Wall clock time and date at job start Wed Apr 1 2020 00:42:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 110.78001 * 2 1 4 4 C 1.54325 * 110.72044 * 123.23796 * 2 1 3 5 5 N 1.47019 * 107.40733 * 140.47932 * 4 2 1 6 6 C 1.36936 * 125.65464 * 181.09843 * 5 4 2 7 7 H 1.08001 * 119.99894 * 161.98102 * 6 5 4 8 8 C 1.38808 * 119.99834 * 341.98559 * 6 5 4 9 9 N 1.31622 * 120.00079 * 156.30065 * 8 6 5 10 10 Si 1.86806 * 120.00152 * 336.30226 * 8 6 5 11 11 H 1.48507 * 109.46933 * 84.67395 * 10 8 6 12 12 H 1.48498 * 109.47130 * 204.67578 * 10 8 6 13 13 H 1.48499 * 109.46689 * 324.67567 * 10 8 6 14 14 C 1.47752 * 108.52407 * 1.18080 * 5 4 2 15 15 C 1.54904 * 104.84336 * 335.74954 * 14 5 4 16 16 H 1.08998 * 111.03641 * 155.18196 * 15 14 5 17 17 N 1.46495 * 111.00425 * 279.02366 * 15 14 5 18 18 C 1.34780 * 119.99791 * 267.19429 * 17 15 14 19 19 O 1.21280 * 119.99889 * 359.97438 * 18 17 15 20 20 C 1.50697 * 119.99985 * 180.02562 * 18 17 15 21 21 C 1.50704 * 109.47004 * 179.97438 * 20 18 17 22 22 C 1.34235 * 126.50217 * 265.02019 * 21 20 18 23 23 N 1.36826 * 109.92980 * 180.02562 * 22 21 20 24 24 H 0.97002 * 125.06400 * 179.97438 * 23 22 21 25 25 C 1.37687 * 109.87471 * 0.02562 * 23 22 21 26 26 C 1.39129 * 133.50351 * 180.02562 * 25 23 22 27 27 C 1.37747 * 119.77517 * 179.97438 * 26 25 23 28 28 C 1.38832 * 120.66766 * 359.97438 * 27 26 25 29 29 C 1.36621 * 120.52920 * 0.02562 * 28 27 26 30 30 C 1.39640 * 119.76441 * 359.69510 * 29 28 27 31 31 H 1.08996 * 109.47573 * 298.21280 * 1 2 3 32 32 H 1.08998 * 109.47056 * 58.21803 * 1 2 3 33 33 H 1.09006 * 109.47118 * 178.21550 * 1 2 3 34 34 H 1.09005 * 109.46769 * 181.78297 * 3 2 1 35 35 H 1.08997 * 109.46449 * 301.78077 * 3 2 1 36 36 H 1.08993 * 109.46843 * 61.78220 * 3 2 1 37 37 H 1.09002 * 109.87986 * 259.97618 * 4 2 1 38 38 H 1.08996 * 109.88214 * 20.98260 * 4 2 1 39 39 H 0.97001 * 119.99918 * 179.97438 * 9 8 6 40 40 H 1.08995 * 110.28915 * 216.94508 * 14 5 4 41 41 H 1.09002 * 110.52594 * 94.67417 * 14 5 4 42 42 H 0.96997 * 120.00278 * 87.19893 * 17 15 14 43 43 H 1.09001 * 109.47196 * 299.99848 * 20 18 17 44 44 H 1.09003 * 109.47473 * 60.00124 * 20 18 17 45 45 H 1.07997 * 125.03587 * 0.02562 * 22 21 20 46 46 H 1.07998 * 120.11430 * 359.94763 * 26 25 23 47 47 H 1.07997 * 119.66471 * 180.02562 * 27 26 25 48 48 H 1.07998 * 119.73833 * 179.97438 * 28 27 26 49 49 H 1.08004 * 120.12346 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0728 1.4305 0.0000 4 6 2.0759 -0.7912 1.2073 5 7 3.2437 -1.5535 0.7418 6 6 4.0005 -2.4006 1.5066 7 1 4.6429 -3.1277 1.0323 8 6 3.9418 -2.3247 2.8913 9 7 4.2629 -3.3714 3.6220 10 14 3.4071 -0.7371 3.7180 11 1 1.9244 -0.6905 3.7879 12 1 3.9695 -0.6803 5.0912 13 1 3.9024 0.4213 2.9319 14 6 3.4632 -1.2498 -0.6874 15 6 2.0790 -0.7956 -1.2137 16 1 2.1844 -0.1521 -2.0872 17 7 1.2272 -1.9489 -1.5143 18 6 1.2026 -2.4619 -2.7604 19 8 1.8853 -1.9685 -3.6329 20 6 0.3259 -3.6480 -3.0698 21 6 0.4806 -4.0218 -4.5215 22 6 -0.3050 -3.6270 -5.5358 23 7 0.1429 -4.1672 -6.7103 24 1 -0.2633 -4.0254 -7.5797 25 6 1.2557 -4.9431 -6.4743 26 6 2.0865 -5.7005 -7.2939 27 6 3.1498 -6.3835 -6.7460 28 6 3.4026 -6.3240 -5.3822 29 6 2.5996 -5.5863 -4.5591 30 6 1.5195 -4.8812 -5.0941 31 1 -0.3634 0.4858 0.9055 32 1 -0.3633 0.5413 -0.8736 33 1 -0.3634 -1.0272 -0.0320 34 1 3.1621 1.4057 -0.0320 35 1 1.6956 1.9621 -0.8736 36 1 1.7474 1.9425 0.9055 37 1 2.3740 -0.1023 1.9977 38 1 1.3120 -1.4738 1.5793 39 1 4.2222 -3.3182 4.5897 40 1 3.7959 -2.1426 -1.2167 41 1 4.1935 -0.4485 -0.8001 42 1 0.6808 -2.3433 -0.8166 43 1 0.6203 -4.4905 -2.4439 44 1 -0.7147 -3.3928 -2.8696 45 1 -1.1635 -2.9789 -5.4391 46 1 1.8981 -5.7532 -8.3561 47 1 3.7938 -6.9706 -7.3839 48 1 4.2403 -6.8658 -4.9685 49 1 2.8021 -5.5449 -3.4990 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000977506101.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:42:05 Heat of formation + Delta-G solvation = 52.704867 kcal Electronic energy + Delta-G solvation = -30011.812576 eV Core-core repulsion = 26133.018781 eV Total energy + Delta-G solvation = -3878.793795 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.31971 -39.84906 -38.09745 -36.88818 -33.90244 -33.13746 -32.94631 -31.37587 -30.29892 -29.30346 -28.54189 -27.34421 -26.49317 -25.91012 -23.46697 -22.86056 -21.78137 -21.03189 -20.12339 -19.42114 -18.85336 -17.85183 -17.13424 -16.63184 -16.42086 -15.85383 -15.50671 -15.16298 -14.82008 -14.49294 -14.14390 -14.03357 -13.80352 -13.68811 -13.59938 -13.23622 -13.08212 -12.73239 -12.62496 -12.59488 -12.24876 -12.03323 -11.98333 -11.67455 -11.58509 -11.47468 -11.37887 -11.13249 -10.82711 -10.80443 -10.73272 -10.41231 -10.23144 -9.76706 -9.75979 -9.42543 -9.28086 -8.78187 -8.47121 -8.21246 -7.66692 -7.02283 -5.93507 -3.21425 1.13265 1.64912 2.57342 2.98406 3.05361 3.34263 3.48276 3.51708 3.60573 3.97295 4.55815 4.68008 4.73756 4.77697 4.88183 4.93123 5.08500 5.14695 5.16839 5.17917 5.20524 5.30292 5.44932 5.52711 5.54547 5.60217 5.66448 5.70754 5.80991 5.82036 5.89818 5.93640 6.00300 6.09608 6.12780 6.21199 6.26768 6.40808 6.43600 6.47121 6.58667 6.62456 6.65323 6.68932 6.76610 6.77530 6.99183 7.15591 7.45809 7.71287 7.89435 8.32633 8.59570 8.85587 9.70884 10.20031 11.23060 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.015009 B = 0.003032 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.047639 B = 9233.192361 C =10449.147147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.087 4.087 3 C -0.132 4.132 4 C 0.127 3.873 5 N -0.606 5.606 6 C -0.237 4.237 7 H 0.092 0.908 8 C 0.021 3.979 9 N -0.907 5.907 10 Si 0.886 3.114 11 H -0.287 1.287 12 H -0.306 1.306 13 H -0.279 1.279 14 C 0.124 3.876 15 C 0.141 3.859 16 H 0.095 0.905 17 N -0.709 5.709 18 C 0.513 3.487 19 O -0.538 6.538 20 C -0.067 4.067 21 C -0.144 4.144 22 C 0.058 3.942 23 N -0.596 5.596 24 H 0.413 0.587 25 C 0.094 3.906 26 C -0.135 4.135 27 C -0.101 4.101 28 C -0.148 4.148 29 C -0.063 4.063 30 C -0.089 4.089 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.062 0.938 35 H 0.054 0.946 36 H 0.056 0.944 37 H 0.028 0.972 38 H 0.039 0.961 39 H 0.262 0.738 40 H 0.052 0.948 41 H 0.033 0.967 42 H 0.401 0.599 43 H 0.101 0.899 44 H 0.097 0.903 45 H 0.167 0.833 46 H 0.116 0.884 47 H 0.122 0.878 48 H 0.122 0.878 49 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.387 -0.261 -19.225 22.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.089 4.089 3 C -0.190 4.190 4 C 0.003 3.997 5 N -0.333 5.333 6 C -0.364 4.364 7 H 0.109 0.891 8 C -0.177 4.177 9 N -0.551 5.551 10 Si 0.718 3.282 11 H -0.215 1.215 12 H -0.234 1.234 13 H -0.206 1.206 14 C -0.003 4.003 15 C 0.036 3.964 16 H 0.113 0.887 17 N -0.361 5.361 18 C 0.299 3.701 19 O -0.414 6.414 20 C -0.108 4.108 21 C -0.152 4.152 22 C -0.068 4.068 23 N -0.199 5.199 24 H 0.250 0.750 25 C -0.012 4.012 26 C -0.156 4.156 27 C -0.120 4.120 28 C -0.168 4.168 29 C -0.082 4.082 30 C -0.093 4.093 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.045 0.955 38 H 0.057 0.943 39 H 0.072 0.928 40 H 0.070 0.930 41 H 0.050 0.950 42 H 0.236 0.764 43 H 0.120 0.880 44 H 0.115 0.885 45 H 0.184 0.816 46 H 0.134 0.866 47 H 0.140 0.860 48 H 0.140 0.860 49 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -11.878 -0.010 -19.743 23.040 hybrid contribution -0.585 0.862 0.701 1.256 sum -12.462 0.852 -19.041 22.773 Atomic orbital electron populations 1.21707 0.94011 1.01633 1.01502 1.21863 0.95537 0.95695 0.95773 1.21731 1.01767 0.94169 1.01316 1.21772 0.90358 0.93639 0.93980 1.44830 1.29918 1.51957 1.06601 1.18644 1.21195 1.08780 0.87805 0.89071 1.24943 0.99690 0.97233 0.95838 1.69859 1.52288 1.27592 1.05395 0.86928 0.77568 0.86181 0.77551 1.21467 1.23417 1.20588 1.22070 0.93531 0.98502 0.86174 1.22091 0.91034 0.86737 0.96586 0.88696 1.45883 1.46174 1.32949 1.11062 1.20569 0.82848 0.84543 0.82120 1.90688 1.43120 1.61153 1.46450 1.19953 1.00346 0.97237 0.93248 1.19557 0.97827 1.04002 0.93807 1.21474 1.00837 1.00352 0.84150 1.41621 1.25678 1.43367 1.09248 0.75021 1.18222 0.90660 0.97441 0.94912 1.19959 0.96631 1.00739 0.98284 1.20774 0.96758 0.99213 0.95252 1.20638 1.00754 1.01772 0.93586 1.20352 0.92986 0.94886 0.99966 1.19000 0.97405 1.00827 0.92108 0.92527 0.92620 0.92508 0.91872 0.92697 0.92464 0.95474 0.94314 0.92787 0.92982 0.94980 0.76370 0.88050 0.88479 0.81566 0.86605 0.86002 0.86046 0.86030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.67 8.16 37.15 0.30 -1.36 16 2 C -0.09 -1.40 0.80 -152.67 -0.12 -1.52 16 3 C -0.13 -1.95 8.44 37.16 0.31 -1.64 16 4 C 0.13 2.66 4.32 -3.07 -0.01 2.65 16 5 N -0.61 -14.37 3.22 -169.82 -0.55 -14.91 16 6 C -0.24 -6.69 10.58 -15.06 -0.16 -6.85 16 7 H 0.09 2.76 8.06 -52.49 -0.42 2.33 16 8 C 0.02 0.62 5.43 -17.43 -0.09 0.53 16 9 N -0.91 -27.89 13.97 55.49 0.78 -27.12 16 10 Si 0.89 22.68 24.39 -169.99 -4.15 18.54 16 11 H -0.29 -7.04 6.84 56.52 0.39 -6.66 16 12 H -0.31 -7.98 7.11 56.52 0.40 -7.58 16 13 H -0.28 -7.07 6.87 56.52 0.39 -6.68 16 14 C 0.12 2.53 6.63 -2.35 -0.02 2.51 16 15 C 0.14 2.35 2.67 -65.79 -0.18 2.17 16 16 H 0.10 1.58 7.44 -51.93 -0.39 1.19 16 17 N -0.71 -10.52 4.51 -51.73 -0.23 -10.76 16 18 C 0.51 7.72 7.82 -10.99 -0.09 7.63 16 19 O -0.54 -10.10 15.67 5.56 0.09 -10.01 16 20 C -0.07 -0.78 6.23 -29.03 -0.18 -0.96 16 21 C -0.14 -1.83 4.81 -102.71 -0.49 -2.33 16 22 C 0.06 0.60 11.73 -16.73 -0.20 0.40 16 23 N -0.60 -5.83 6.07 -10.65 -0.06 -5.90 16 24 H 0.41 2.60 8.96 -40.82 -0.37 2.24 16 25 C 0.09 1.17 7.28 -83.99 -0.61 0.56 16 26 C -0.14 -1.48 10.08 -39.43 -0.40 -1.88 16 27 C -0.10 -1.10 10.01 -39.54 -0.40 -1.49 16 28 C -0.15 -1.81 9.97 -39.95 -0.40 -2.21 16 29 C -0.06 -0.88 10.05 -39.64 -0.40 -1.28 16 30 C -0.09 -1.26 6.35 -105.14 -0.67 -1.92 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.67 6.34 -51.93 -0.33 0.34 16 34 H 0.06 1.02 7.45 -51.93 -0.39 0.63 16 35 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.03 0.63 3.23 -51.93 -0.17 0.46 16 38 H 0.04 0.83 7.82 -51.93 -0.41 0.43 16 39 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 40 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.03 0.66 7.72 -51.93 -0.40 0.26 16 42 H 0.40 5.46 7.13 -40.82 -0.29 5.17 16 43 H 0.10 1.13 8.14 -51.93 -0.42 0.70 16 44 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 45 H 0.17 1.15 8.06 -52.49 -0.42 0.73 16 46 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 47 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 48 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 49 H 0.12 1.68 8.06 -52.48 -0.42 1.26 16 LS Contribution 389.75 15.07 5.87 5.87 Total: -1.00 -35.52 389.75 -9.44 -44.96 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: -7.39 Total: 6.33 kcal Atomic # 6 Polarization: -3.20 SS G_CDS: -3.79 Total: -6.99 kcal Atomic # 7 Polarization: -58.62 SS G_CDS: -0.07 Total: -58.69 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: 0.09 Total: -10.01 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -4.15 Total: 18.54 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -35.52 -9.44 -44.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977506101.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.662 kcal (2) G-P(sol) polarization free energy of solvation -35.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds