Wall clock time and date at job start Wed Apr 1 2020 00:42:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 110.78001 * 2 1 4 4 C 1.54325 * 110.72044 * 123.23796 * 2 1 3 5 5 N 1.47019 * 107.40733 * 140.47932 * 4 2 1 6 6 C 1.36936 * 125.65464 * 181.09843 * 5 4 2 7 7 H 1.08001 * 119.99894 * 161.98102 * 6 5 4 8 8 C 1.38808 * 119.99834 * 341.98559 * 6 5 4 9 9 N 1.31622 * 120.00079 * 156.30065 * 8 6 5 10 10 Si 1.86806 * 120.00152 * 336.30226 * 8 6 5 11 11 H 1.48507 * 109.46933 * 84.67395 * 10 8 6 12 12 H 1.48498 * 109.47130 * 204.67578 * 10 8 6 13 13 H 1.48499 * 109.46689 * 324.67567 * 10 8 6 14 14 C 1.47752 * 108.52407 * 1.18080 * 5 4 2 15 15 C 1.54904 * 104.84336 * 335.74954 * 14 5 4 16 16 H 1.08998 * 111.03641 * 155.18196 * 15 14 5 17 17 N 1.46495 * 111.00425 * 279.02366 * 15 14 5 18 18 C 1.34780 * 119.99791 * 267.19429 * 17 15 14 19 19 O 1.21280 * 119.99889 * 359.97438 * 18 17 15 20 20 C 1.50697 * 119.99985 * 180.02562 * 18 17 15 21 21 C 1.50704 * 109.47004 * 179.97438 * 20 18 17 22 22 C 1.34235 * 126.50217 * 265.02019 * 21 20 18 23 23 N 1.36826 * 109.92980 * 180.02562 * 22 21 20 24 24 H 0.97002 * 125.06400 * 179.97438 * 23 22 21 25 25 C 1.37687 * 109.87471 * 0.02562 * 23 22 21 26 26 C 1.39129 * 133.50351 * 180.02562 * 25 23 22 27 27 C 1.37747 * 119.77517 * 179.97438 * 26 25 23 28 28 C 1.38832 * 120.66766 * 359.97438 * 27 26 25 29 29 C 1.36621 * 120.52920 * 0.02562 * 28 27 26 30 30 C 1.39640 * 119.76441 * 359.69510 * 29 28 27 31 31 H 1.08996 * 109.47573 * 298.21280 * 1 2 3 32 32 H 1.08998 * 109.47056 * 58.21803 * 1 2 3 33 33 H 1.09006 * 109.47118 * 178.21550 * 1 2 3 34 34 H 1.09005 * 109.46769 * 181.78297 * 3 2 1 35 35 H 1.08997 * 109.46449 * 301.78077 * 3 2 1 36 36 H 1.08993 * 109.46843 * 61.78220 * 3 2 1 37 37 H 1.09002 * 109.87986 * 259.97618 * 4 2 1 38 38 H 1.08996 * 109.88214 * 20.98260 * 4 2 1 39 39 H 0.97001 * 119.99918 * 179.97438 * 9 8 6 40 40 H 1.08995 * 110.28915 * 216.94508 * 14 5 4 41 41 H 1.09002 * 110.52594 * 94.67417 * 14 5 4 42 42 H 0.96997 * 120.00278 * 87.19893 * 17 15 14 43 43 H 1.09001 * 109.47196 * 299.99848 * 20 18 17 44 44 H 1.09003 * 109.47473 * 60.00124 * 20 18 17 45 45 H 1.07997 * 125.03587 * 0.02562 * 22 21 20 46 46 H 1.07998 * 120.11430 * 359.94763 * 26 25 23 47 47 H 1.07997 * 119.66471 * 180.02562 * 27 26 25 48 48 H 1.07998 * 119.73833 * 179.97438 * 28 27 26 49 49 H 1.08004 * 120.12346 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0728 1.4305 0.0000 4 6 2.0759 -0.7912 1.2073 5 7 3.2437 -1.5535 0.7418 6 6 4.0005 -2.4006 1.5066 7 1 4.6429 -3.1277 1.0323 8 6 3.9418 -2.3247 2.8913 9 7 4.2629 -3.3714 3.6220 10 14 3.4071 -0.7371 3.7180 11 1 1.9244 -0.6905 3.7879 12 1 3.9695 -0.6803 5.0912 13 1 3.9024 0.4213 2.9319 14 6 3.4632 -1.2498 -0.6874 15 6 2.0790 -0.7956 -1.2137 16 1 2.1844 -0.1521 -2.0872 17 7 1.2272 -1.9489 -1.5143 18 6 1.2026 -2.4619 -2.7604 19 8 1.8853 -1.9685 -3.6329 20 6 0.3259 -3.6480 -3.0698 21 6 0.4806 -4.0218 -4.5215 22 6 -0.3050 -3.6270 -5.5358 23 7 0.1429 -4.1672 -6.7103 24 1 -0.2633 -4.0254 -7.5797 25 6 1.2557 -4.9431 -6.4743 26 6 2.0865 -5.7005 -7.2939 27 6 3.1498 -6.3835 -6.7460 28 6 3.4026 -6.3240 -5.3822 29 6 2.5996 -5.5863 -4.5591 30 6 1.5195 -4.8812 -5.0941 31 1 -0.3634 0.4858 0.9055 32 1 -0.3633 0.5413 -0.8736 33 1 -0.3634 -1.0272 -0.0320 34 1 3.1621 1.4057 -0.0320 35 1 1.6956 1.9621 -0.8736 36 1 1.7474 1.9425 0.9055 37 1 2.3740 -0.1023 1.9977 38 1 1.3120 -1.4738 1.5793 39 1 4.2222 -3.3182 4.5897 40 1 3.7959 -2.1426 -1.2167 41 1 4.1935 -0.4485 -0.8001 42 1 0.6808 -2.3433 -0.8166 43 1 0.6203 -4.4905 -2.4439 44 1 -0.7147 -3.3928 -2.8696 45 1 -1.1635 -2.9789 -5.4391 46 1 1.8981 -5.7532 -8.3561 47 1 3.7938 -6.9706 -7.3839 48 1 4.2403 -6.8658 -4.9685 49 1 2.8021 -5.5449 -3.4990 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000977506101.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:42:03 Heat of formation + Delta-G solvation = 29.087986 kcal Electronic energy + Delta-G solvation = -30012.836681 eV Core-core repulsion = 26133.018781 eV Total energy + Delta-G solvation = -3879.817900 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.17523 -41.19202 -39.46160 -37.75192 -35.67513 -34.41464 -33.93111 -33.34999 -31.27719 -30.22320 -29.97212 -28.36193 -27.72059 -27.52909 -25.11538 -23.73428 -22.65780 -22.59731 -21.49118 -20.58834 -20.02406 -19.09061 -18.66915 -17.89214 -17.36462 -17.28286 -16.95633 -16.36097 -15.97471 -15.71278 -15.43818 -15.33250 -15.03508 -14.95124 -14.78693 -14.63310 -14.40725 -14.12609 -13.78951 -13.63035 -13.53805 -13.37883 -13.17219 -12.96925 -12.88198 -12.86221 -12.54938 -12.52554 -12.31641 -12.25678 -11.80470 -11.73188 -11.68750 -11.64395 -11.16415 -10.88064 -10.76663 -10.42868 -9.96895 -9.09669 -9.04307 -8.52494 -8.19269 -5.44007 0.24588 0.72875 1.27914 1.38080 1.48104 1.68137 1.81141 2.30708 2.39826 2.47690 3.01479 3.02795 3.30443 3.45805 3.77018 3.83216 3.93358 3.96736 4.03117 4.18204 4.24209 4.29085 4.36185 4.41006 4.46639 4.53931 4.63990 4.70763 4.71677 4.75537 4.83967 4.84768 4.86077 4.93105 4.96664 5.03375 5.05044 5.05775 5.19982 5.25692 5.31126 5.46239 5.58780 5.63318 5.67227 5.72774 5.79672 5.86547 6.08314 6.27793 6.68771 6.75961 6.79759 7.41425 7.52300 8.09075 9.01160 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.015009 B = 0.003032 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.047639 B = 9233.192361 C =10449.147147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.074 4.074 3 C -0.133 4.133 4 C 0.121 3.879 5 N -0.618 5.618 6 C -0.233 4.233 7 H 0.051 0.949 8 C -0.033 4.033 9 N -0.954 5.954 10 Si 0.952 3.048 11 H -0.265 1.265 12 H -0.313 1.313 13 H -0.275 1.275 14 C 0.120 3.880 15 C 0.156 3.844 16 H 0.103 0.897 17 N -0.705 5.705 18 C 0.514 3.486 19 O -0.577 6.577 20 C -0.058 4.058 21 C -0.185 4.185 22 C 0.077 3.923 23 N -0.584 5.584 24 H 0.431 0.569 25 C 0.076 3.924 26 C -0.132 4.132 27 C -0.109 4.109 28 C -0.157 4.157 29 C -0.098 4.098 30 C -0.120 4.120 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.064 0.936 34 H 0.041 0.959 35 H 0.085 0.915 36 H 0.065 0.935 37 H 0.016 0.984 38 H 0.035 0.965 39 H 0.263 0.737 40 H 0.026 0.974 41 H 0.032 0.968 42 H 0.408 0.592 43 H 0.097 0.903 44 H 0.138 0.862 45 H 0.206 0.794 46 H 0.147 0.853 47 H 0.150 0.850 48 H 0.130 0.870 49 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.765 1.790 -21.232 26.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.076 4.076 3 C -0.191 4.191 4 C -0.003 4.003 5 N -0.345 5.345 6 C -0.362 4.362 7 H 0.069 0.931 8 C -0.228 4.228 9 N -0.601 5.601 10 Si 0.783 3.217 11 H -0.191 1.191 12 H -0.242 1.242 13 H -0.201 1.201 14 C -0.006 4.006 15 C 0.049 3.951 16 H 0.121 0.879 17 N -0.356 5.356 18 C 0.302 3.698 19 O -0.456 6.456 20 C -0.098 4.098 21 C -0.192 4.192 22 C -0.050 4.050 23 N -0.188 5.188 24 H 0.271 0.729 25 C -0.032 4.032 26 C -0.152 4.152 27 C -0.128 4.128 28 C -0.176 4.176 29 C -0.117 4.117 30 C -0.125 4.125 31 H 0.084 0.916 32 H 0.098 0.902 33 H 0.082 0.918 34 H 0.060 0.940 35 H 0.104 0.896 36 H 0.084 0.916 37 H 0.033 0.967 38 H 0.053 0.947 39 H 0.072 0.928 40 H 0.044 0.956 41 H 0.050 0.950 42 H 0.245 0.755 43 H 0.116 0.884 44 H 0.156 0.844 45 H 0.223 0.777 46 H 0.165 0.835 47 H 0.168 0.832 48 H 0.148 0.852 49 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -15.302 2.053 -21.791 26.706 hybrid contribution 0.548 0.135 1.203 1.329 sum -14.754 2.188 -20.588 25.423 Atomic orbital electron populations 1.21716 0.90750 1.02808 1.03180 1.21857 0.97959 0.95453 0.92297 1.21769 1.00510 0.93517 1.03279 1.21949 0.88987 0.93388 0.96025 1.44839 1.30519 1.51687 1.07454 1.18515 1.20809 1.08521 0.88362 0.93104 1.25559 1.00912 0.99997 0.96353 1.69985 1.54886 1.29593 1.05592 0.85849 0.78389 0.81754 0.75743 1.19098 1.24162 1.20119 1.22179 0.96553 0.97373 0.84479 1.21865 0.88849 0.87357 0.97028 0.87902 1.45875 1.45718 1.32599 1.11456 1.21225 0.82419 0.84771 0.81394 1.90664 1.44791 1.62539 1.47617 1.19946 1.01643 0.95202 0.92995 1.19797 0.98862 1.05656 0.94910 1.22068 1.00672 0.98853 0.83393 1.41659 1.24713 1.42253 1.10177 0.72904 1.18477 0.91818 0.98340 0.94516 1.20367 0.95771 0.99390 0.99701 1.21120 0.97370 0.99546 0.94810 1.20887 1.00713 1.01445 0.94550 1.20412 0.94703 0.97071 0.99537 1.19394 0.97927 1.01527 0.93648 0.91552 0.90181 0.91755 0.93969 0.89637 0.91555 0.96684 0.94708 0.92840 0.95601 0.95017 0.75494 0.88430 0.84442 0.77682 0.83549 0.83188 0.85203 0.87872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.69 8.16 71.98 0.59 -2.10 16 2 C -0.07 -2.18 0.80 -50.99 -0.04 -2.22 16 3 C -0.13 -3.51 8.44 71.98 0.61 -2.90 16 4 C 0.12 4.89 4.32 86.73 0.37 5.26 16 5 N -0.62 -29.89 3.22 -691.18 -2.22 -32.11 16 6 C -0.23 -13.76 10.58 84.03 0.89 -12.87 16 7 H 0.05 3.32 8.06 -2.91 -0.02 3.29 16 8 C -0.03 -2.00 5.43 84.86 0.46 -1.53 16 9 N -0.95 -60.80 13.97 21.65 0.30 -60.50 16 10 Si 0.95 47.49 24.39 68.60 1.67 49.16 16 11 H -0.27 -12.15 6.84 99.48 0.68 -11.47 16 12 H -0.31 -15.83 7.11 99.48 0.71 -15.12 16 13 H -0.27 -13.36 6.87 99.48 0.68 -12.68 16 14 C 0.12 5.05 6.63 86.79 0.57 5.62 16 15 C 0.16 4.97 2.67 46.38 0.12 5.10 16 16 H 0.10 3.22 7.44 -2.39 -0.02 3.21 16 17 N -0.71 -20.07 4.51 -435.98 -1.97 -22.04 16 18 C 0.51 15.05 7.82 87.66 0.69 15.74 16 19 O -0.58 -21.60 15.67 -3.03 -0.05 -21.64 16 20 C -0.06 -1.26 6.23 29.10 0.18 -1.08 16 21 C -0.18 -4.51 4.81 -18.63 -0.09 -4.60 16 22 C 0.08 1.37 11.73 83.00 0.97 2.34 16 23 N -0.58 -9.94 6.07 -187.62 -1.14 -11.08 16 24 H 0.43 4.03 8.96 -92.71 -0.83 3.20 16 25 C 0.08 1.79 7.28 39.03 0.28 2.08 16 26 C -0.13 -2.67 10.08 22.37 0.23 -2.45 16 27 C -0.11 -2.30 10.01 22.30 0.22 -2.07 16 28 C -0.16 -4.01 9.97 22.03 0.22 -3.79 16 29 C -0.10 -2.96 10.05 22.23 0.22 -2.74 16 30 C -0.12 -3.46 6.35 -20.20 -0.13 -3.58 16 31 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.06 1.27 6.34 -2.38 -0.02 1.26 16 34 H 0.04 1.28 7.45 -2.38 -0.02 1.26 16 35 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.02 0.68 3.23 -2.39 -0.01 0.67 16 38 H 0.03 1.44 7.82 -2.39 -0.02 1.42 16 39 H 0.26 15.86 8.31 -92.71 -0.77 15.09 16 40 H 0.03 1.19 8.14 -2.39 -0.02 1.18 16 41 H 0.03 1.34 7.72 -2.39 -0.02 1.32 16 42 H 0.41 10.44 7.13 -92.71 -0.66 9.78 16 43 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 44 H 0.14 1.81 8.14 -2.39 -0.02 1.79 16 45 H 0.21 1.87 8.06 -2.91 -0.02 1.84 16 46 H 0.15 1.96 8.06 -2.91 -0.02 1.94 16 47 H 0.15 2.18 8.06 -2.91 -0.02 2.16 16 48 H 0.13 2.88 8.06 -2.91 -0.02 2.86 16 49 H 0.10 3.27 8.06 -2.91 -0.02 3.24 16 Total: -1.00 -82.02 389.75 2.41 -79.61 By element: Atomic # 1 Polarization: 24.98 SS G_CDS: -0.56 Total: 24.42 kcal Atomic # 6 Polarization: -12.19 SS G_CDS: 6.38 Total: -5.81 kcal Atomic # 7 Polarization: -120.70 SS G_CDS: -5.03 Total: -125.73 kcal Atomic # 8 Polarization: -21.60 SS G_CDS: -0.05 Total: -21.64 kcal Atomic # 14 Polarization: 47.49 SS G_CDS: 1.67 Total: 49.16 kcal Total: -82.02 2.41 -79.61 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977506101.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.694 kcal (2) G-P(sol) polarization free energy of solvation -82.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds