -0.9488 3.9309 22 14 9.0768 -2.6653 6.0732 23 1 10.4400 -2.4222 6.6098 24 1 8.0931 -1.8551 6.8354 25 1 8.7416 -4.1057 6.2073 26 6 9.5757 -3.6413 0.8319 27 6 9.3762 -2.8183 -0.4582 28 6 10.7102 -2.2557 -0.9532 29 6 8.7085 -3.6657 -1.5431 30 1 -0.3633 0.0007 1.0277 31 1 -0.3633 0.8896 -0.5144 32 1 -0.3634 -0.8903 -0.5131 33 1 1.8826 2.1331 -0.0007 34 1 4.3955 1.4349 0.0003 35 1 0.9531 -2.8288 -0.0004 36 1 2.7778 -4.4654 0.0012 37 1 5.1198 -3.7329 -0.0068 38 1 6.8264 -3.0578 0.0047 39 1 8.1478 -0.9706 2.0525 40 1 9.8178 -0.7777 1.4398 41 1 8.4862 -0.2956 4.6164 42 1 10.6060 -3.9921 0.8922 43 1 8.8937 -4.4916 0.8384 44 1 11.3870 -3.0776 -1.1865 45 1 10.5423 -1.6578 -1.8489 46 1 11.1515 -1.6309 -0.1766 47 1 7.7471 -4.0290 -1.1800 48 1 8.5540 -3.0583 -2.4349 49 1 9.3486 -4.5135 -1.7872 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000977348659.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:41:39 Heat of formation + Delta-G solvation = 40.658890 kcal Electronic energy + Delta-G solvation = -30467.923398 eV Core-core repulsion = 26588.607250 eV Total energy + Delta-G solvation = -3879.316148 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.31942 -41.08624 -39.37716 -37.71126 -35.67032 -34.50995 -33.73330 -32.60283 -31.61351 -30.00174 -29.60686 -28.01633 -27.39917 -27.01542 -25.46051 -24.30307 -22.63511 -22.46566 -21.72535 -20.91397 -19.96332 -18.69737 -18.38807 -17.76757 -17.22876 -17.08537 -16.60124 -16.27276 -16.05986 -15.77301 -15.58473 -15.31858 -15.12991 -14.75913 -14.61429 -14.16786 -14.00060 -13.75851 -13.65849 -13.61525 -13.56999 -13.10697 -13.05250 -13.01784 -12.83954 -12.66174 -12.61030 -12.53877 -12.38359 -12.17822 -12.09525 -11.77227 -11.74200 -11.42450 -11.34066 -10.83386 -10.68876 -10.59535 -9.92024 -9.18111 -8.84216 -8.57459 -7.74013 -5.19689 -0.27757 0.59516 1.42977 1.45789 1.54405 1.70707 1.91826 2.02041 2.31937 2.49197 3.02353 3.35130 3.56811 3.67488 3.72396 3.91703 3.95412 3.98338 3.99700 4.07559 4.20294 4.27946 4.41965 4.49497 4.52720 4.55365 4.65803 4.75167 4.76195 4.83461 4.87399 4.88892 4.93272 4.97234 5.04903 5.11491 5.13435 5.21150 5.31885 5.33981 5.43162 5.46208 5.49373 5.54181 5.72103 5.74347 5.76243 5.85970 6.19563 6.32819 6.42938 6.68562 7.09695 7.37346 7.80424 8.44621 9.26291 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.010548 B = 0.003733 C = 0.003204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2653.943088 B = 7498.770361 C = 8736.372070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.487 5.487 3 C 0.072 3.928 4 C -0.238 4.238 5 C -0.093 4.093 6 C 0.070 3.930 7 C -0.093 4.093 8 C -0.110 4.110 9 C -0.105 4.105 10 C -0.121 4.121 11 C 0.549 3.451 12 O -0.581 6.581 13 N -0.689 5.689 14 C 0.137 3.863 15 H 0.075 0.925 16 C 0.156 3.844 17 N -0.617 5.617 18 C -0.233 4.233 19 H 0.086 0.914 20 C -0.070 4.070 21 N -0.949 5.949 22 Si 0.977 3.023 23 H -0.287 1.287 24 H -0.301 1.301 25 H -0.263 1.263 26 C 0.138 3.862 27 C -0.073 4.073 28 C -0.126 4.126 29 C -0.125 4.125 30 H 0.078 0.922 31 H 0.106 0.894 32 H 0.096 0.904 33 H 0.208 0.792 34 H 0.126 0.874 35 H 0.160 0.840 36 H 0.170 0.830 37 H 0.138 0.862 38 H 0.405 0.595 39 H 0.066 0.934 40 H -0.016 1.016 41 H 0.241 0.759 42 H 0.028 0.972 43 H 0.036 0.964 44 H 0.080 0.920 45 H 0.070 0.930 46 H 0.032 0.968 47 H 0.057 0.943 48 H 0.066 0.934 49 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.432 -5.248 -14.450 23.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.170 5.170 3 C -0.054 4.054 4 C -0.263 4.263 5 C -0.099 4.099 6 C -0.037 4.037 7 C -0.113 4.113 8 C -0.129 4.129 9 C -0.125 4.125 10 C -0.124 4.124 11 C 0.338 3.662 12 O -0.462 6.462 13 N -0.341 5.341 14 C 0.031 3.969 15 H 0.093 0.907 16 C 0.029 3.971 17 N -0.343 5.343 18 C -0.362 4.362 19 H 0.104 0.896 20 C -0.263 4.263 21 N -0.599 5.599 22 Si 0.806 3.194 23 H -0.214 1.214 24 H -0.228 1.228 25 H -0.188 1.188 26 C 0.013 3.987 27 C -0.074 4.074 28 C -0.184 4.184 29 C -0.182 4.182 30 H 0.096 0.904 31 H 0.124 0.876 32 H 0.115 0.885 33 H 0.225 0.775 34 H 0.144 0.856 35 H 0.178 0.822 36 H 0.187 0.813 37 H 0.155 0.845 38 H 0.243 0.757 39 H 0.084 0.916 40 H 0.001 0.999 41 H 0.051 0.949 42 H 0.046 0.954 43 H 0.054 0.946 44 H 0.099 0.901 45 H 0.089 0.911 46 H 0.051 0.949 47 H 0.076 0.924 48 H 0.085 0.915 49 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -17.625 -4.344 -14.259 23.083 hybrid contribution 0.724 0.278 1.566 1.747 sum -16.901 -4.065 -12.693 21.524 Atomic orbital electron populations 1.22282 0.74021 1.06161 1.04239 1.44060 1.07490 1.03190 1.62232 1.22365 0.89273 0.92765 1.01036 1.21888 0.97093 0.93289 1.14053 1.19346 0.92438 0.94121 1.03968 1.18453 0.89108 0.89974 1.06115 1.20578 1.01491 0.87890 1.01333 1.21117 0.90480 1.01091 1.00234 1.21372 0.98769 0.92922 0.99407 1.19450 0.90797 0.94554 1.07641 1.18642 0.86251 0.85598 0.75698 1.90684 1.85252 1.18340 1.51919 1.45621 1.05152 1.09665 1.73627 1.22202 0.80472 0.97246 0.96969 0.90686 1.21911 0.96796 0.86850 0.91518 1.44672 1.80495 1.07741 1.01379 1.19462 1.38486 0.96192 0.82024 0.89589 1.25663 1.02544 0.95772 1.02283 1.70151 1.54289 1.03949 1.31537 0.85084 0.76831 0.77696 0.79792 1.21397 1.22769 1.18757 1.21651 0.97853 0.92895 0.86301 1.21871 0.95728 0.94508 0.95273 1.21691 0.94908 1.01353 1.00409 1.21697 1.00254 0.99584 0.96685 0.90354 0.87552 0.88506 0.77498 0.85555 0.82204 0.81298 0.84453 0.75676 0.91608 0.99860 0.94944 0.95422 0.94635 0.90086 0.91118 0.94858 0.92442 0.91486 0.90044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.69 11.02 127.77 1.41 2.10 16 2 N -0.49 -10.32 3.17 -539.33 -1.71 -12.03 16 3 C 0.07 1.73 11.29 83.11 0.94 2.66 16 4 C -0.24 -8.30 10.24 23.44 0.24 -8.06 16 5 C -0.09 -3.33 6.15 -20.01 -0.12 -3.45 16 6 C 0.07 1.87 6.80 38.98 0.27 2.13 16 7 C -0.09 -1.89 9.93 22.40 0.22 -1.67 16 8 C -0.11 -2.30 9.99 22.23 0.22 -2.08 16 9 C -0.10 -2.94 9.53 22.54 0.21 -2.72 16 10 C -0.12 -4.46 5.89 -19.95 -0.12 -4.58 16 11 C 0.55 23.96 7.76 86.65 0.67 24.63 16 12 O -0.58 -29.86 14.83 -4.07 -0.06 -29.92 16 13 N -0.69 -27.11 4.63 -438.85 -2.03 -29.14 16 14 C 0.14 5.80 2.57 46.47 0.12 5.92 16 15 H 0.08 3.30 7.63 -2.39 -0.02 3.28 16 16 C 0.16 8.48 5.27 86.86 0.46 8.94 16 17 N -0.62 -32.55 3.39 -691.98 -2.35 -34.90 16 18 C -0.23 -13.38 10.27 84.04 0.86 -12.51 16 19 H 0.09 4.65 7.83 -2.91 -0.02 4.63 16 20 C -0.07 -4.20 5.49 84.86 0.47 -3.73 16 21 N -0.95 -61.46 10.09 21.65 0.22 -61.24 16 22 Si 0.98 47.93 29.55 68.60 2.03 49.96 16 23 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 24 H -0.30 -15.08 7.11 99.48 0.71 -14.37 16 25 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 26 C 0.14 5.54 6.40 86.73 0.56 6.10 16 27 C -0.07 -2.42 0.81 -50.91 -0.04 -2.47 16 28 C -0.13 -3.80 8.44 71.98 0.61 -3.19 16 29 C -0.12 -3.01 8.17 71.98 0.59 -2.42 16 30 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.11 0.53 8.13 -2.39 -0.02 0.51 16 32 H 0.10 0.61 8.09 -2.39 -0.02 0.59 16 33 H 0.21 3.04 8.06 -2.91 -0.02 3.02 16 34 H 0.13 5.04 7.16 -2.91 -0.02 5.02 16 35 H 0.16 1.90 8.05 -2.91 -0.02 1.88 16 36 H 0.17 2.15 8.06 -2.91 -0.02 2.13 16 37 H 0.14 3.32 6.40 -2.91 -0.02 3.30 16 38 H 0.40 13.65 4.84 -92.71 -0.45 13.20 16 39 H 0.07 4.26 5.87 -2.39 -0.01 4.25 16 40 H -0.02 -0.98 7.73 -2.39 -0.02 -1.00 16 41 H 0.24 15.39 8.31 -92.71 -0.77 14.62 16 42 H 0.03 1.10 7.84 -2.39 -0.02 1.08 16 43 H 0.04 1.34 7.82 -2.39 -0.02 1.32 16 44 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 45 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 46 H 0.03 1.19 7.46 -2.38 -0.02 1.17 16 47 H 0.06 1.33 6.21 -2.39 -0.01 1.32 16 48 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 49 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -86.75 389.25 4.16 -82.58 By element: Atomic # 1 Polarization: 28.59 SS G_CDS: 0.51 Total: 29.11 kcal Atomic # 6 Polarization: -1.98 SS G_CDS: 7.56 Total: 5.58 kcal Atomic # 7 Polarization: -131.43 SS G_CDS: -5.87 Total: -137.30 kcal Atomic # 8 Polarization: -29.86 SS G_CDS: -0.06 Total: -29.92 kcal Atomic # 14 Polarization: 47.93 SS G_CDS: 2.03 Total: 49.96 kcal Total: -86.75 4.16 -82.58 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977348659.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.243 kcal (2) G-P(sol) polarization free energy of solvation -86.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.584 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds