Wall clock time and date at job start Wed Apr 1 2020 00:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 110.77955 * 2 1 4 4 C 1.54324 * 110.71890 * 123.23889 * 2 1 3 5 5 N 1.47020 * 107.39983 * 140.47837 * 4 2 1 6 6 C 1.36946 * 125.64749 * 181.10549 * 5 4 2 7 7 H 1.08000 * 119.99920 * 359.97438 * 6 5 4 8 8 C 1.38814 * 119.99867 * 180.02562 * 6 5 4 9 9 N 1.31617 * 119.99930 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 119.99829 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.47348 * 59.99174 * 10 8 6 12 12 H 1.48492 * 109.47116 * 179.97438 * 10 8 6 13 13 H 1.48507 * 109.46964 * 299.99484 * 10 8 6 14 14 C 1.47743 * 108.53125 * 1.18235 * 5 4 2 15 15 C 1.54909 * 104.83995 * 335.74644 * 14 5 4 16 16 H 1.09006 * 111.00238 * 155.16698 * 15 14 5 17 17 N 1.46494 * 111.04301 * 279.00829 * 15 14 5 18 18 C 1.34780 * 119.99752 * 267.21576 * 17 15 14 19 19 O 1.21278 * 120.00442 * 359.97438 * 18 17 15 20 20 C 1.50703 * 119.99547 * 179.97438 * 18 17 15 21 21 N 1.46503 * 109.46612 * 179.97438 * 20 18 17 22 22 C 1.36830 * 125.06285 * 264.69368 * 21 20 18 23 23 C 1.34245 * 109.92980 * 179.88182 * 22 21 20 24 24 C 1.46484 * 106.99330 * 0.37521 * 23 22 21 25 25 C 1.39637 * 134.02770 * 179.79803 * 24 23 22 26 26 C 1.36625 * 119.76237 * 179.97438 * 25 24 23 27 27 C 1.38828 * 120.52771 * 359.97438 * 26 25 24 28 28 C 1.37751 * 120.66942 * 0.02562 * 27 26 25 29 29 C 1.37690 * 125.06409 * 85.00601 * 21 20 18 30 30 H 1.08993 * 109.46725 * 298.21689 * 1 2 3 31 31 H 1.09002 * 109.46930 * 58.21518 * 1 2 3 32 32 H 1.08996 * 109.47021 * 178.21404 * 1 2 3 33 33 H 1.09003 * 109.46999 * 181.78711 * 3 2 1 34 34 H 1.08997 * 109.47276 * 301.78407 * 3 2 1 35 35 H 1.08996 * 109.47248 * 61.78898 * 3 2 1 36 36 H 1.09002 * 109.88322 * 259.97367 * 4 2 1 37 37 H 1.09000 * 109.88025 * 20.98532 * 4 2 1 38 38 H 0.96998 * 119.99524 * 180.02562 * 9 8 6 39 39 H 1.09003 * 110.29227 * 216.94505 * 14 5 4 40 40 H 1.08996 * 110.53057 * 94.67717 * 14 5 4 41 41 H 0.96994 * 120.00233 * 87.21085 * 17 15 14 42 42 H 1.08993 * 109.47416 * 299.99904 * 20 18 17 43 43 H 1.08996 * 109.47139 * 60.00603 * 20 18 17 44 44 H 1.08002 * 125.03838 * 0.02562 * 22 21 20 45 45 H 1.08001 * 126.50006 * 180.14889 * 23 22 21 46 46 H 1.08003 * 120.11547 * 359.94749 * 25 24 23 47 47 H 1.07998 * 119.73252 * 179.97438 * 26 25 24 48 48 H 1.08006 * 119.66451 * 180.02562 * 27 26 25 49 49 H 1.08000 * 120.10977 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0729 1.4305 0.0000 4 6 2.0760 -0.7912 1.2073 5 7 3.2438 -1.5534 0.7416 6 6 4.0005 -2.4008 1.5064 7 1 3.7556 -2.5528 2.5472 8 6 5.0830 -3.0633 0.9441 9 7 5.3817 -2.8776 -0.3242 10 14 6.1155 -4.2185 1.9874 11 1 5.2583 -5.3120 2.5116 12 1 7.2026 -4.7969 1.1575 13 1 6.7064 -3.4653 3.1228 14 6 3.4633 -1.2498 -0.6875 15 6 2.0790 -0.7955 -1.2138 16 1 2.1850 -0.1518 -2.0871 17 7 1.2266 -1.9483 -1.5150 18 6 1.2022 -2.4609 -2.7612 19 8 1.8855 -1.9677 -3.6334 20 6 0.3258 -3.6471 -3.0709 21 7 0.4762 -4.0101 -4.4823 22 6 -0.3474 -3.5946 -5.4929 23 6 0.0701 -4.1045 -6.6624 24 6 1.2529 -4.9199 -6.3760 25 6 2.1132 -5.6909 -7.1604 26 6 3.1569 -6.3501 -6.5750 27 6 3.3696 -6.2593 -5.2061 28 6 2.5332 -5.5043 -4.4136 29 6 1.4638 -4.8250 -4.9885 30 1 -0.3632 0.4859 0.9055 31 1 -0.3633 0.5413 -0.8736 32 1 -0.3633 -1.0271 -0.0320 33 1 3.1621 1.4057 -0.0320 34 1 1.6957 1.9622 -0.8735 35 1 1.7476 1.9425 0.9055 36 1 2.3741 -0.1024 1.9978 37 1 1.3120 -1.4739 1.5792 38 1 6.1379 -3.3409 -0.7172 39 1 3.7960 -2.1426 -1.2169 40 1 4.1936 -0.4486 -0.8002 41 1 0.6799 -2.3426 -0.8176 42 1 0.6203 -4.4897 -2.4453 43 1 -0.7148 -3.3921 -2.8707 44 1 -1.2049 -2.9499 -5.3685 45 1 -0.3825 -3.9467 -7.6302 46 1 1.9538 -5.7662 -8.2259 47 1 3.8218 -6.9467 -7.1820 48 1 4.1993 -6.7859 -4.7579 49 1 2.7068 -5.4403 -3.3496 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000977628453.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:43:07 Heat of formation + Delta-G solvation = 60.688615 kcal Electronic energy + Delta-G solvation = -30445.229892 eV Core-core repulsion = 26566.782298 eV Total energy + Delta-G solvation = -3878.447594 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.25343 -39.66991 -37.98379 -36.71575 -33.87493 -33.16834 -32.71715 -30.75414 -30.34275 -28.76057 -28.34759 -27.22252 -26.22454 -25.63679 -23.40875 -22.52514 -21.47551 -20.92661 -20.12290 -19.79710 -18.75674 -17.15654 -17.07868 -16.71301 -16.33257 -15.73789 -15.25186 -14.98057 -14.60837 -14.36914 -13.96552 -13.86475 -13.71328 -13.59318 -13.34699 -13.25067 -12.98001 -12.74189 -12.49740 -12.30979 -12.04055 -11.95076 -11.79404 -11.46262 -11.40076 -11.34550 -11.21426 -11.03569 -10.80458 -10.65866 -10.47191 -10.26461 -10.03601 -9.87308 -9.74627 -9.71086 -9.35683 -8.73613 -8.44647 -7.98643 -7.49352 -6.86231 -5.67247 -3.10621 1.33157 1.82532 2.66477 2.87685 2.92897 3.36776 3.41681 3.43829 3.59902 4.14705 4.44965 4.69535 4.78920 4.88727 4.91390 4.97776 5.03677 5.18640 5.21672 5.23187 5.32905 5.47921 5.56176 5.58822 5.67452 5.74032 5.80000 5.81679 5.96298 5.97386 6.04807 6.07286 6.11851 6.19172 6.26052 6.34822 6.43825 6.54085 6.64219 6.67105 6.67245 6.80650 6.91180 6.93147 6.95200 7.34021 7.40367 7.44204 7.57252 7.79974 7.90603 8.33048 8.54965 9.17131 9.78989 10.43311 11.35545 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.009780 B = 0.004047 C = 0.003045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2862.326647 B = 6916.464934 C = 9193.056761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.087 4.087 3 C -0.129 4.129 4 C 0.143 3.857 5 N -0.601 5.601 6 C -0.228 4.228 7 H 0.076 0.924 8 C -0.007 4.007 9 N -0.917 5.917 10 Si 0.911 3.089 11 H -0.286 1.286 12 H -0.290 1.290 13 H -0.286 1.286 14 C 0.146 3.854 15 C 0.125 3.875 16 H 0.087 0.913 17 N -0.698 5.698 18 C 0.492 3.508 19 O -0.524 6.524 20 C 0.090 3.910 21 N -0.465 5.465 22 C 0.059 3.941 23 C -0.208 4.208 24 C -0.110 4.110 25 C -0.078 4.078 26 C -0.148 4.148 27 C -0.102 4.102 28 C -0.117 4.117 29 C 0.112 3.888 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.051 0.949 33 H 0.063 0.937 34 H 0.050 0.950 35 H 0.055 0.945 36 H 0.023 0.977 37 H 0.021 0.979 38 H 0.253 0.747 39 H 0.112 0.888 40 H 0.021 0.979 41 H 0.397 0.603 42 H 0.114 0.886 43 H 0.115 0.885 44 H 0.164 0.836 45 H 0.144 0.856 46 H 0.117 0.883 47 H 0.118 0.882 48 H 0.123 0.877 49 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.969 -1.077 -7.681 15.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.088 4.088 3 C -0.186 4.186 4 C 0.017 3.983 5 N -0.327 5.327 6 C -0.356 4.356 7 H 0.094 0.906 8 C -0.203 4.203 9 N -0.564 5.564 10 Si 0.742 3.258 11 H -0.212 1.212 12 H -0.216 1.216 13 H -0.212 1.212 14 C 0.021 3.979 15 C 0.019 3.981 16 H 0.105 0.895 17 N -0.349 5.349 18 C 0.275 3.725 19 O -0.399 6.399 20 C -0.036 4.036 21 N -0.148 5.148 22 C -0.066 4.066 23 C -0.233 4.233 24 C -0.114 4.114 25 C -0.097 4.097 26 C -0.167 4.167 27 C -0.121 4.121 28 C -0.137 4.137 29 C 0.006 3.994 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.041 0.959 37 H 0.039 0.961 38 H 0.064 0.936 39 H 0.129 0.871 40 H 0.038 0.962 41 H 0.231 0.769 42 H 0.132 0.868 43 H 0.133 0.867 44 H 0.181 0.819 45 H 0.162 0.838 46 H 0.135 0.865 47 H 0.136 0.864 48 H 0.141 0.859 49 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -13.328 -0.750 -8.007 15.566 hybrid contribution 0.425 -0.575 1.166 1.368 sum -12.903 -1.326 -6.841 14.664 Atomic orbital electron populations 1.21707 0.94635 1.01139 1.01260 1.21845 0.94822 0.95751 0.96401 1.21689 1.01932 0.94114 1.00907 1.21402 0.90331 0.92969 0.93637 1.44521 1.30749 1.50093 1.07325 1.18976 1.06713 1.17083 0.92832 0.90622 1.24780 0.98652 1.00527 0.96322 1.69786 1.29937 1.45861 1.10856 0.86213 0.79902 0.80644 0.79060 1.21231 1.21554 1.21226 1.22340 0.89186 1.01329 0.85083 1.22515 0.93199 0.86014 0.96328 0.89482 1.45743 1.45863 1.33143 1.10162 1.20682 0.83576 0.85026 0.83202 1.90760 1.42297 1.60513 1.46359 1.21598 1.01669 0.98470 0.81834 1.43353 1.24399 1.41153 1.05881 1.21702 0.96895 1.01099 0.86877 1.21570 0.99136 1.05142 0.97437 1.19163 0.98113 1.01927 0.92197 1.20182 0.94286 0.96469 0.98744 1.20581 0.98979 1.02272 0.94909 1.20792 0.98736 0.98920 0.93644 1.20130 0.94252 0.99223 1.00122 1.18178 0.92281 0.95946 0.92965 0.92715 0.92919 0.92965 0.91765 0.93122 0.92633 0.95907 0.96108 0.93571 0.87056 0.96153 0.76850 0.86800 0.86708 0.81861 0.83838 0.86456 0.86386 0.85898 0.86255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.58 8.16 37.16 0.30 -1.28 16 2 C -0.09 -1.37 0.80 -152.67 -0.12 -1.50 16 3 C -0.13 -1.90 8.44 37.16 0.31 -1.59 16 4 C 0.14 2.74 6.40 -3.06 -0.02 2.72 16 5 N -0.60 -14.52 3.41 -169.81 -0.58 -15.10 16 6 C -0.23 -6.13 10.28 -15.05 -0.15 -6.28 16 7 H 0.08 1.97 7.83 -52.49 -0.41 1.56 16 8 C -0.01 -0.18 5.49 -17.43 -0.10 -0.28 16 9 N -0.92 -26.65 10.11 55.49 0.56 -26.09 16 10 Si 0.91 21.81 29.55 -169.99 -5.02 16.78 16 11 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 13 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 14 C 0.15 3.50 5.29 -2.35 -0.01 3.48 16 15 C 0.12 2.31 2.67 -65.78 -0.18 2.13 16 16 H 0.09 1.69 7.44 -51.93 -0.39 1.31 16 17 N -0.70 -11.23 4.52 -51.73 -0.23 -11.46 16 18 C 0.49 8.23 7.90 -10.98 -0.09 8.15 16 19 O -0.52 -11.23 16.06 5.56 0.09 -11.15 16 20 C 0.09 1.13 6.48 -5.19 -0.03 1.10 16 21 N -0.47 -6.76 2.27 -115.71 -0.26 -7.02 16 22 C 0.06 0.74 11.27 -16.73 -0.19 0.56 16 23 C -0.21 -2.74 11.08 -37.67 -0.42 -3.16 16 24 C -0.11 -1.69 6.37 -105.14 -0.67 -2.36 16 25 C -0.08 -1.08 10.05 -39.64 -0.40 -1.48 16 26 C -0.15 -2.00 9.97 -39.95 -0.40 -2.40 16 27 C -0.10 -1.51 10.01 -39.54 -0.40 -1.90 16 28 C -0.12 -1.94 10.00 -39.43 -0.39 -2.33 16 29 C 0.11 1.84 6.80 -83.99 -0.57 1.27 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.59 6.34 -51.93 -0.33 0.26 16 33 H 0.06 1.09 7.45 -51.93 -0.39 0.70 16 34 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.02 0.45 7.84 -51.93 -0.41 0.04 16 37 H 0.02 0.39 7.82 -51.93 -0.41 -0.02 16 38 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 39 H 0.11 3.12 5.89 -51.93 -0.31 2.81 16 40 H 0.02 0.54 7.72 -51.93 -0.40 0.14 16 41 H 0.40 5.52 7.13 -40.82 -0.29 5.23 16 42 H 0.11 1.32 8.14 -51.93 -0.42 0.90 16 43 H 0.11 0.96 8.11 -51.93 -0.42 0.53 16 44 H 0.16 1.46 8.06 -52.49 -0.42 1.04 16 45 H 0.14 1.49 8.06 -52.49 -0.42 1.07 16 46 H 0.12 1.30 8.06 -52.48 -0.42 0.88 16 47 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 48 H 0.12 1.60 8.06 -52.48 -0.42 1.18 16 49 H 0.12 2.01 8.06 -52.49 -0.42 1.59 16 LS Contribution 395.62 15.07 5.96 5.96 Total: -1.00 -34.08 395.62 -10.54 -44.62 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: -7.53 Total: 8.59 kcal Atomic # 6 Polarization: -1.63 SS G_CDS: -3.52 Total: -5.14 kcal Atomic # 7 Polarization: -59.15 SS G_CDS: -0.51 Total: -59.67 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: 0.09 Total: -11.15 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.08 -10.54 -44.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977628453.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.306 kcal (2) G-P(sol) polarization free energy of solvation -34.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds